-
1
-
-
84866739808
-
Drug discovery in pharmaceutical industry: Productivity challenges and trends
-
Khanna, I. Drug discovery in pharmaceutical industry: Productivity challenges and trends Drug Discovery Today 2012, 17, 1088-102
-
(2012)
Drug Discovery Today
, vol.17
, pp. 1088-1102
-
-
Khanna, I.1
-
2
-
-
35248817286
-
Modeling promiscuity based on in vitro safety pharmacology profiling data
-
Azzaoui, K.; Hamon, J.; Faller, B.; Whitebread, S.; Jacoby, E.; Bender, A.; Jenkins, J. L.; Urban, L. Modeling promiscuity based on in vitro safety pharmacology profiling data ChemMedChem. 2007, 2 (6) 874-880
-
(2007)
ChemMedChem.
, vol.2
, Issue.6
, pp. 874-880
-
-
Azzaoui, K.1
Hamon, J.2
Faller, B.3
Whitebread, S.4
Jacoby, E.5
Bender, A.6
Jenkins, J.L.7
Urban, L.8
-
3
-
-
84857380650
-
Rational approaches to improving selectivity in drug design
-
Huggins, D. J.; Sherman, W.; Tidor, B. Rational approaches to improving selectivity in drug design J. Med. Chem. 2012, 55 (4) 1424-1444
-
(2012)
J. Med. Chem.
, vol.55
, Issue.4
, pp. 1424-1444
-
-
Huggins, D.J.1
Sherman, W.2
Tidor, B.3
-
4
-
-
4344668661
-
Drug repositioning: Identifying and developing new uses for existing drugs
-
Ashburn, T. T.; Thor, K. B. Drug repositioning: Identifying and developing new uses for existing drugs Nat. Rev. Drug Discovery 2004, 3 (8) 673-683
-
(2004)
Nat. Rev. Drug Discovery
, vol.3
, Issue.8
, pp. 673-683
-
-
Ashburn, T.T.1
Thor, K.B.2
-
5
-
-
84873076688
-
In silico drug repositioning-what we need to know
-
Liu, Z.; Fang, H.; Reagan, K.; Xu, X.; Mendrick, D. L.; Slikker, W., Jr; Tong, W. In silico drug repositioning-what we need to know Drug Discovery Today 2013, 18 (3) 110-115
-
(2013)
Drug Discovery Today
, vol.18
, Issue.3
, pp. 110-115
-
-
Liu, Z.1
Fang, H.2
Reagan, K.3
Xu, X.4
Mendrick, D.L.5
Slikker Jr., W.6
Tong, W.7
-
6
-
-
79953695916
-
In silico repositioning of approved drugs for rare and neglected diseases
-
Ekins, S.; Williams, A. J.; Krasowski, M. D.; Freundlich, J. S. In silico repositioning of approved drugs for rare and neglected diseases Drug Discovery Today 2011, 16 (7) 298-310
-
(2011)
Drug Discovery Today
, vol.16
, Issue.7
, pp. 298-310
-
-
Ekins, S.1
Williams, A.J.2
Krasowski, M.D.3
Freundlich, J.S.4
-
7
-
-
4644271084
-
Magic shotguns versus magic bullets: Selectively non-selective drugs for mood disorders and schizophrenia
-
Roth, B. L.; Sheer, D. J.; Kroeze, W. K. Magic shotguns versus magic bullets: Selectively non-selective drugs for mood disorders and schizophrenia Nat. Rev. Drug Discovery 2004, 3 (4) 353-359
-
(2004)
Nat. Rev. Drug Discovery
, vol.3
, Issue.4
, pp. 353-359
-
-
Roth, B.L.1
Sheer, D.J.2
Kroeze, W.K.3
-
8
-
-
84876933802
-
Shifting from the single to the multitarget paradigm in drug discovery
-
Medina-Franco, J. L.; Giulianotti, M. A.; Welmaker, G. S.; Houghten, R. A. Shifting from the single to the multitarget paradigm in drug discovery Drug Discovery Today 2013, 18, 495-501
-
(2013)
Drug Discovery Today
, vol.18
, pp. 495-501
-
-
Medina-Franco, J.L.1
Giulianotti, M.A.2
Welmaker, G.S.3
Houghten, R.A.4
-
9
-
-
84855849188
-
The role of fragment-based and computational methods in polypharmacology
-
Bottegoni, G.; Favia, A. D.; Recanatini, M.; Cavalli, A. The role of fragment-based and computational methods in polypharmacology Drug Discovery Today 2012, 17 (1) 23-34
-
(2012)
Drug Discovery Today
, vol.17
, Issue.1
, pp. 23-34
-
-
Bottegoni, G.1
Favia, A.D.2
Recanatini, M.3
Cavalli, A.4
-
10
-
-
33644876210
-
Drugbank: A comprehensive resource for in silico drug discovery and exploration
-
(, accessed December 2013). - D672
-
Wishart, D. S.; Knox, C.; Guo, A. C.; Shrivastava, S.; Hassanali, M.; Stothard, P.; Chang, Z.; Woolsey, J. Drugbank: A comprehensive resource for in silico drug discovery and exploration. Nucleic Acids Res. 2006, 34, D668-D672 (www.drugbank.ca, accessed December 2013).
