메뉴 건너뛰기




Volumn 21, Issue , 2014, Pages 334-350

A rare G1P[6] super-short human rotavirus strain carrying an H2 genotype on the genetic background of a porcine rotavirus

Author keywords

Interspecies transmission; Molecular epidemiology; Phylogeny; Rotavirus; Super short electropherotype

Indexed keywords

ARTICLE; GENE SEQUENCE; GENOTYPE; HUMAN ROTAVIRUS; NONHUMAN; NSP2 GENE; NSP5 GENE; NUCLEOTIDE SEQUENCE; PHYLOGENY; PORCINE ROTAVIRUS; PRIORITY JOURNAL; ROTAVIRUS; STRAIN DIFFERENCE; VIRUS GENE; VIRUS GENOME; VIRUS TRANSMISSION; ANIMAL; CELL LINE; CHILD; CLASSIFICATION; GASTROENTERITIS; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; HUMAN; MOLECULAR EVOLUTION; MOLECULAR GENETICS; RHESUS MONKEY; ROTAVIRUS INFECTION; SWINE; SWINE DISEASE; TRANSMISSION; VIROLOGY;

EID: 84890837650     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2013.11.027     Document Type: Article
Times cited : (16)

References (47)
  • 1
    • 34447648777 scopus 로고    scopus 로고
    • Molecular identification of a novel G1 VP7 gene carried by a human rotavirus with a super-short RNA pattern
    • Ahmed K., Nakagomi T., Nakagomi O. Molecular identification of a novel G1 VP7 gene carried by a human rotavirus with a super-short RNA pattern. Virus Genes 2007, 35:141-145.
    • (2007) Virus Genes , vol.35 , pp. 141-145
    • Ahmed, K.1    Nakagomi, T.2    Nakagomi, O.3
  • 2
    • 0022384329 scopus 로고
    • Detection of human rotaviruses with a 'super-short' RNA pattern
    • Albert M.J. Detection of human rotaviruses with a 'super-short' RNA pattern. Acta Paediatr. Scand. 1985, 74:975-976.
    • (1985) Acta Paediatr. Scand. , vol.74 , pp. 975-976
    • Albert, M.J.1
  • 4
    • 84880511824 scopus 로고    scopus 로고
    • Complete genome analyses of G4P[6] rotavirus detected in Argentinean children with diarrhoea provides evidence of interspecies transmission from swine
    • Degiuseppe J.I., Beltramino J.C., Millan A., Stupka J.A., Parra G.I. Complete genome analyses of G4P[6] rotavirus detected in Argentinean children with diarrhoea provides evidence of interspecies transmission from swine. Clin. Microbiol. Infect. 2013, 19:E367-371.
    • (2013) Clin. Microbiol. Infect. , vol.19
    • Degiuseppe, J.I.1    Beltramino, J.C.2    Millan, A.3    Stupka, J.A.4    Parra, G.I.5
  • 5
    • 0019523207 scopus 로고
    • Gene-coding assignments of rotavirus double-stranded RNA segments 10 and 11
    • Dyall-Smith M.L., Holmes I.H. Gene-coding assignments of rotavirus double-stranded RNA segments 10 and 11. J. Virol. 1981, 38:1099-1103.
    • (1981) J. Virol. , vol.38 , pp. 1099-1103
    • Dyall-Smith, M.L.1    Holmes, I.H.2
  • 6
    • 0035814492 scopus 로고    scopus 로고
    • Rotavirus cross-species pathogenicity: molecular characterization of a bovine rotavirus pathogenic for pigs
    • El-Attar L., Dhaliwal W., Howard C.R., Bridger J.C. Rotavirus cross-species pathogenicity: molecular characterization of a bovine rotavirus pathogenic for pigs. Virology 2001, 291:172-182.
    • (2001) Virology , vol.291 , pp. 172-182
    • El-Attar, L.1    Dhaliwal, W.2    Howard, C.R.3    Bridger, J.C.4
  • 7
    • 84862512488 scopus 로고    scopus 로고
    • Evidence for the porcine origin of equine rotavirus strain H-1
    • Ghosh S., Shintani T., Kobayashi N. Evidence for the porcine origin of equine rotavirus strain H-1. Vet. Microbiol. 2012, 158:410-414.
    • (2012) Vet. Microbiol. , vol.158 , pp. 410-414
    • Ghosh, S.1    Shintani, T.2    Kobayashi, N.3
  • 8
    • 84857658234 scopus 로고    scopus 로고
    • Whole genomic analysis reveals the porcine origin of human G9P[19] rotavirus strains Mc323 and Mc345
    • Ghosh S., Urushibara N., Taniguchi K., Kobayashi N. Whole genomic analysis reveals the porcine origin of human G9P[19] rotavirus strains Mc323 and Mc345. Infect. Genet. Evol. 2012, 12:471-477.
    • (2012) Infect. Genet. Evol. , vol.12 , pp. 471-477
