-
1
-
-
0019363396
-
Organization and expression of eucaryotic split genes coding for proteins
-
Breathnach, R. and Chambon, P. (1981) Organization and expression of eucaryotic split genes coding for proteins. Annu. Rev. Biochem., 50, 349-383.
-
(1981)
Annu. Rev. Biochem.
, vol.50
, pp. 349-383
-
-
Breathnach, R.1
Chambon, P.2
-
2
-
-
67649846597
-
Protein-coding gene promoters in Methanocaldococcus (Methanococcus) jannaschii
-
Zhang, J., Li, E. and Olsen, G.J. (2009) Protein-coding gene promoters in Methanocaldococcus (Methanococcus) jannaschii. Nucleic Acids Res., 37, 3588-3601.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 3588-3601
-
-
Zhang, J.1
Li, E.2
Olsen, G.J.3
-
3
-
-
79959298162
-
Recent advances in the understanding of archaeal transcription
-
Grohmann, D. and Werner, F. (2011) Recent advances in the understanding of archaeal transcription. Curr. Opin. Microbiol., 14, 328-334.
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 328-334
-
-
Grohmann, D.1
Werner, F.2
-
4
-
-
81255210794
-
Transcriptional regulation in Saccharomyces cerevisiae: Transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators
-
Hahn, S. and Young, E.T. (2011) Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators. Genetics, 189, 705-736.
-
(2011)
Genetics
, vol.189
, pp. 705-736
-
-
Hahn, S.1
Young, E.T.2
-
5
-
-
0033598809
-
Orientation of the transcription preinitiation complex in archaea
-
Bell, S.D., Kosa, P.L., Sigler, P.B. and Jackson, S.P. (1999) Orientation of the transcription preinitiation complex in archaea. Proc. Natl. Acad. Sci. U.S.A., 96, 13662-13667.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 13662-13667
-
-
Bell, S.D.1
Kosa, P.L.2
Sigler, P.B.3
Jackson, S.P.4
-
6
-
-
0029860589
-
Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase
-
Hausner, W., Wettach, J., Hethke, C. and Thomm, M. (1996) Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase. J. Biol. Chem., 271, 30144-30148.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 30144-30148
-
-
Hausner, W.1
Wettach, J.2
Hethke, C.3
Thomm, M.4
-
7
-
-
0033573008
-
TATA element recognition by the TATA box-binding protein has been conserved throughout evolution
-
Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.H., Kodadek, T. and Burley, S.K. (1999) TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes Dev., 13, 3217-3230.
-
(1999)
Genes Dev.
, vol.13
, pp. 3217-3230
-
-
Patikoglou, G.A.1
Kim, J.L.2
Sun, L.3
Yang, S.H.4
Kodadek, T.5
Burley, S.K.6
-
8
-
-
0034602843
-
Structural basis of preinitiation complex assembly on human pol II promoters
-
Tsai, F.T. and Sigler, P.B. (2000) Structural basis of preinitiation complex assembly on human pol II promoters. Embo. J., 19, 25-36.
-
(2000)
Embo. J.
, vol.19
, pp. 25-36
-
-
Tsai, F.T.1
Sigler, P.B.2
-
9
-
-
78651504121
-
Evolution of multisubunit RNA polymerases in the three domains of life
-
Werner, F. and Grohmann, D. (2011) Evolution of multisubunit RNA polymerases in the three domains of life. Nat. Rev. Microbiol., 9, 85-98.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 85-98
-
-
Werner, F.1
Grohmann, D.2
-
10
-
-
78951496018
-
Archaeal RNA polymerase and transcription regulation
-
Jun, S.H., Reichlen, M.J., Tajiri, M. and Murakami, K.S. (2011) Archaeal RNA polymerase and transcription regulation. Crit. Rev. Biochem. Mol. Biol., 46, 27-40.
-
(2011)
Crit. Rev. Biochem. Mol. Biol.
