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Volumn 16, Issue , 2013, Pages 212-217

Characterization of human rotaviruses circulating in Iraq in 2008: Atypical G8 and high prevalence of P[6] strains

Author keywords

Diarrhea; G12; G8; Iraq; P 6 ; Rotavirus

Indexed keywords

ARTICLE; CONTROLLED STUDY; DIARRHEA; ENZYME IMMUNOASSAY; GEL ELECTROPHORESIS; GENOTYPE; IRAQ; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PREVALENCE; PRIORITY JOURNAL; RNA EXTRACTION; ROTAVIRUS; ROTAVIRUS GROUP A; VIRUS IDENTIFICATION; VIRUS PURIFICATION; VIRUS STRAIN;

EID: 84875505755     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2012.12.003     Document Type: Article
Times cited : (22)

References (44)
  • 1
    • 0041521153 scopus 로고    scopus 로고
    • Close relationship between G8-serotype bovine and human rotaviruses isolated in Nigeria
    • Adah M.I., Nagashima S., Wakuda M., Taniguchi K. Close relationship between G8-serotype bovine and human rotaviruses isolated in Nigeria. J. Clin. Microbiol. 2003, 41:3945-3950.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 3945-3950
    • Adah, M.I.1    Nagashima, S.2    Wakuda, M.3    Taniguchi, K.4
  • 3
    • 84859963822 scopus 로고    scopus 로고
    • Systematic review of regional and temporal trends in global rotavirus strain diversity in the pre rotavirus vaccine era: insights for understanding the impact of rotavirus vaccination programs
    • Bányai K., László B., Duque J., Steele A.D., Nelson E.A., Gentsch J.R., Parashar U.D. Systematic review of regional and temporal trends in global rotavirus strain diversity in the pre rotavirus vaccine era: insights for understanding the impact of rotavirus vaccination programs. Vaccine 2012, 27(1 Suppl):A122-130.
    • (2012) Vaccine , vol.27 , Issue.1 SUPPL
    • Bányai, K.1    László, B.2    Duque, J.3    Steele, A.D.4    Nelson, E.A.5    Gentsch, J.R.6    Parashar, U.D.7
  • 5
    • 34548407520 scopus 로고    scopus 로고
    • Rotaviruses
    • Kluwer/Lippincott, Williams and Wilkins, Philadelphia, PA, D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman, S.E. Straus (Eds.) Fields Virology
    • Estes M., Kapikian A. Rotaviruses. fifth edition 2007, 1917-1974. Kluwer/Lippincott, Williams and Wilkins, Philadelphia, PA. D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman, S.E. Straus (Eds.).
    • (2007) fifth edition , pp. 1917-1974
    • Estes, M.1    Kapikian, A.2
  • 7
    • 0026686160 scopus 로고
    • Identification of group-a rotavirus gene-4 types by polymerase chain-reaction
    • Gentsch J.R., Glass R.I., Woods P., et al. Identification of group-a rotavirus gene-4 types by polymerase chain-reaction. J. Clin. Microbiol. 1992, 30:1365-1373.
    • (1992) J. Clin. Microbiol. , vol.30 , pp. 1365-1373
    • Gentsch, J.R.1    Glass, R.I.2    Woods, P.3
  • 9
    • 78650357842 scopus 로고    scopus 로고
    • Full genomic analysis of a G8P[1] rotavirus strain isolated from an asymptomatic infant in Kenya provides evidence for an artiodactyl-to-human interspecies transmission event
    • Ghosh S., Gatheru Z., Nyangao J., Adachi N., Urushibara N., Kobayashi N. Full genomic analysis of a G8P[1] rotavirus strain isolated from an asymptomatic infant in Kenya provides evidence for an artiodactyl-to-human interspecies transmission event. J. Med. Virol. 2011, 83:367-376.
    • (2011) J. Med. Virol. , vol.83 , pp. 367-376
    • Ghosh, S.1    Gatheru, Z.2    Nyangao, J.3    Adachi, N.4    Urushibara, N.5    Kobayashi, N.6
  • 10
    • 77954397661 scopus 로고    scopus 로고
    • Detection of uncommon rotavirus A strains P[8]G8 and P[4]G8 in the city of Rio de Janeiro, 2002
    • Gómez M., Volotão E., de Mendonça M., Tort L., da Silva M., Leite J. Detection of uncommon rotavirus A strains P[8]G8 and P[4]G8 in the city of Rio de Janeiro, 2002. J. Med. Virol. 2010, 82:1272-1276.
    • (2010) J. Med. Virol. , vol.82 , pp. 1272-1276
    • Gómez, M.1    Volotão, E.2    de Mendonça, M.3    Tort, L.4    da Silva, M.5    Leite, J.6
  • 11
    • 0025166405 scopus 로고
    • Polymerase chain-reaction amplification and typing of rotavirus nucleic-acid from stool specimens
