메뉴 건너뛰기




Volumn 4, Issue , 2014, Pages

Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

EID: 84903300632     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep05454     Document Type: Article
Times cited : (78)

References (65)
  • 2
    • 77955619699 scopus 로고    scopus 로고
    • An outlook on microalgal biofuels
    • Wijffels, R. H. & Barbosa, M. J. An outlook on microalgal biofuels. Science 329, 796-799 (2010).
    • (2010) Science , vol.329 , pp. 796-799
    • Wijffels, R.H.1    Barbosa, M.J.2
  • 3
    • 84865142852 scopus 로고    scopus 로고
    • Exploiting diversity and synthetic biology for the production of algal biofuels
    • Georgianna, D. R. & Mayfield, S. P. Exploiting diversity and synthetic biology for the production of algal biofuels. Nature 488, 329-335 (2012).
    • (2012) Nature , vol.488 , pp. 329-335
    • Georgianna, D.R.1    Mayfield, S.P.2
  • 4
    • 77953023710 scopus 로고    scopus 로고
    • Chlamydomonas starchless mutant defective in ADP-glucose pyrophosphorylase hyper-accumulates triacylglycerol
    • Li, Y. et al. Chlamydomonas starchless mutant defective in ADP-glucose pyrophosphorylase hyper-accumulates triacylglycerol. Metab. Eng. 12, 387-391 (2010).
    • (2010) Metab. Eng. , vol.12 , pp. 387-391
    • Li, Y.1
  • 5
    • 77956825813 scopus 로고    scopus 로고
    • Inhibition of starch synthesis results in overproduction of lipids in Chlamydomonas reinhardtii
    • Li, Y., Han, D., Hu, G., Sommerfeld, M. & Hu, Q. Inhibition of starch synthesis results in overproduction of lipids in Chlamydomonas reinhardtii. Biotechnol Bioeng. 107, 258-268 (2010).
    • (2010) Biotechnol Bioeng , vol.107 , pp. 258-268
    • Li, Y.1    Han, D.2    Hu, G.3    Sommerfeld, M.4    Hu, Q.5
  • 6
    • 0034625265 scopus 로고    scopus 로고
    • Endless forms: The evolution of gene regulation and morphological diversity
    • Carroll, S. B. Endless forms: the evolution of gene regulation and morphological diversity. Cell. 101, 577-80 (2000).
    • (2000) Cell , vol.101 , pp. 577-580
    • Carroll, S.B.1
  • 8
    • 0037440734 scopus 로고    scopus 로고
    • Evolution of transcription factors and the gene regulatory network in Escherichia coli
    • DOI 10.1093/nar/gkg210
    • Babu, M. M. & Teichmann, S. A. Evolution of transcription factors and the gene regulatory network in Escherichia coli. Nucleic Acids Res. 31, 1234-1244 (2003). (Pubitemid 36284965)
    • (2003) Nucleic Acids Research , vol.31 , Issue.4 , pp. 1234-1244
    • Babu, M.M.1    Teichmann, S.A.2
  • 9
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • DOI 10.1038/nature01644
    • Kellis, M., Patterson, N., Endrizzi, M., Birren, B. & Lander, E. S. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423, 241-254 (2003). (Pubitemid 40852689)
    • (2003) Nature , vol.423 , Issue.6937 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 11
    • 0018199224 scopus 로고
    • DNAase footprinting: A simple method for the detection of protein-DNA binding specificity
    • Galas, D. J. & Schmitz, A. DNAase footprinting a simple method for the detection of protein-DNA binding specificity. Nucleic Acids Res. 5, 3157-3170 (1978). (Pubitemid 9016990)
    • (1978) Nucleic Acids Research , vol.5 , Issue.9 , pp. 3157-3170
    • Galas, D.J.1    Schmitz, A.2
  • 12
    • 0019877067 scopus 로고
    • A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: Application to components of the Escherichia coli lactose operon regulatory system
    • Garner, M. M. & Revzin, A. A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system. Nucleic Acids Res. 9, 3047-3060 (1981).
    • (1981) Nucleic Acids Res , vol.9 , pp. 3047-3060
    • Garner, M.M.1    Revzin, A.2
  • 13
    • 52649132425 scopus 로고    scopus 로고
    • Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data
    • Jothi, R., Cuddapah, S., Barski, A., Cui, K. & Zhao, K. Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. Nucleic Acids Res. 36, 5221-5231 (2008).