, vol.46
, pp. 27-40
-
-
Jun, S.H.1
Reichlen, M.J.2
Tajiri, M.3
Murakami, K.S.4
-
11
-
-
54449093880
-
Crystal structure of Methanococcus jannaschii TATA box-binding protein
-
Adachi, N., Senda, M., Natsume, R., Senda, T. and Horikoshi, M. (2008) Crystal structure of Methanococcus jannaschii TATA box-binding protein. Genes Cells, 13, 1127-1140.
-
(2008)
Genes Cells
, vol.13
, pp. 1127-1140
-
-
Adachi, N.1
Senda, M.2
Natsume, R.3
Senda, T.4
Horikoshi, M.5
-
12
-
-
84857423235
-
Conservation between the RNA polymerase I, II, and III transcription initiation machineries
-
Vannini, A. and Cramer, P. (2012) Conservation between the RNA polymerase I, II, and III transcription initiation machineries. Mol. Cell., 45, 439-446.
-
(2012)
Mol. Cell.
, vol.45
, pp. 439-446
-
-
Vannini, A.1
Cramer, P.2
-
13
-
-
0035067057
-
Mechanism and regulation of transcription in archaea
-
Bell, S.D. and Jackson, S.P. (2001) Mechanism and regulation of transcription in archaea. Curr. Opin. Microbiol., 4, 208-213.
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 208-213
-
-
Bell, S.D.1
Jackson, S.P.2
-
14
-
-
79960440046
-
The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation
-
Grohmann, D., Nagy, J., Chakraborty, A., Klose, D., Fielden, D., Ebright, R.H., Michaelis, J. and Werner, F. (2011) The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation. Mol. Cell., 43, 263-274.
-
(2011)
Mol. Cell.
, vol.43
, pp. 263-274
-
-
Grohmann, D.1
Nagy, J.2
Chakraborty, A.3
Klose, D.4
Fielden, D.5
Ebright, R.H.6
Michaelis, J.7
Werner, F.8
-
15
-
-
0034644711
-
Mechanism of autoregulation by an archaeal transcriptional repressor
-
Bell, S.D. and Jackson, S.P. (2000) Mechanism of autoregulation by an archaeal transcriptional repressor. J. Biol. Chem., 275, 31624-31629.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 31624-31629
-
-
Bell, S.D.1
Jackson, S.P.2
-
16
-
-
0031990302
-
Sequence-specific DNA binding by the S shibatae TFIIB homolog, TFB, and its effect on promoter strength
-
Qureshi, S.A. and Jackson, S.P. (1998) Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strength. Mol. Cell., 1, 389-400.
-
(1998)
Mol. Cell.
, vol.1
, pp. 389-400
-
-
Qureshi, S.A.1
Jackson, S.P.2
-
17
-
-
0031562901
-
The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box
-
Kosa, P.F., Ghosh, G., DeDecker, B.S. and Sigler, P.B. (1997) The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box. Proc. Natl. Acad. Sci. U.S.A., 94, 6042-6047.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 6042-6047
-
-
Kosa, P.F.1
Ghosh, G.2
Dedecker, B.S.3
Sigler, P.B.4
-
18
-
-
0033598826
-
The structural basis for the oriented assembly of a TBP/TFB/promoter complex
-
Littlefield, O., Korkhin, Y. and Sigler, P.B. (1999) The structural basis for the oriented assembly of a TBP/TFB/promoter complex. Proc. Natl. Acad. Sci. U.S.A., 96, 13668-13673.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 13668-13673
-
-
Littlefield, O.1
Korkhin, Y.2
Sigler, P.B.3
-
19
-
-
0041856190
-
Native human TATA-binding protein simultaneously binds and bends promoter DNA without a slow isomerization step or TFIIB requirement
-
Masters, K.M., Parkhurst, K.M., Daugherty, M.A. and Parkhurst, L.J. (2003) Native human TATA-binding protein simultaneously binds and bends promoter DNA without a slow isomerization step or TFIIB requirement. J. Biol. Chem., 278, 31685-31690.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 31685-31690
-
-
Masters, K.M.1
Parkhurst, K.M.2
Daugherty, M.A.3
Parkhurst, L.J.4
-
20
-
-
64349107263
-
The TATA-binding protein core domain in solution variably bends TATA sequences via a three-step binding mechanism
-
Delgadillo, R.F., Whittington, J.E., Parkhurst, L.K. and Parkhurst, L.J. (2009) The TATA-binding protein core domain in solution variably bends TATA sequences via a three-step binding mechanism. Biochemistry, 48, 1801-1809.