    • Ghosh, S.1    Urushibara, N.2    Taniguchi, K.3    Kobayashi, N.4
  • 10
    • 0027950177 scopus 로고
    • A rearranged genomic segment 11 is common to different human rotaviruses
    • Giambiagi S., González Rodríguez I., Gómez J., Burrone O. A rearranged genomic segment 11 is common to different human rotaviruses. Arch. Virol. 1994, 136:415-421.
    • (1994) Arch. Virol. , vol.136 , pp. 415-421
    • Giambiagi, S.1    González Rodríguez, I.2    Gómez, J.3    Burrone, O.4
  • 12
    • 65449119503 scopus 로고    scopus 로고
    • Rotaviruses: from pathogenesis to vaccination
    • Greenberg H.B., Estes M.K. Rotaviruses: from pathogenesis to vaccination. Gastroenterology 2009, 136:1939-1951.
    • (2009) Gastroenterology , vol.136 , pp. 1939-1951
    • Greenberg, H.B.1    Estes, M.K.2
  • 13
    • 0021280448 scopus 로고
    • Isolation of human rotaviruses with a distinct RNA electrophoretic pattern from Indonesia
    • Hasegawa A., Inouye S., Matsuno S., Yamaoka K., Eko R., Suharyono W. Isolation of human rotaviruses with a distinct RNA electrophoretic pattern from Indonesia. Microbiol. Immunol. 1984, 28:719-722.
    • (1984) Microbiol. Immunol. , vol.28 , pp. 719-722
    • Hasegawa, A.1    Inouye, S.2    Matsuno, S.3    Yamaoka, K.4    Eko, R.5    Suharyono, W.6
  • 14
    • 55549113560 scopus 로고    scopus 로고
    • Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions
    • Heiman E.M., McDonald S.M., Barro M., Taraporewala Z.F., Bar-Magen T., Patton J.T. Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions. J. Virol. 2008, 82:11106-11116.
    • (2008) J. Virol. , vol.82 , pp. 11106-11116
    • Heiman, E.M.1    McDonald, S.M.2    Barro, M.3    Taraporewala, Z.F.4    Bar-Magen, T.5    Patton, J.T.6
  • 15
    • 0024525111 scopus 로고
    • The VP7 gene of a new G serotype of human rotavirus (B37) is similar to G3 proteins in the antigenic c region
    • Hum C.P., Dyall-Smith M.L., Holmes I.H. The VP7 gene of a new G serotype of human rotavirus (B37) is similar to G3 proteins in the antigenic c region. Virology 1989, 170:55-61.
    • (1989) Virology , vol.170 , pp. 55-61
    • Hum, C.P.1    Dyall-Smith, M.L.2    Holmes, I.H.3
  • 16
    • 0026808707 scopus 로고
    • A VP4 sequence highly conserved in human rotavirus strain AU-1 and feline rotavirus strain FRV-1
    • Isegawa Y., Nakagomi O., Nakagomi T., Ueda S. A VP4 sequence highly conserved in human rotavirus strain AU-1 and feline rotavirus strain FRV-1. J. Gen. Virol. 1992, 73:1939-1946.
    • (1992) J. Gen. Virol. , vol.73 , pp. 1939-1946
    • Isegawa, Y.1    Nakagomi, O.2    Nakagomi, T.3    Ueda, S.4
  • 17
    • 0030588295 scopus 로고    scopus 로고
    • Sequence analysis of normal and rearranged NSP5 genes from human rotavirus strains isolated in nature: implications for the occurrence of the rearrangement at the step of plus strand synthesis
    • Kojima K., Taniguchi K., Urasawa T., Urasawa S. Sequence analysis of normal and rearranged NSP5 genes from human rotavirus strains isolated in nature: implications for the occurrence of the rearrangement at the step of plus strand synthesis. Virology 1996, 224:446-452.
    • (1996) Virology , vol.224 , pp. 446-452
    • Kojima, K.1    Taniguchi, K.2    Urasawa, T.3    Urasawa, S.4
  • 18
    • 84879162658 scopus 로고    scopus 로고
    • Whole genomic analysis of a porcine-like human G5P[6] rotavirus strain isolated from a child with diarrhoea and encephalopathy in Japan
    • Komoto S., Maeno Y., Tomita M., Matsuoka T., Ohfu M., Yodoshi T., Akeda H., Taniguchi K. Whole genomic analysis of a porcine-like human G5P[6] rotavirus strain isolated from a child with diarrhoea and encephalopathy in Japan. J. Gen. Virol. 2013, 94:1568-1575.
    • (2013) J. Gen. Virol. , vol.94 , pp. 1568-1575
    • Komoto, S.1    Maeno, Y.2    Tomita, M.3    Matsuoka, T.4    Ohfu, M.5    Yodoshi, T.6    Akeda, H.7    Taniguchi, K.8