    • (2008) Nucleic Acids Res , vol.36 , pp. 5221-5231
    • Jothi, R.1    Cuddapah, S.2    Barski, A.3    Cui, K.4    Zhao, K.5
  • 14
    • 78651337578 scopus 로고    scopus 로고
    • PlantTFDB 2.0: Update and improvement of the comprehensive plant transcription factor database
    • Zhang, H. et al. PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Res. 39, D1114-D1117 (2011).
    • (2011) Nucleic Acids Res , vol.39
    • Zhang, H.1
  • 15
    • 75549087883 scopus 로고    scopus 로고
    • PlnTFDB: Updated content and new features of the plant transcription factor database
    • Pérez-Rodŕguez, P. et al. PlnTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Res. 38, D822-D827 (2010).
    • (2010) Nucleic Acids Res , vol.38
    • Pérez-Rodŕguez, P.1
  • 16
    • 84870681271 scopus 로고    scopus 로고
    • Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779
    • Vieler, A. et al. Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. PLoS Genet 8, e1003064 (2012).
    • (2012) PLoS Genet , vol.8
    • Vieler, A.1
  • 17
    • 84867119166 scopus 로고    scopus 로고
    • Systematic prediction of cis-regulatory elements in the Chlamydomonas reinhardtii genome using comparative genomics
    • Ding, J., Li, X. & Hu, H. Systematic prediction of cis-regulatory elements in the Chlamydomonas reinhardtii genome using comparative genomics. Plant Physiol. 160, 613-623 (2012).
    • (2012) Plant Physiol , vol.160 , pp. 613-623
    • Ding, J.1    Li, X.2    Hu, H.3
  • 18
    • 84893754953 scopus 로고    scopus 로고
    • Nannochloropsis genomes reveal evolution of microalgal oleaginous traits
    • Wang, D. et al. Nannochloropsis genomes reveal evolution of microalgal oleaginous traits. PLoS Genet 10, e1004094 (2014).
    • (2014) PLoS Genet , vol.10
    • Wang, D.1
  • 19
    • 84857701617 scopus 로고    scopus 로고
    • Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropsis gaditana
    • Radakovits, R. et al. Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropsis gaditana. Nat Commun. 3, 686 (2012).
    • (2012) Nat Commun , vol.3 , pp. 686
    • Radakovits, R.1
  • 20
    • 84881082114 scopus 로고    scopus 로고
    • Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae
    • Wei, L. et al. Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae. BMC Genomics 14, 534 (2013).
    • (2013) BMC Genomics , vol.14 , pp. 534
    • Wei, L.1
  • 21
    • 0025855890 scopus 로고
    • Ecophysiological considerations in the optimization of eicosapentaenoic acid production by Nannochloropsis sp. (Eustigmatophyceae)
    • Sukenik, A. Ecophysiological considerations in the optimization of eicosapentaenoic acid production by Nannochloropsis sp. (Eustigmatophyceae) Bioresour Technol. 35, 263-269 (1991).
    • (1991) Bioresour Technol , vol.35 , pp. 263-269
    • Sukenik, A.1
  • 22
    • 84874961299 scopus 로고    scopus 로고
    • Establishing oleaginous microalgae research models for consolidated bioprocessing of solar energy
    • Wang, D. M., Lu, Y. D., Huang, H. & Xu, J. Establishing oleaginous microalgae research models for consolidated bioprocessing of solar energy. Adv Biochem Eng Biotechnol. 128, 69-84 (2012).
    • (2012) Adv Biochem Eng Biotechnol , vol.128 , pp. 69-84
    • Wang, D.M.1    Lu, Y.D.2    Huang, H.3    Xu, J.4
  • 23
    • 84903281698 scopus 로고    scopus 로고
    • Choreography of transcriptomes and lipidomes of Nannochloropsis reveals the mechanisms of oil synthesis in microalgae
    • Li, J. et al. Choreography of transcriptomes and lipidomes of Nannochloropsis reveals the mechanisms of oil synthesis in microalgae. Plant Cell tpc. 113.121418 (2014).
    • (2014) Plant Cell Tpc , vol.113 , pp. 121418
    • Li, J.1
  • 24
    • 33644876958 scopus 로고    scopus 로고
    • TRANSFACH and its module TRANSCompelH: Transcriptional gene regulation in eukaryotes
    • Matys, V. et al. TRANSFACH and its module TRANSCompelH: transcriptional gene regulation in eukaryotes. Nucleic Acids Res. 34, D108-D110 (2006).