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 668
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Shrivastava, S.4
Hassanali, M.5
Stothard, P.6
Chang, Z.7
Woolsey, J.8
-
11
-
-
59849106371
-
Protein promiscuity and its implications for biotechnology
-
Nobeli, I.; Favia, A. D.; Thornton, J. M. Protein promiscuity and its implications for biotechnology Nat. Biotechnol. 2009, 27 (2) 157-167
-
(2009)
Nat. Biotechnol.
, vol.27
, Issue.2
, pp. 157-167
-
-
Nobeli, I.1
Favia, A.D.2
Thornton, J.M.3
-
12
-
-
34548319111
-
In silico pharmacology for drug discovery: Applications to targets and beyond
-
Ekins, S.; Mestres, J.; Testa, B. In silico pharmacology for drug discovery: Applications to targets and beyond Br. J. Pharmacol. 2007, 152, 21-37
-
(2007)
Br. J. Pharmacol.
, vol.152
, pp. 21-37
-
-
Ekins, S.1
Mestres, J.2
Testa, B.3
-
13
-
-
39049114500
-
Novel paradigms for drug discovery: Computational multitarget screening
-
Jenwitheesuk, E.; Horst, J. A.; Rivas, K. L.; Van Voorhis, W. C.; Samudrala, R. Novel paradigms for drug discovery: Computational multitarget screening Trends Pharmacol. Sci. 2008, 29 (2) 62-71
-
(2008)
Trends Pharmacol. Sci.
, vol.29
, Issue.2
, pp. 62-71
-
-
Jenwitheesuk, E.1
Horst, J.A.2
Rivas, K.L.3
Van Voorhis, W.C.4
Samudrala, R.5
-
14
-
-
79952595140
-
Cross-target view to feature selection: Identification of molecular interaction features in ligand-target space
-
Niijima, S.; Yabuuchi, H.; Okuno, Y. Cross-target view to feature selection: Identification of molecular interaction features in ligand-target space J. Chem. Inf. Model. 2010, 51 (1) 15-24
-
(2010)
J. Chem. Inf. Model.
, vol.51
, Issue.1
, pp. 15-24
-
-
Niijima, S.1
Yabuuchi, H.2
Okuno, Y.3
-
15
-
-
33846876695
-
Relating protein pharmacology by ligand chemistry
-
Keiser, M. J.; Roth, B. L.; Armbruster, B. L.; Ernsberger, P.; Irwin, J. J.; Shoichet, B. K. Relating protein pharmacology by ligand chemistry Nat. Biotechnol. 2007, 25 (2) 197-206
-
(2007)
Nat. Biotechnol.
, vol.25
, Issue.2
, pp. 197-206
-
-
Keiser, M.J.1
Roth, B.L.2
Armbruster, B.L.3
Ernsberger, P.4
Irwin, J.J.5
Shoichet, B.K.6
-
16
-
-
84863399669
-
Exploring polypharmacology using a ROCS-based target fishing approach
-
AbdulHameed, M. D. M.; Chaudhury, S.; Singh, N.; Sun, H.; Wallqvist, A.; Tawa, G. J. Exploring polypharmacology using a ROCS-based target fishing approach J. Chem. Inf. Model. 2012, 52 (2) 492-505
-
(2012)