    • Gouvea V., Glass RI., Woods P., et al. Polymerase chain-reaction amplification and typing of rotavirus nucleic-acid from stool specimens. J. Clin. Microbiol. 1990, 28:276-282.
    • (1990) J. Clin. Microbiol. , vol.28 , pp. 276-282
    • Gouvea, V.1    Glass, R.I.2    Woods, P.3
  • 12
    • 0036058274 scopus 로고    scopus 로고
    • Characterization of nontypeable rotavirus strains from the United States: identification of a new rotavirus reassortant (P2A[6], G12) and rare P3[9] strains related to bovine rotaviruses
    • Griffin D., Nakagomi T., Hoshino Y., Nakagomi O., Kirkwood C., Parashar U., Glass R., Gentsch J. Characterization of nontypeable rotavirus strains from the United States: identification of a new rotavirus reassortant (P2A[6], G12) and rare P3[9] strains related to bovine rotaviruses. Virology 2002, 294:256-269.
    • (2002) Virology , vol.294 , pp. 256-269
    • Griffin, D.1    Nakagomi, T.2    Hoshino, Y.3    Nakagomi, O.4    Kirkwood, C.5    Parashar, U.6    Glass, R.7    Gentsch, J.8
  • 13
    • 0021280448 scopus 로고
    • Isolation of human rotaviruses with a distinct RNA electrophoretic pattern from Indonesia
    • Hasegawa A., Inouye S., Matsuno S., Yamaoka K., Eko R., Suharyono W. Isolation of human rotaviruses with a distinct RNA electrophoretic pattern from Indonesia. Microbiol. Immunol. 1984, 28:719-722.
    • (1984) Microbiol. Immunol. , vol.28 , pp. 719-722
    • Hasegawa, A.1    Inouye, S.2    Matsuno, S.3    Yamaoka, K.4    Eko, R.5    Suharyono, W.6
  • 14
    • 55549113560 scopus 로고    scopus 로고
    • Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions
    • Heiman E.M., McDonald S.M., Barro M., Taraporewala Z.F., Bar-Magen T., Patton J.T. Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions. J. Virol. 2008, 82:11106-11116.
    • (2008) J. Virol. , vol.82 , pp. 11106-11116
    • Heiman, E.M.1    McDonald, S.M.2    Barro, M.3    Taraporewala, Z.F.4    Bar-Magen, T.5    Patton, J.T.6
  • 15
    • 80052750696 scopus 로고    scopus 로고
    • Whole genome analyses of African G2, G8, G9, and G12 rotavirus strains using sequence-independent amplification and 454® pyrosequencing
    • Jere K.C., Mlera L., O'Neill H.G., Potgieter A.C., Page N.A., Seheri M.L., van Dijk A.A. Whole genome analyses of African G2, G8, G9, and G12 rotavirus strains using sequence-independent amplification and 454® pyrosequencing. J. Med. Virol. 2011, 83:2018-4246.
    • (2011) J. Med. Virol. , vol.83 , pp. 2018-4246
    • Jere, K.C.1    Mlera, L.2    O'Neill, H.G.3    Potgieter, A.C.4    Page, N.A.5    Seheri, M.L.6    van Dijk, A.A.7
  • 19
    • 0021839540 scopus 로고
    • A candidate for a new serotype of human rotavirus
    • Matsuno S., Hasegawa A., Mukoyama A., Inouye S. A candidate for a new serotype of human rotavirus. J. Virol. 1985, 54:623-624.
    • (1985) J. Virol. , vol.54 , pp. 623-624
    • Matsuno, S.1    Hasegawa, A.2    Mukoyama, A.3    Inouye, S.4
  • 22
    • 54449092749 scopus 로고    scopus 로고
    • Two out of the 11 genes of an unusual human G6P[6] rotavirus isolate are of bovine origin
    • Matthijnssens J., Rahman M., Van Ranst M. Two out of the 11 genes of an unusual human G6P[6] rotavirus isolate are of bovine origin. J. Gen. Virol. 2008, 89:2630-2645.
    • (2008) J. Gen. Virol. , vol.89 , pp. 2630-2645
    • Matthijnssens, J.1    Rahman, M.2    Van Ranst, M.3
  • 24
    • 77957234590 scopus 로고    scopus 로고
    • Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread
    • Matthijnssens J., Heylen E., Zeller M., Rahman M., Lemey P., Van Ranst M. Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread. Mol. Biol. Evol. 2010, 27:2431-2436.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2431-2436
    • Matthijnssens, J.1    Heylen, E.2    Zeller, M.3    Rahman, M.4    Lemey, P.5    Van Ranst, M.6
  • 29
    • 70449623205 scopus 로고    scopus 로고
    • Molecular characteristics of German G8P[4] rotavirus strain GER1H-09 suggest that a genotyping and subclassification update is required for G8
    • Pietsch C., Petersen L., Patzer L., Liebert U.G. Molecular characteristics of German G8P[4] rotavirus strain GER1H-09 suggest that a genotyping and subclassification update is required for G8. J. Clin. Microbiol. 2009, 47:3569-3576.