    • (2006) Nucleic Acids Res , vol.34
    • Matys, V.1
  • 25
    • 0025995844 scopus 로고
    • A structural taxonomy of DNA-binding domains
    • Harrison, S. C. A structural taxonomy of DNA-binding domains. Nature 353, 715-719 (1991).
    • (1991) Nature , vol.353 , pp. 715-719
    • Harrison, S.C.1
  • 26
    • 77957341467 scopus 로고    scopus 로고
    • MYB transcription factors in Arabidopsis
    • Dubos, C. et al. MYB transcription factors in Arabidopsis. Trends Plant Sci. 15, 573-581 (2010).
    • (2010) Trends Plant Sci , vol.15 , pp. 573-581
    • Dubos, C.1
  • 27
    • 0031964050 scopus 로고    scopus 로고
    • Molecular evolution of the Myb family of transcription factors: Evidence for polyphyletic origin
    • DOI 10.1007/PL00006285
    • Rosinski, J. A. & Atchley, W. R. Molecular evolution of the Myb family of transcription factors: evidence for polyphyletic origin. J Mol Evol. 46, 74-83 (1998). (Pubitemid 28047241)
    • (1998) Journal of Molecular Evolution , vol.46 , Issue.1 , pp. 74-83
    • Rosinski, J.A.1    Atchley, W.R.2
  • 28
    • 0347318054 scopus 로고    scopus 로고
    • Ordered origin of the typical two- and three-repeat Myb genes
    • DOI 10.1016/j.gene.2003.09.049
    • Jiang, C., Gu, J., Chopra, S., Gu, X. & Peterson, T. Ordered origin of the typical two-and three-repeat Myb genes. Gene 326, 13-22 (2004). (Pubitemid 38068482)
    • (2004) Gene , vol.326 , Issue.1-2 , pp. 13-22
    • Jiang, C.1    Gu, J.2    Chopra, S.3    Gu, X.4    Peterson, T.5
  • 29
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • DOI 10.1093/nar/gkh340
    • Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004). (Pubitemid 38832724)
    • (2004) Nucleic Acids Research , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 30
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 4, 406-425 (1987).
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 31
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K. et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28, 2731-2739 (2011).
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 32
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse, E. et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35, 7188-7196 (2007).
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1
  • 33
    • 35848936305 scopus 로고    scopus 로고
    • The soybean Dof-type transcription factor genes, GmDof4 and GmDof11, enhance lipid content in the seeds of transgenic Arabidopsis plants
    • Wang, H. W. et al. The soybean Dof-type transcription factor genes, GmDof4 and GmDof11, enhance lipid content in the seeds of transgenic Arabidopsis plants. Plant J. 52, 716-729 (2007).
    • (2007) Plant J , vol.52 , pp. 716-729
    • Wang, H.W.1
  • 34
    • 0032159998 scopus 로고    scopus 로고
    • Wrinkled 1: A novel, low-seed-oil mutant of arabidopsis with a deficiency in the seed-specific regulation of carbohydrate metabolism
    • Focks, N. & Benning, C. Wrinkled1: a novel, low-seed-oil mutant of Arabidopsis with a deficiency in the seed-specific regulation of carbohydrate metabolism. Plant Physiol. 118, 91-101 (1998). (Pubitemid 128652972)
    • (1998) Plant Physiology , vol.118 , Issue.1 , pp. 91-101
    • Focks, N.1    Benning, C.2
  • 35
    • 71649083748 scopus 로고    scopus 로고
    • Role of WRINKLED1 in the transcriptional regulation of glycolytic and fatty acid biosynthetic genes in Arabidopsis
    • Baud, S., Wuillème, S., To, A., Rochat, C. & Lepiniec, L. Role of WRINKLED1 in the transcriptional regulation of glycolytic and fatty acid biosynthetic genes in Arabidopsis. Plant J. 60, 933-947 (2009).
    • (2009) Plant J , vol.60 , pp. 933-947
    • Baud, S.1    Wuillème, S.2    To, A.3    Rochat, C.4    Lepiniec, L.5
  • 36
    • 8444234764 scopus 로고    scopus 로고
    • WRINKLED1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis
    • DOI 10.1111/j.1365-313X.2004.02235.x
    • Cernac, A. & Benning, C. WRINKLED1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis. Plant J. 40, 575-585 (2004). (Pubitemid 39484176)
    • (2004) Plant Journal , vol.40 , Issue.4 , pp. 575-585
    • Cernac, A.1    Benning, C.2
  • 37
    • 67849122320 scopus 로고    scopus 로고
    • MEME SUITE: Tools for motif discovery and searching
    • Bailey, T. L. et al. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37, W202-W208 (2009).