J. Chem. Inf. Model.
, vol.52
, Issue.2
, pp. 492-505
-
-
Abdulhameed, M.D.M.1
Chaudhury, S.2
Singh, N.3
Sun, H.4
Wallqvist, A.5
Tawa, G.J.6
-
17
-
-
79953212647
-
ReverseScreen3D: A structure-based ligand matching method to identify protein targets
-
Kinnings, S. L.; Jackson, R. M. ReverseScreen3D: A structure-based ligand matching method to identify protein targets J. Chem. Inf. Model. 2011, 51 (3) 624-634
-
(2011)
J. Chem. Inf. Model.
, vol.51
, Issue.3
, pp. 624-634
-
-
Kinnings, S.L.1
Jackson, R.M.2
-
18
-
-
33750994920
-
Bridging chemical and biological space: "Target fishing" using 2D and 3D molecular descriptors
-
Nettles, J. H.; Jenkins, A.; Bender, A.; Deng, Z.; Davies, J. W.; Glick, M. Bridging chemical and biological space: "target fishing" using 2D and 3D molecular descriptors J. Med. Chem. 2006, 49 (23) 6802-6810
-
(2006)
J. Med. Chem.
, vol.49
, Issue.23
, pp. 6802-6810
-
-
Nettles, J.H.1
Jenkins, A.2
Bender, A.3
Deng, Z.4
Davies, J.W.5
Glick, M.6
-
19
-
-
54249155522
-
Network pharmacology: The next paradigm in drug discovery
-
Hopkins, A. L. Network pharmacology: The next paradigm in drug discovery Nat. Chem. Biol. 2008, 4 (11) 682-690
-
(2008)
Nat. Chem. Biol.
, vol.4
, Issue.11
, pp. 682-690
-
-
Hopkins, A.L.1
-
21
-
-
68949119585
-
The topology of drug-target interaction networks: Implicit dependence on drug properties and target families
-
Mestres, J.; Gregori-Puigjane, E.; Valverde, S.; Sole, R. V. The topology of drug-target interaction networks: Implicit dependence on drug properties and target families Mol. BioSyst. 2009, 5 (9) 1051-1057
-
(2009)
Mol. BioSyst.
, vol.5
, Issue.9
, pp. 1051-1057
-
-
Mestres, J.1
Gregori-Puigjane, E.2
Valverde, S.3
Sole, R.V.4
-
22
-
-
79958774039
-
In silico target profiling of one billion molecules
-
Nonell-Canals, A.; Mestres, J. In silico target profiling of one billion molecules Mol. Inf. 2011, 30 (5) 405-409
-
(2011)
Mol. Inf.
, vol.30
, Issue.5
, pp. 405-409
-
-
Nonell-Canals, A.1
Mestres, J.2
-
23
-
-
47249146126
-
Drug target identification using side-effect similarity
-
Campillos, M.; Kuhn, M.; Gavin, A.-C.; Jensen, L. J.; Bork, P. Drug target identification using side-effect similarity Science 2008, 321, 263-266
-
(2008)
Science
, vol.321
, pp. 263-266
-
-
Campillos, M.1
Kuhn, M.2
Gavin, A.-C.3
Jensen, L.J.4
Bork, P.5
-
24
-
-
77952683248
-
Structure-based approaches to target fishing and ligand profiling
-
Rognan, D. Structure-based approaches to target fishing and ligand profiling Mol. Inf. 2010, 29 (3) 176-187
-
(2010)
Mol. Inf.
, vol.29
, Issue.3
, pp. 176-187
-
-
Rognan, D.1
-
25
-
-
45749117025
-
Ranking targets in structure-based virtual screening of three-dimensional protein libraries: Methods and problems
-
Kellenberger, E.; Foata, N.; Rognan, D. Ranking targets in structure-based virtual screening of three-dimensional protein libraries: Methods and problems J. Chem. Inf. Model. 2008, 48 (5) 1014-1025
-
(2008)
J. Chem. Inf. Model.
, vol.48
, Issue.5
, pp. 1014-1025
-
-
Kellenberger, E.1
Foata, N.2
Rognan, D.3
-
26
-
-
84883217711
-
Structural Properties or Non-Traditional Drug Targets Present New Challenges for Virtual Screening
-
Gowthaman, R.; Deeds, E. J.; Karanicolas, J. Structural Properties or Non-Traditional Drug Targets Present New Challenges for Virtual Screening J. Chem. Inf. Model. 2013, 53 (8) 2073-2081
-
(2013)