  • 19
    • 0019994617 scopus 로고
    • Two distinct electrophoretic migration patterns of RNA segments of human rotaviruses prevalent in Japan in relation to their serotypes
    • Kutsuzawa T., Konno T., Suzuki H., Ebina T., Ishida N. Two distinct electrophoretic migration patterns of RNA segments of human rotaviruses prevalent in Japan in relation to their serotypes. Microbiol. Immunol. 1982, 26:271-273.
    • (1982) Microbiol. Immunol. , vol.26 , pp. 271-273
    • Kutsuzawa, T.1    Konno, T.2    Suzuki, H.3    Ebina, T.4    Ishida, N.5
  • 20
    • 72449136215 scopus 로고    scopus 로고
    • RotaC: a web-based tool for the complete genome classification of group A rotaviruses
    • Maes P., Matthijnssens J., Rahman M., Van Ranst M. RotaC: a web-based tool for the complete genome classification of group A rotaviruses. BMC Microbiol. 2009, 9:238.
    • (2009) BMC Microbiol. , vol.9 , pp. 238
    • Maes, P.1    Matthijnssens, J.2    Rahman, M.3    Van Ranst, M.4
  • 21
    • 0025124525 scopus 로고
    • Sequence analysis of gene 11 equivalents from "short" and "super short" strains of rotavirus
    • Matsui S.M., Mackow E.R., Matsuno S., Paul P.S., Greenberg H.B. Sequence analysis of gene 11 equivalents from "short" and "super short" strains of rotavirus. J. Virol. 1990, 64:120-124.
    • (1990) J. Virol. , vol.64 , pp. 120-124
    • Matsui, S.M.1    Mackow, E.R.2    Matsuno, S.3    Paul, P.S.4    Greenberg, H.B.5
  • 22
    • 0021839540 scopus 로고
    • A candidate for a new serotype of human rotavirus
    • Matsuno S., Hasegawa A., Mukoyama A., Inouye S. A candidate for a new serotype of human rotavirus. J. Virol. 1985, 54:623-624.
    • (1985) J. Virol. , vol.54 , pp. 623-624
    • Matsuno, S.1    Hasegawa, A.2    Mukoyama, A.3    Inouye, S.4
  • 23
  • 30
    • 79960890403 scopus 로고    scopus 로고
    • Full genomic analyses of human rotavirus G4P[4], G4P[6], G9P[19] and G10P[6] strains from North-Eastern India: evidence for interspecies transmission and complex reassortment events
    • Mukherjee A., Ghosh S., Bagchi P., Dutta D., Chattopadhyay S., Kobayashi N., Chawla-Sarkar M. Full genomic analyses of human rotavirus G4P[4], G4P[6], G9P[19] and G10P[6] strains from North-Eastern India: evidence for interspecies transmission and complex reassortment events. Clin. Microbiol. Infect. 2011, 17:1343-1346.
    • (2011) Clin. Microbiol. Infect. , vol.17 , pp. 1343-1346
    • Mukherjee, A.1    Ghosh, S.2    Bagchi, P.3    Dutta, D.4    Chattopadhyay, S.5    Kobayashi, N.6    Chawla-Sarkar, M.7
  • 32
    • 0029417322 scopus 로고
    • Distinctness of NSP1 gene of human rotavirus AU-1 from NSP1 gene of other human genogroups
    • Nakagomi O., Kaga E. Distinctness of NSP1 gene of human rotavirus AU-1 from NSP1 gene of other human genogroups. Res. Virol. 1995, 146:423-428.
    • (1995) Res. Virol. , vol.146 , pp. 423-428
    • Nakagomi, O.1    Kaga, E.2
  • 33
    • 0033054673 scopus 로고    scopus 로고
    • Isolation of a human rotavirus strain with a super-short RNA pattern and a new P2 subtype
    • Nakagomi T., Horie Y., Koshimura Y., Greenberg H.B., Nakagomi O. Isolation of a human rotavirus strain with a super-short RNA pattern and a new P2 subtype. J. Clin. Microbiol. 1999, 37:1213-1216.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 1213-1216
    • Nakagomi, T.1    Horie, Y.2    Koshimura, Y.3    Greenberg, H.B.4    Nakagomi, O.5
  • 34
    • 0024395208 scopus 로고
    • Sequences of VP9 genes from short and supershort rotavirus strains
    • Nuttall S.D., Hum C.P., Holmes I.H., Dyall-Smith M.L. Sequences of VP9 genes from short and supershort rotavirus strains. Virology 1989, 171:453-457.
    • (1989) Virology , vol.171 , pp. 453-457
    • Nuttall, S.D.1    Hum, C.P.2    Holmes, I.H.3    Dyall-Smith, M.L.4
  • 37
    • 0025882519 scopus 로고
    • Human rotavirus strain 69M has a unique VP4 as determined by amino acid sequence analysis