-
(2009)
Biochemistry
, vol.48
, pp. 1801-1809
-
-
Delgadillo, R.F.1
Whittington, J.E.2
Parkhurst, L.K.3
Parkhurst, L.J.4
-
21
-
-
0033603388
-
Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complex
-
Parkhurst, K.M., Richards, R.M., Brenowitz, M. and Parkhurst, L.J. (1999) Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complex. J. Mol. Biol., 289, 1327-1341.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1327-1341
-
-
Parkhurst, K.M.1
Richards, R.M.2
Brenowitz, M.3
Parkhurst, L.J.4
-
22
-
-
46849083475
-
TATA-binding protein recognition and bending of a consensus promoter are protein species dependent
-
Whittington, J.E., Delgadillo, R.F., Attebury, T.J., Parkhurst, L.K., Daugherty, M.A. and Parkhurst, L.J. (2008) TATA-binding protein recognition and bending of a consensus promoter are protein species dependent. Biochemistry, 47, 7264-7273.
-
(2008)
Biochemistry
, vol.47
, pp. 7264-7273
-
-
Whittington, J.E.1
Delgadillo, R.F.2
Attebury, T.J.3
Parkhurst, L.K.4
Daugherty, M.A.5
Parkhurst, L.J.6
-
23
-
-
33646168041
-
Stepwise bending of DNA by a single TATA-box binding protein
-
Tolic-Norrelykke, S.F., Rasmussen, M.B., Pavone, F.S., Berg-Sorensen, K. and Oddershede, L.B. (2006) Stepwise bending of DNA by a single TATA-box binding protein. Biophys. J., 90, 3694-3703.
-
(2006)
Biophys. J.
, vol.90
, pp. 3694-3703
-
-
Tolic-Norrelykke, S.F.1
Rasmussen, M.B.2
Pavone, F.S.3
Berg-Sorensen, K.4
Oddershede, L.B.5
-
25
-
-
36849060317
-
NC2 mobilizes TBP on core promoter TATA boxes
-
Schluesche, P., Stelzer, G., Piaia, E., Lamb, D.C. and Meisterernst, M. (2007) NC2 mobilizes TBP on core promoter TATA boxes. Nat. Struct. Mol. Biol., 14, 1196-1201.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 1196-1201
-
-
Schluesche, P.1
Stelzer, G.2
Piaia, E.3
Lamb, D.C.4
Meisterernst, M.5
-
26
-
-
84903132860
-
Single-molecule fluorescence resonance energy transfer shows uniformity in TATA binding protein-induced DNA bending and heterogeneity in bending kinetics
-
Blair, R.H., Goodrich, J.A. and Kugel, J.F. (2012) Single-molecule fluorescence resonance energy transfer shows uniformity in TATA binding protein-induced DNA bending and heterogeneity in bending kinetics. Biochemistry, 977, 203-215.
-
(2012)
Biochemistry
, vol.977
, pp. 203-215
-
-
Blair, R.H.1
Goodrich, J.A.2
Kugel, J.F.3
-
27
-
-
79551488258
-
FRET (fluorescence resonance energy transfer) sheds light on transcription
-
Grohmann, D., Klose, D., Fielden, D. and Werner, F. (2011) FRET (fluorescence resonance energy transfer) sheds light on transcription. Biochem. Soc. Trans., 39, 122-127.