J. Chem. Inf. Model.
, vol.53
, Issue.8
, pp. 2073-2081
-
-
Gowthaman, R.1
Deeds, E.J.2
Karanicolas, J.3
-
27
-
-
33750991346
-
Benchmarking sets for molecular docking
-
Huang, N.; Shoichet, B. K.; Irwin, J. J. Benchmarking sets for molecular docking J. Med. Chem. 2006, 49 (23) 6789-6801
-
(2006)
J. Med. Chem.
, vol.49
, Issue.23
, pp. 6789-6801
-
-
Huang, N.1
Shoichet, B.K.2
Irwin, J.J.3
-
28
-
-
0035342428
-
Ligand-protein inverse docking and its potential use in the computer search of protein targets of a small molecule
-
Chen, Y. Z.; Zhi, D. G. Ligand-protein inverse docking and its potential use in the computer search of protein targets of a small molecule Proteins 2001, 43 (2) 21-226
-
(2001)
Proteins
, vol.43
, Issue.2
, pp. 21-226
-
-
Chen, Y.Z.1
Zhi, D.G.2
-
29
-
-
0035217619
-
Prediction of potential toxicity and side effect protein targets of a small molecules by a ligand-protein inverse docking approach
-
Chen, Y. Z.; Ung, C. Y. Prediction of potential toxicity and side effect protein targets of a small molecules by a ligand-protein inverse docking approach J. Mol. Graph. Model. 2001, 20 (3) 199-218
-
(2001)
J. Mol. Graph. Model.
, vol.20
, Issue.3
, pp. 199-218
-
-
Chen, Y.Z.1
Ung, C.Y.2
-
30
-
-
0036084258
-
TTD: Therapeutic Target Database
-
Chen, X.; Ji, Z. L.; Chen, Y. Z. TTD: Therapeutic Target Database Nucleic Acids Res. 2002, 30 (1) 412-415
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.1
, pp. 412-415
-
-
Chen, X.1
Ji, Z.L.2
Chen, Y.Z.3
-
31
-
-
40549130652
-
PDTD: A web-accessible protein database for drug target identification
-
Gao, Z.; Li, H.; Zhang, H.; Liu, X.; Kang, L.; Luo, X.; Zhu, W.; Chen, K.; Wang, X.; Jiang, H. PDTD: A web-accessible protein database for drug target identification BMC Bioinf. 2008, 9 (1) 104
-
(2008)
BMC Bioinf.
, vol.9
, Issue.1
, pp. 104
-
-
Gao, Z.1
Li, H.2
Zhang, H.3
Liu, X.4
Kang, L.5
Luo, X.6
Zhu, W.7
Chen, K.8
Wang, X.9
Jiang, H.10
-
32
-
-
33747829590
-
TarFisDock: A web server for identifying drug targets with docking approach
-
Li, H.; Gao, Z.; Kang, L.; Zhang, H.; Yang, K.; Yu, K.; Luo, X.; Zhu, W.; Chen, K.; Shen, J.; Wang, X.; Jiang, H. TarFisDock: A web server for identifying drug targets with docking approach Nucleic Acids Res. 2006, 34, W219-W224
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Li, H.1
Gao, Z.2
Kang, L.3
Zhang, H.4
Yang, K.5
Yu, K.6
Luo, X.7
Zhu, W.8
Chen, K.9
Shen, J.10
Wang, X.11
Jiang, H.12
-
33
-
-
68249128647
-
Harvesting Candidate Genes Responsible for Serious Adverse Drug Reactions from a Chemical-Protein Interactome
-
Yang, L.; Chen, J.; He, L. Harvesting Candidate Genes Responsible for Serious Adverse Drug Reactions from a Chemical-Protein Interactome PLoS Comput. Biol. 2009, 5, e1000441
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. 1000441
-
-
Yang, L.1
Chen, J.2
He, L.3
-
34
-
-
79953669856
-
Exploring Off-Targets and Off-Systems for Adverse Drug Reactiongs via Chemical-Protein Interactome-Clopazine-Induced Agranulocytosis as a Case Study
-
Yang, L.; Wang, K.; Chen, J.; Jegga, A. G.; Luo, H.; Shi, L.; Wan, C.; Guo, X.; Qin, S.; He, G.; Feng, G.; He, L. Exploring Off-Targets and Off-Systems for Adverse Drug Reactiongs via Chemical-Protein Interactome-Clopazine-Induced Agranulocytosis as a Case Study PLoS Comput. Biol. 2011, 7, e1002016
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. 1002016
-
-
Yang, L.1
Wang, K.2
Chen, J.3
Jegga, A.G.4
Luo, H.5
Shi, L.6
Wan, C.7
Guo, X.8
Qin, S.9
He, G.10
Feng, G.11
He, L.12
-
35
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, B. E. The Protein Data Bank Nucleic Acids Res. 2000, 28, 235-242
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, B.E.8
-
36
-
-
33646228824
-
Sc-PDB: An annotated database of druggable binding sites from the protein databank
-
Kellenberger, E.; Muller, P.; Schalon, C.; Bret, G.; Foata, N.; Rognan, D. sc-PDB: An annotated database of druggable binding sites from the protein databank J. Chem. Inf. Model. 2006, 46 (2) 717-727
-
(2006)