    • (2009) Nucleic Acids Res , vol.37
    • Bailey, T.L.1
  • 38
    • 0042905768 scopus 로고    scopus 로고
    • YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation
    • DOI 10.1093/nar/gkg618
    • Sinha, S. & Tompa, M. YMF: a program for discovery of novel transcription factor binding sites by statistical overrepresentation. Nucleic Acids Res. 31, 3586-3588 (2003). (Pubitemid 37442203)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3586-3588
    • Sinha, S.1    Tompa, M.2
  • 39
    • 33747844623 scopus 로고    scopus 로고
    • FootPrinter3: Phylogenetic footprinting in partially alignable sequences
    • DOI 10.1093/nar/gkl123
    • Fang, F. & Blanchette, M. FootPrinter3: phylogenetic footprinting in partially alignable sequences. Nucleic Acids Res. 34, W617-W620 (2006). (Pubitemid 44529844)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Fang, F.1    Blanchette, M.2
  • 40
    • 0041589546 scopus 로고    scopus 로고
    • FootPrinter: A program designed for phylogenetic footprinting
    • DOI 10.1093/nar/gkg606
    • Blanchette, M. & Tompa, M. FootPrinter: a program designed for phylogenetic footprinting. Nucleic Acids Res. 31, 3840-3842 (2003). (Pubitemid 37442261)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3840-3842
    • Blanchette, M.1    Tompa, M.2
  • 41
    • 77957802676 scopus 로고    scopus 로고
    • Systematic identification of conserved motif modules in the human genome
    • Cai, X. et al. Systematic identification of conserved motif modules in the human genome. BMC Genomics 11, 567 (2010).
    • (2010) BMC Genomics , vol.11 , pp. 567
    • Cai, X.1
  • 42
    • 0041903634 scopus 로고    scopus 로고
    • Identification of conserved regulatory elements by comparative genome analysis
    • Lenhard, B. et al. Identification of conserved regulatory elements by comparative genome analysis. J Biol. 2, 13 (2003).
    • (2003) J Biol , vol.2 , pp. 13
    • Lenhard, B.1
  • 43
    • 15244358503 scopus 로고    scopus 로고
    • Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
    • DOI 10.1038/nature03441
    • Xie, X. et al. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434, 338-345 (2005). (Pubitemid 40469170)
    • (2005) Nature , vol.434 , Issue.7031 , pp. 338-345
    • Xie, X.1    Lu, J.2    Kulbokas, E.J.3    Golub, T.R.4    Mootha, V.5    Lindblad-Toh, K.6    Lander, E.S.7    Kellis, M.8
  • 44
    • 38549144819 scopus 로고    scopus 로고
    • A survey of DNA motif finding algorithms
    • Das, M. K. & Dai, H.-K. A survey of DNA motif finding algorithms. BMC Bioinformatics 8, S21 (2007).
    • (2007) BMC Bioinformatics , vol.8
    • Das, M.K.1    Dai, H.-K.2
  • 46
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • Li, W.-H., Wu, C.-I. & Luo, C.-C. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol. 2, 150-174 (1985).
    • (1985) Mol Biol Evol. , vol.2 , pp. 150-174
    • Li, W.-H.1    Wu, C.-I.2    Luo, C.-C.3
  • 47
    • 0000825481 scopus 로고
    • Rastatistical method for evaluating systematic relationships
    • Sokal, R. Rastatistical method for evaluating systematic relationships. Univ Kans Sci Bull 38, 1409-1438 (1958).
    • (1958) Univ Kans Sci Bull , vol.38 , pp. 1409-1438
    • Sokal, R.1
  • 48
    • 0031811991 scopus 로고    scopus 로고
    • PLACE: A database of plant cis-acting regulatory DNA elements
    • DOI 10.1093/nar/26.1.358
    • Higo, K., Ugawa, Y., Iwamoto, M. & Higo, H. PLACE: a database of plant cisacting regulatory DNA elements. Nucleic Acids Res. 26, 358-359 (1998). (Pubitemid 28291557)
    • (1998) Nucleic Acids Research , vol.26 , Issue.1 , pp. 358-359
    • Higo, K.1    Ugawa, Y.2    Iwamoto, M.3    Higo, H.4
  • 49
    • 34547569191 scopus 로고    scopus 로고
    • STAMP: A web tool for exploring DNA-binding motif similarities
    • Mahony, S. & Benos, P. V. STAMP: a web tool for exploring DNA-binding motif similarities. Nucleic Acids Res. 35, W253-W258 (2007).