-
(2011)
Biochem. Soc. Trans.
, vol.39
, pp. 122-127
-
-
Grohmann, D.1
Klose, D.2
Fielden, D.3
Werner, F.4
-
28
-
-
84856781205
-
Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF
-
Fishburn, J. and Hahn, S. (2012) Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF. Mol. Cell. Biol., 32, 12-25.
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 12-25
-
-
Fishburn, J.1
Hahn, S.2
-
29
-
-
0028230983
-
RNA polymerase II cofactor PC2 facilitates activation of transcription by GAL4-AH in vitro
-
Kretzschmar, M., Stelzer, G., Roeder, R.G. and Meisterernst, M. (1994) RNA polymerase II cofactor PC2 facilitates activation of transcription by GAL4-AH in vitro. Mol. Cell. Biol., 14, 3927-3937.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 3927-3937
-
-
Kretzschmar, M.1
Stelzer, G.2
Roeder, R.G.3
Meisterernst, M.4
-
30
-
-
24344504002
-
Direct modulation of RNA polymerase core functions by basal transcription factors
-
Werner, F. and Weinzierl, R.O. (2005) Direct modulation of RNA polymerase core functions by basal transcription factors. Mol. Cell. Biol., 25, 8344-8355.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 8344-8355
-
-
Werner, F.1
Weinzierl, R.O.2
-
31
-
-
14044266960
-
Efficient binding of NC2.TATA-binding protein to DNA in the absence of TATA
-
Gilfillan, S., Stelzer, G., Piaia, E., Hofmann, M.G. and Meisterernst, M. (2005) Efficient binding of NC2.TATA-binding protein to DNA in the absence of TATA. J. Biol. Chem., 280, 6222-6230.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 6222-6230
-
-
Gilfillan, S.1
Stelzer, G.2
Piaia, E.3
Hofmann, M.G.4
Meisterernst, M.5
-
32
-
-
0034724913
-
The role of transcription factor B in transcription initiation and promoter clearance in the archaeon Sulfolobus acidocaldarius
-
Bell, S.D. and Jackson, S.P. (2000) The role of transcription factor B in transcription initiation and promoter clearance in the archaeon Sulfolobus acidocaldarius. J. Biol. Chem, 275, 12934-12940.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 12934-12940
-
-
Bell, S.D.1
Jackson, S.P.2
-
33
-
-
43249098833
-
Dynamics of TBP binding to the TATA box
-
Schluesche, P., Heiss, G., Meisterernst, M. and Lamb, D.C. (2008) Dynamics of TBP binding to the TATA box. Proc. SPIE, 6862, 68620E.
-
(2008)
Proc. SPIE
, vol.6862
-
-
Schluesche, P.1
Heiss, G.2
Meisterernst, M.3
Lamb, D.C.4
-
34
-
-
44449134820
-
A practical guide to single-molecule FRET
-
Roy, R., Hohng, S. and Ha, T. (2008) A practical guide to single-molecule FRET. Nat. Methods, 5, 507-516.
-
(2008)
Nat. Methods
, vol.5
, pp. 507-516
-
-
Roy, R.1
Hohng, S.2
Ha, T.3
-
35
-
-
84864919485
-
DNA origami as biocompatible surface to match single-molecule and ensemble experiments
-
Gietl, A., Holzmeister, P., Grohmann, D. and Tinnefeld, P. (2012) DNA origami as biocompatible surface to match single-molecule and ensemble experiments. Nucleic Acids Res., 40, e110.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Gietl, A.1
Holzmeister, P.2
Grohmann, D.3
Tinnefeld, P.4
-
36
-
-
2942650138
-
Fluorescence-aided molecule sorting: Analysis of structure and interactions by alternating-laser excitation of single molecules
-
Kapanidis, A.N., Lee, N.K., Laurence, T.A., Doose, S., Margeat, E. and Weiss, S. (2004) Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules. Proc. Natl. Acad. Sci. U.S.A., 101, 8936-8941.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 8936-8941
-
-
Kapanidis, A.N.1
Lee, N.K.2
Laurence, T.A.3
Doose, S.4
Margeat, E.5
Weiss, S.6
-
37
-
-
27744519499
-
Pulsed interleaved excitation
-
Muller, B.K., Zaychikov, E., Brauchle, C. and Lamb, D.C. (2005) Pulsed interleaved excitation. Biophys. J., 89, 3508-3522.