J. Chem. Inf. Model.
, vol.46
, Issue.2
, pp. 717-727
-
-
Kellenberger, E.1
Muller, P.2
Schalon, C.3
Bret, G.4
Foata, N.5
Rognan, D.6
-
37
-
-
79954520873
-
Sc-PDB: A database for identifying variations and multiplicity of 'druggable' binding sites in proteins
-
Meslamani, J.; Rognan, D.; Kellenberger, E. sc-PDB: A database for identifying variations and multiplicity of 'druggable' binding sites in proteins Bioinformatics 2011, 27 (9) 1324-1326
-
(2011)
Bioinformatics
, vol.27
, Issue.9
, pp. 1324-1326
-
-
Meslamani, J.1
Rognan, D.2
Kellenberger, E.3
-
38
-
-
1542286205
-
Recovering the true targets of specific ligands by virtual screening of the protein data bank
-
Paul, N.; Kellenberger, E.; Bret, G.; Müller, P.; Rognan, D. Recovering the true targets of specific ligands by virtual screening of the protein data bank Proteins 2004, 54 (4) 671-680
-
(2004)
Proteins
, vol.54
, Issue.4
, pp. 671-680
-
-
Paul, N.1
Kellenberger, E.2
Bret, G.3
Müller, P.4
Rognan, D.5
-
39
-
-
33750712502
-
In Silico-Guided Target Identification of a Scaffold-Focused Library: 1,3,5-Triazepan-2,6-diones as Novel Phospholipase A2 Inhibitors
-
Muller, P.; Lena, G.; Boilard, E.; Bezzine, S.; Lambeau, G.; Guichard, G.; Rognan, D. In Silico-Guided Target Identification of a Scaffold-Focused Library: 1,3,5-Triazepan-2,6-diones as Novel Phospholipase A2 Inhibitors J. Med. Chem. 2006, 49, 6768-6778
-
(2006)
J. Med. Chem.
, vol.49
, pp. 6768-6778
-
-
Muller, P.1
Lena, G.2
Boilard, E.3
Bezzine, S.4
Lambeau, G.5
Guichard, G.6
Rognan, D.7
-
40
-
-
83555178458
-
The interprotein scoring noises in glide docking scores
-
Wang, W.; Zhou, X.; He, W.; Fan, Y.; Chen, Y.; Chen, X. The interprotein scoring noises in glide docking scores Proteins 2011, 80 (1) 169-183
-
(2011)
Proteins
, vol.80
, Issue.1
, pp. 169-183
-
-
Wang, W.1
Zhou, X.2
He, W.3
Fan, Y.4
Chen, Y.5
Chen, X.6
-
41
-
-
67649100477
-
A chemogenomics view on protein-ligand spaces
-
Strömbergsson, H.; Kleywegt, G. J. A chemogenomics view on protein-ligand spaces BMC Bioinf. 2009, 10 (6) S13
-
(2009)
BMC Bioinf.
, vol.10
, Issue.6
, pp. 13
-
-
Strömbergsson, H.1
Kleywegt, G.J.2
-
42
-
-
33750981540
-
Do structurally similar ligands bind in a similar fashion?