    • Qian Y., Green K.Y. Human rotavirus strain 69M has a unique VP4 as determined by amino acid sequence analysis. Virology 1991, 182:407-412.
    • (1991) Virology , vol.182 , pp. 407-412
    • Qian, Y.1    Green, K.Y.2
  • 39
    • 41149170070 scopus 로고    scopus 로고
    • Rearrangements of rotavirus genomic segment 11 are generated during acute infection of immunocompetent children and do not occur at random
    • Schnepf N., Deback C., Dehee A., Gault E., Parez N., Garbarg-Chenon A. Rearrangements of rotavirus genomic segment 11 are generated during acute infection of immunocompetent children and do not occur at random. J. Virol. 2008, 82:3689-3696.
    • (2008) J. Virol. , vol.82 , pp. 3689-3696
    • Schnepf, N.1    Deback, C.2    Dehee, A.3    Gault, E.4    Parez, N.5    Garbarg-Chenon, A.6
  • 40
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 41
    • 84856217709 scopus 로고    scopus 로고
    • 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis
    • Tate J.E., Burton A.H., Boschi-Pinto C., Steele A.D., Duque J., Parashar U.D. 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet Infect. Dis. 2012, 12:136-141.
    • (2012) Lancet Infect. Dis. , vol.12 , pp. 136-141
    • Tate, J.E.1    Burton, A.H.2    Boschi-Pinto, C.3    Steele, A.D.4    Duque, J.5    Parashar, U.D.6
  • 42
    • 14944345143 scopus 로고    scopus 로고
    • Predominance of porcine rotavirus G9 in Japanese piglets with diarrhea: close relationship of their VP7 genes with those of recent human G9 strains
    • Teodoroff T.A., Tsunemitsu H., Okamoto K., Katsuda K., Kohmoto M., Kawashima K., Nakagomi T., Nakagomi O. Predominance of porcine rotavirus G9 in Japanese piglets with diarrhea: close relationship of their VP7 genes with those of recent human G9 strains. J. Clin. Microbiol. 2005, 43:1377-1384.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 1377-1384
    • Teodoroff, T.A.1    Tsunemitsu, H.2    Okamoto, K.3    Katsuda, K.4    Kohmoto, M.5    Kawashima, K.6    Nakagomi, T.7    Nakagomi, O.8
  • 44
    • 0842330909 scopus 로고    scopus 로고
    • Molecular characterization of a human rotavirus reveals porcine characteristics in most of the genes including VP6 and NSP4
    • Varghese V., Das S., Singh N.B., Kojima K., Bhattacharya S.K., Krishnan T., Kobayashi N., Naik T.N. Molecular characterization of a human rotavirus reveals porcine characteristics in most of the genes including VP6 and NSP4. Arch. Virol. 2004, 149:155-172.
    • (2004) Arch. Virol. , vol.149 , pp. 155-172
    • Varghese, V.1    Das, S.2    Singh, N.B.3    Kojima, K.4    Bhattacharya, S.K.5    Krishnan, T.6    Kobayashi, N.7    Naik, T.N.8
  • 46
    • 77953527094 scopus 로고    scopus 로고
    • Full genomic analysis of a porcine-bovine reassortant G4P[6] rotavirus strain R479 isolated from an infant in China
    • Wang Y.H., Kobayashi N., Nagashima S., Zhou X., Ghosh S., Peng J.S., Hu Q., Zhou D.J., Yang Z.Q. Full genomic analysis of a porcine-bovine reassortant G4P[6] rotavirus strain R479 isolated from an infant in China. J. Med. Virol. 2010, 82:1094-1102.
    • (2010) J. Med. Virol. , vol.82 , pp. 1094-1102
    • Wang, Y.H.1    Kobayashi, N.2    Nagashima, S.3    Zhou, X.4    Ghosh, S.5    Peng, J.S.6    Hu, Q.7    Zhou, D.J.8    Yang, Z.Q.9
  • 47
    • 84865389252 scopus 로고    scopus 로고
    • Full genome characterization of a porcine-like human G9P[6] rotavirus strain isolated from an infant in Belgium
    • Zeller M., Heylen E., De Coster S., Van Ranst M., Matthijnssens J. Full genome characterization of a porcine-like human G9P[6] rotavirus strain isolated from an infant in Belgium. Infect. Genet. Evol. 2012, 12:1492-1500.
    • (2012) Infect. Genet. Evol. , vol.12 , pp. 1492-1500
    • Zeller, M.1    Heylen, E.2    De Coster, S.3    Van Ranst, M.4    Matthijnssens, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.