-
(2005)
Biophys. J.
, vol.89
, pp. 3508-3522
-
-
Muller, B.K.1
Zaychikov, E.2
Brauchle, C.3
Lamb, D.C.4
-
38
-
-
33751349660
-
Shot-noise limited single-molecule FRET histograms: Comparison between theory and experiments
-
Nir, E., Michalet, X., Hamadani, K.M., Laurence, T.A., Neuhauser, D., Kovchegov, Y. and Weiss, S. (2006) Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments. J. Phys. Chem. B., 110, 22103-22124.
-
(2006)
J. Phys. Chem. B.
, vol.110
, pp. 22103-22124
-
-
Nir, E.1
Michalet, X.2
Hamadani, K.M.3
Laurence, T.A.4
Neuhauser, D.5
Kovchegov, Y.6
Weiss, S.7
-
39
-
-
84858048722
-
Disentangling subpopulations in single-molecule FRET and ALEX experiments with photon distribution analysis
-
Tomov, T.E., Tsukanov, R., Masoud, R., Liber, M., Plavner, N. and Nir, E. (2012) Disentangling subpopulations in single-molecule FRET and ALEX experiments with photon distribution analysis. Biophys. J., 102, 1163-1173.
-
(2012)
Biophys. J.
, vol.102
, pp. 1163-1173
-
-
Tomov, T.E.1
Tsukanov, R.2
Masoud, R.3
Liber, M.4
Plavner, N.5
Nir, E.6
-
40
-
-
0027534777
-
Metabolic pathways in methanococcus jannaschii and other methanogenic bacteria
-
Sprott, G.D., Ekiel, I. and Patel, G.B. (1993) Metabolic Pathways in Methanococcus jannaschii and Other Methanogenic Bacteria. Appl. Environ. Microbiol., 59, 1092-1098.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 1092-1098
-
-
Sprott, G.D.1
Ekiel, I.2
Patel, G.B.3
-
41
-
-
61449216130
-
In vivo measurement of cytosolic and mitochondrial pH using a pH-sensitive GFP derivative in Saccharomyces cerevisiae reveals a relation between intracellular pH and growth
-
Orij, R., Postmus, J., Ter Beek, A., Brul, S. and Smits, G.J. (2009) In vivo measurement of cytosolic and mitochondrial pH using a pH-sensitive GFP derivative in Saccharomyces cerevisiae reveals a relation between intracellular pH and growth. Microbiology, 155, 268-278.
-
(2009)
Microbiology
, vol.155
, pp. 268-278
-
-
Orij, R.1
Postmus, J.2
Ter Beek, A.3
Brul, S.4
Smits, G.J.5
-
42
-
-
0000720562
-
Chemiosmotic H+ cycling across the plasma membrane of the thermoacidophilic archaebacterium Sulfolobus acidocaldarius
-
Moll, R.S.G. (1988) Chemiosmotic H+ cycling across the plasma membrane of the thermoacidophilic archaebacterium Sulfolobus acidocaldarius. FEBS Lett., 232, 359-363.
-
(1988)
FEBS Lett.