-
Boström, J.; Hogner, A.; Schmitt, S. Do structurally similar ligands bind in a similar fashion? J. Med. Chem. 2006, 49 (23) 6716-6725
-
(2006)
J. Med. Chem.
, vol.49
, Issue.23
, pp. 6716-6725
-
-
Boström, J.1
Hogner, A.2
Schmitt, S.3
-
43
-
-
84884985535
-
CONFECT: Conformations from an Expert Collection of Torsion Patterns
-
Schärfer, C.; Schulz-Gasch, T.; Hert, J.; Heinzerling, L.; Schulz, B.; Inhester, T.; Stahl, M.; Rarey, M. CONFECT: Conformations from an Expert Collection of Torsion Patterns ChemMedChem. 2013, 8 (10) 1690-1700
-
(2013)
ChemMedChem.
, vol.8
, Issue.10
, pp. 1690-1700
-
-
Schärfer, C.1
Schulz-Gasch, T.2
Hert, J.3
Heinzerling, L.4
Schulz, B.5
Inhester, T.6
Stahl, M.7
Rarey, M.8
-
44
-
-
66149105428
-
Beyond the virtual screening paradigm: Structure-based searching for new lead compounds
-
Schlosser, J.; Rarey, M. Beyond the virtual screening paradigm: Structure-based searching for new lead compounds J. Chem. Inf. Model. 2009, 49, 800-809
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 800-809
-
-
Schlosser, J.1
Rarey, M.2
-
45
-
-
34247344168
-
TrixX: Structure-based molecule indexing for large-scale virtual screening in sublinear time
-
Schellhammer, I.; Rarey, M. TrixX: Structure-based molecule indexing for large-scale virtual screening in sublinear time J. Comput. Aided Mol. Des. 2007, 21 (5) 223-238
-
(2007)
J. Comput. Aided Mol. Des.
, vol.21
, Issue.5
, pp. 223-238
-
-
Schellhammer, I.1
Rarey, M.2
-
46
-
-
24344486420
-
FastBit: An efficient indexing technology for accelerating data-intensive science
-
Wu, K. FastBit: An efficient indexing technology for accelerating data-intensive science. J. Phys.: Conf. Ser. 2005, 16, 556.
-
(2005)
J. Phys.: Conf. Ser.
, vol.16
, pp. 556
-
-
Wu, K.1
-
47
-
-
0024664539
-
SMILES. 2. Algorithm for generation of unique SMILES notation
-
Weininger, D.; Weininger, A.; Weininger, J. SMILES. 2. Algorithm for generation of unique SMILES notation J. Chem. Inf. Comput. Sci. 1989, 29, 97-101
-
(1989)
J. Chem. Inf. Comput. Sci.
, vol.29
, pp. 97-101
-
-
Weininger, D.1
Weininger, A.2
Weininger, J.3
-
48
-
-
84887113038
-
MONA-Interactive manipulation of molecule collections
-
Hilbig, M.; Urbaczek, S.; Groth, I.; Heuser, S.; Rarey, M. MONA-Interactive manipulation of molecule collections J. Cheminf. 2013, 5, 38
-
(2013)
J. Cheminf.
, vol.5
, pp. 38
-
-
Hilbig, M.1
Urbaczek, S.2
Groth, I.3
Heuser, S.4
Rarey, M.5
-
49
-
-
84555177559
-
NAOMI: On the Almost Trivial Task of Reading Molecules from Different File formats
-
Urbaczek, S.; Kolodzik, A.; Fischer, J. R.; Lippert, T.; Heuser, S.; Groth, I.; Schulz-Gasch, T.; Rarey, M. NAOMI: On the Almost Trivial Task of Reading Molecules from Different File formats J. Chem. Inf. Model. 2011, 51 (1) 3199-3207
-
(2011)
J. Chem. Inf. Model.
, vol.51
, Issue.1
, pp. 3199-3207
-
-
Urbaczek, S.1
Kolodzik, A.2
Fischer, J.R.3
Lippert, T.4
Heuser, S.5
Groth, I.6
Schulz-Gasch, T.7
Rarey, M.8
-
50
-
-
84900532536
-
Protoss: A holistic approach to predict tautomers and protonation states in protein-ligand complexes
-
DOI: 10.1186/1758-2946-6-12
-
Bietz, S.; Urbazek, S.; Rarey, M. Protoss: A holistic approach to predict tautomers and protonation states in protein-ligand complexes. J. Cheminf. 2014, DOI: 10.1186/1758-2946-6-12.
