FootPrinter: A program designed for phylogenetic footprinting

Nucleic Acids Research

Volumn 31, Issue 13, 2003, Pages 3840-3842

  Blanchette, Mathieu ^b   Tompa, Martin ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

^b University of California Santa Cruz   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ANALYTIC METHOD; ARTICLE; COMPUTER AIDED DESIGN; COMPUTER INTERFACE; COMPUTER PREDICTION; COMPUTER PROGRAM; CONTROLLED STUDY; GENETIC CONSERVATION; HUMAN; NONHUMAN; ONLINE SYSTEM; PHYLOGENY; PRIORITY JOURNAL; PROTEIN FOOTPRINTING; PROTEIN MOTIF; REGULATORY SEQUENCE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; ALGORITHM; DNA SEQUENCE; INTERNET; METHODOLOGY; NUCLEOTIDE SEQUENCE;

ALGORITHMS; CONSERVED SEQUENCE; INTERNET; PHYLOGENY; REGULATORY SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 0041589546     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg606     Document Type: Article

References (5)

1. Tagle,D., Koop,B., Goodman,M., Slightom,J., Hess,D. and Jones,R. (1988) Embryonic E and γ globin genes of a prosimian primate (Galago crassicaudatus); nueleotide and amino acid sequences, developmental regulation and phylogenetic footprints. J. Mol. Biol., 203, 439-455.
2. Duret,L. and Bucher,P. (1997) Searching for regulatory elements in human noncoding sequences. Curr. Op. Struct. Biol., 7, 399-405.
3. Blanchette,M., Schwikowski,B. and Tompa,M. (2002) Algorithms for phylogenetic footprinting. J. Comput. Biol., 9, 211-223.
4. Blanchette,M. and Tompa,M. (2002) Discovery of regulatory elements by a computational method for phylogenetic footprinting. Genome Res., 12, 739-748.
5. Blanchette,M., Kwong,S. and Tompa,M. (2003) An empirical comparison of tools for phylogenetic footprinting. In Third IEEE Symposium on Bioinformatics and Bioengineering, IEEE Press, Los Alamitos, CA, pp. 69-78.