    • (2009) J. Clin. Microbiol. , vol.47 , pp. 3569-3576
    • Pietsch, C.1    Petersen, L.2    Patzer, L.3    Liebert, U.G.4
  • 32
    • 0025882519 scopus 로고    scopus 로고
    • Human rotavirus strain 69M has a unique VP4 as determined by amino-acid-sequence analysis
    • Qian Y., Green K. Human rotavirus strain 69M has a unique VP4 as determined by amino-acid-sequence analysis. Virology 2010, 182:407-412.
    • (2010) Virology , vol.182 , pp. 407-412
    • Qian, Y.1    Green, K.2
  • 33
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 34
    • 11244302672 scopus 로고    scopus 로고
    • Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine
    • Santos N., Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev. Med. Virol. 2005, 15:29-56.
    • (2005) Rev. Med. Virol. , vol.15 , pp. 29-56
    • Santos, N.1    Hoshino, Y.2
  • 36
    • 0032697056 scopus 로고    scopus 로고
    • Comparative studies of human rotavirus serotype G8 strains recovered in South Africa and the United Kingdom
    • Steele A., Parker S., Peenze I., Pager C., Taylor M., Cubitt W. Comparative studies of human rotavirus serotype G8 strains recovered in South Africa and the United Kingdom. J. Gen. Virol. 1999, 80:3029-3034.
    • (1999) J. Gen. Virol. , vol.80 , pp. 3029-3034
    • Steele, A.1    Parker, S.2    Peenze, I.3    Pager, C.4    Taylor, M.5    Cubitt, W.6
  • 37
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 38
    • 0025007083 scopus 로고
    • Nucleotide sequence of VP4 and VP7 genes of human rotaviruses with subgroup I specificity and long RNA pattern: implication of new G serotype specificity
    • Taniguchi K., Urasawa T., Kobayashi N., Gorziglia M., Urasawa S. Nucleotide sequence of VP4 and VP7 genes of human rotaviruses with subgroup I specificity and long RNA pattern: implication of new G serotype specificity. J. Virol. 1990, 64:5640-5644.
    • (1990) J. Virol. , vol.64 , pp. 5640-5644
    • Taniguchi, K.1    Urasawa, T.2    Kobayashi, N.3    Gorziglia, M.4    Urasawa, S.5
  • 39
    • 84856217709 scopus 로고    scopus 로고
    • The WHO-coordinated global rotavirus surveillance network. 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis
    • Tate J.E., Burton A.H., Boschi-Pinto C., Steele A.D., Duque J., Parashar U.D. The WHO-coordinated global rotavirus surveillance network. 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet Infect. Dis. 2012, 12:136-141.
    • (2012) Lancet Infect. Dis. , vol.12 , pp. 136-141
    • Tate, J.E.1    Burton, A.H.2    Boschi-Pinto, C.3    Steele, A.D.4    Duque, J.5    Parashar, U.D.6
  • 40
    • 0033827711 scopus 로고    scopus 로고
    • Distribution of rotavirus VP7 serotypes and VP4 genotypes circulating in Sousse, Tunisia, from 1995 to 1999: emergence of natural human reassortants
    • Trabelsi A., Peenze I., Pager C., et al. Distribution of rotavirus VP7 serotypes and VP4 genotypes circulating in Sousse, Tunisia, from 1995 to 1999: emergence of natural human reassortants. J. Clin. Microbiol. 2000, 38:3415-3419.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 3415-3419
    • Trabelsi, A.1    Peenze, I.2    Pager, C.3
  • 41
    • 84875504639 scopus 로고    scopus 로고
    • Identification of an avian group A rotavirus containing a novel VP4 gene of close relationship to those of mammalian rotaviruses
    • [Epub ahead of print].
    • Trojnar, E., Sachsenroder, J., Twardziok, S., Reetz, J., Otto, PH., Johne, R., 2012. Identification of an avian group A rotavirus containing a novel VP4 gene of close relationship to those of mammalian rotaviruses. J Gen Virol. [Epub ahead of print].
    • (2012) J Gen Virol.
    • Trojnar, E.1    Sachsenroder, J.2    Twardziok, S.3    Reetz, J.4    Otto, P.H.5    Johne, R.6
  • 44
    • 73349096317 scopus 로고    scopus 로고
    • Meeting of the strategic advisory group of experts on immunization, conclusions and recommendations
    • World Health Organization
    • World Health Organization Meeting of the strategic advisory group of experts on immunization, conclusions and recommendations. Wkly. Epidemiol. Rec. 2009, 84:517-532.
    • (2009) Wkly. Epidemiol. Rec. , vol.84 , pp. 517-532


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