-
(2014)
J. Cheminf.
-
-
Bietz, S.1
Urbazek, S.2
Rarey, M.3
-
51
-
-
33847347192
-
Diverse, high-quality test set for the validation of protein-ligand docking performance
-
Hartshorn, M. J.; Verdonk, M. L.; Chessari, G.; Brewerton, S. C.; Mooij, W.; Mortenson, P. N.; Murray, C. W. Diverse, high-quality test set for the validation of protein-ligand docking performance J. Med. Chem. 2007, 50 (4) 726-741
-
(2007)
J. Med. Chem.
, vol.50
, Issue.4
, pp. 726-741
-
-
Hartshorn, M.J.1
Verdonk, M.L.2
Chessari, G.3
Brewerton, S.C.4
Mooij, W.5
Mortenson, P.N.6
Murray, C.W.7
-
52
-
-
0030599010
-
A fast flexible docking method using an incremental construction algorithm
-
Rarey, M.; Kramer, B.; Lengauer, T.; Klebe, G. A fast flexible docking method using an incremental construction algorithm J. Mol. Biol. 1996, 261 (3) 470-489
-
(1996)
J. Mol. Biol.
, vol.261
, Issue.3
, pp. 470-489
-
-
Rarey, M.1
Kramer, B.2
Lengauer, T.3
Klebe, G.4
-
53
-
-
84865224649
-
Substantial improvements in large-scale redocking and screening using the novel HYDE scoring function
-
Schneider, N.; Hindle, S.; Lange, G.; Klein, R.; Albrecht, J.; Briem, H.; Beyer, K.; Claußen, H.; Gastreich, M.; Lemmen, C.; Rarey, M. Substantial improvements in large-scale redocking and screening using the novel HYDE scoring function J. Comput. Aided Mol. Des. 2012, 26, 701-723
-
(2012)
J. Comput. Aided Mol. Des.
, vol.26
, pp. 701-723
-
-
Schneider, N.1
Hindle, S.2
Lange, G.3
Klein, R.4
Albrecht, J.5
Briem, H.6
Beyer, K.7
Claußen, H.8
Gastreich, M.9
Lemmen, C.10
Rarey, M.11
-
54
-
-
0028466540
-
Comparison of Automatic Three-Dimensional Model Builders Using 639 X-Ray Structures
-
Sadowski, J.; Gasteiger, J.; Klebe, G. Comparison of Automatic Three-Dimensional Model Builders Using 639 X-Ray Structures J. Chem. Inf. Comput. Sci. 1994, 34, 1000-1008
-
(1994)
J. Chem. Inf. Comput. Sci.
, vol.34
, pp. 1000-1008
-
-
Sadowski, J.1
Gasteiger, J.2
Klebe, G.3
-
55
-
-
84862011491
-
Protein-ligand-based pharmacophores: Generation and utility assessment in computational ligand profiling
-
Meslamani, J.; Li, J.; Sutter, J.; Stevens, A.; Bertrand, H.-O.; Rognan, D. Protein-ligand-based pharmacophores: Generation and utility assessment in computational ligand profiling J. Chem. Inf. Model. 2012, 52 (4) 943-955
-
(2012)
J. Chem. Inf. Model.
, vol.52
, Issue.4
, pp. 943-955
-
-
Meslamani, J.1
Li, J.2
Sutter, J.3
Stevens, A.4
Bertrand, H.-O.5
Rognan, D.6
-
56
-
-
84903298918
-
-
accessed January
-
http://cheminfo.u-strasbg.fr, accessed January 2013.
-
(2013)
-
-
-
57
-
-
34247343346
-
Surflex-Dock 2.1: Robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search
-
Jain, A. N. Surflex-Dock 2.1: Robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search J. Comput. Aided Mol. Des. 2007, 21 (5) 281-306
-
(2007)
J. Comput. Aided Mol. Des.
, vol.21
, Issue.5
, pp. 281-306
-
-
Jain, A.N.1
-
58
-
-
62449330667
-
Empirical scoring functions for advanced protein-ligand docking with PLANTS
-
Korb, O.; Stutzle, T.; Exner, T. E. Empirical scoring functions for advanced protein-ligand docking with PLANTS J. Chem. Inf. Model. 2009, 49 (1) 84-96
-
(2009)
J. Chem. Inf. Model.
, vol.49
, Issue.1
, pp. 84-96
-
-
Korb, O.1
Stutzle, T.2
Exner, T.E.3
|