    • (2007) Nucleic Acids Res , vol.35
    • Mahony, S.1    Benos, P.V.2
  • 50
    • 84857483338 scopus 로고    scopus 로고
    • A gene regulatory network for root epidermis cell differentiation in Arabidopsis
    • Bruex, A. et al. A gene regulatory network for root epidermis cell differentiation in Arabidopsis. PLoS Genet 8, e1002446 (2012).
    • (2012) PLoS Genet , vol.8
    • Bruex, A.1
  • 51
    • 0029257141 scopus 로고
    • Functional dissection of an abscisic acid (ABA)-inducible gene reveals two independent ABA-responsive complexes each containing aG-box and a novel cis-acting element
    • Shen, Q. & Ho, T. Functional dissection of an abscisic acid (ABA)-inducible gene reveals two independent ABA-responsive complexes each containing aG-box and a novel cis-acting element. Plant Cell 7, 295-307 (1995).
    • (1995) Plant Cell , vol.7 , pp. 295-307
    • Shen, Q.1    Ho, T.2
  • 53
    • 78651339097 scopus 로고    scopus 로고
    • AGRIS: The Arabidopsis gene regulatory information server, an update
    • Yilmaz, A. et al. AGRIS: the Arabidopsis gene regulatory information server, an update. Nucleic Acids Res. 39, D1118-D1122 (2011).
    • (2011) Nucleic Acids Res , vol.39
    • Yilmaz, A.1
  • 56
    • 0033635955 scopus 로고    scopus 로고
    • Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development
    • Xie, Q., Frugis, G., Colgan, D. & Chua, N.-H. Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev. 14, 3024-3036 (2000).
    • (2000) Genes Dev , vol.14 , pp. 3024-3036
    • Xie, Q.1    Frugis, G.2    Colgan, D.3    Chua, N.-H.4
  • 57
    • 36448967092 scopus 로고    scopus 로고
    • Transposase-derived transcription factors regulate light signaling in Arabidopsis
    • DOI 10.1126/science.1146281
    • Lin, R. et al. Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science 318, 1302-1305 (2007). (Pubitemid 350172895)
    • (2007) Science , vol.318 , Issue.5854 , pp. 1302-1305
    • Lin, R.1    Ding, L.2    Casola, C.3    Ripoll, D.R.4    Feschotte, C.5    Wang, H.6
  • 58
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: Interactive sequence similarity searching
    • Finn, R. D., Clements, J. & Eddy, S. R. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 39, W29-W37 (2011).
    • (2011) Nucleic Acids Res. , vol.39
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 59
    • 75549090603 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Finn, R. D. et al. The Pfam protein families database. Nucleic Acids Res. 38, D211-D222 (2010).
    • (2010) Nucleic Acids Res , vol.38
    • Finn, R.D.1
  • 60
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
    • Quast, C. et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41, D590-D596 (2013).
    • (2013) Nucleic Acids Res , vol.41
    • Quast, C.1
  • 61
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team. R: A Language and Environment for Statistical Computing. (R Foundation for Statistical Computing, Vienna, Austria, 2012).
    • (2012) R: A Language and Environment for Statistical Computing
  • 62
    • 2342647392 scopus 로고    scopus 로고
    • Statistical analysis of over-represented words in human promoter sequences
    • DOI 10.1093/nar/gkh246
    • Mariño-Raḿrez, L., Spouge, J. L., Kanga, G. C.& Landsman, D. Statistical analysis of over-represented words in human promoter sequences. Nucleic Acids Res. 32, 949-958 (2004). (Pubitemid 38854697)
    • (2004) Nucleic Acids Research , vol.32 , Issue.3 , pp. 949-958
    • Marino-Ramirez, L.1    Spouge, J.L.2    Kanga, G.C.3    Landsman, D.4
  • 63
    • 79951945172 scopus 로고    scopus 로고
    • Prediction of transcriptional regulatory elements for plant hormone responses based on microarray data
    • Yamamoto, Y. Y. et al. Prediction of transcriptional regulatory elements for plant hormone responses based on microarray data. BMC Plant Biol. 11, 39 (2011).
    • (2011) BMC Plant Biol , vol.11 , pp. 39
    • Yamamoto, Y.Y.1
  • 65
    • 84858602406 scopus 로고    scopus 로고
    • InterPro in 2011: New developments in the family and domain prediction database
    • Hunter, S. et al. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 40, D306-D312 (2012).
    • (2012) Nucleic Acids Res , vol.40
    • Hunter, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.