, vol.232
, pp. 359-363
-
-
Moll, R.S.G.1
-
43
-
-
0032947577
-
Osmoadaptation in archaea
-
Martin, D.D., Ciulla, R.A. and Roberts, M.F. (1999) Osmoadaptation in archaea. Appl. Environ. Microbiol., 65, 1815-1825.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1815-1825
-
-
Martin, D.D.1
Ciulla, R.A.2
Roberts, M.F.3
-
44
-
-
0029166109
-
Regulation of cation transport in Saccharomyces cerevisiae by the salt tolerance gene HAL3
-
Ferrando, A., Kron, S.J., Rios, G., Fink, G.R. and Serrano, R. (1995) Regulation of cation transport in Saccharomyces cerevisiae by the salt tolerance gene HAL3. Mol. Cell. Biol., 15, 5470-5481.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 5470-5481
-
-
Ferrando, A.1
Kron, S.J.2
Rios, G.3
Fink, G.R.4
Serrano, R.5
-
45
-
-
0029008807
-
Yeast TATA binding protein interaction with DNA: Fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics
-
Perez-Howard, G.M., Weil, P.A. and Beechem, J.M. (1995) Yeast TATA binding protein interaction with DNA: fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics. Biochemistry, 34, 8005-8017.
-
(1995)
Biochemistry
, vol.34
, pp. 8005-8017
-
-
Perez-Howard, G.M.1
Weil, P.A.2
Beechem, J.M.3
-
46
-
-
0035839638
-
Marked stepwise differences within a common kinetic mechanism characterize TATA-binding protein interactions with two consensus promoters
-
Powell, R.M., Parkhurst, K.M., Brenowitz, M. and Parkhurst, L.J. (2001) Marked stepwise differences within a common kinetic mechanism characterize TATA-binding protein interactions with two consensus promoters. J. Biol. Chem., 276, 29782-29791.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 29782-29791
-
-
Powell, R.M.1
Parkhurst, K.M.2
Brenowitz, M.3
Parkhurst, L.J.4
-
47
-
-
0035805572
-
DNA sequence-dependent differences in TATA-binding protein-induced DNA bending in solution are highly sensitive to osmolytes
-
Wu, J., Parkhurst, K.M., Powell, R.M. and Parkhurst, L.J. (2001) DNA sequence-dependent differences in TATA-binding protein-induced DNA bending in solution are highly sensitive to osmolytes. J. Biol. Chem., 276, 14623-14627.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 14623-14627
-
-
Wu, J.1
Parkhurst, K.M.2
Powell, R.M.3
Parkhurst, L.J.4
-
48
-
-
0035794149
-
TATA-flanking sequences influence the rate and stability of TATA-binding protein and TFIIB binding
-
Wolner, B.S. and Gralla, J.D. (2001) TATA-flanking sequences influence the rate and stability of TATA-binding protein and TFIIB binding. J. Biol. Chem., 276, 6260-6266.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 6260-6266
-
-
Wolner, B.S.1
Gralla, J.D.2
-
49
-
-
0030596148
-
The crystal structure of a hyperthermophilic archaeal TATA-box binding protein
-
DeDecker, B.S., O'Brien, R., Fleming, P.J., Geiger, J.H., Jackson, S.P. and Sigler, P.B. (1996) The crystal structure of a hyperthermophilic archaeal TATA-box binding protein. J. Mol. Biol., 264, 1072-1084.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 1072-1084
-
-
Dedecker, B.S.1
O'Brien, R.2
Fleming, P.J.3
Geiger, J.H.4
Jackson, S.P.5
Sigler, P.B.6
-
50
-
-
0034745386
-
The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition
-
Bell, S.D., Brinkman, A.B., van der Oost, J. and Jackson, S.P. (2001) The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition. EMBO Rep., 2, 133-138.
-
(2001)
EMBO Rep.
, vol.2
, pp. 133-138
-
-
Bell, S.D.1
Brinkman, A.B.2
Van Der-Oost, J.3
Jackson, S.P.4
-
51
-
-
0033508032
-
A subunit of yeast TFIIIC participates in the recruitment of TATA-binding protein
-
Deprez, E., Arrebola, R., Conesa, C. and Sentenac, A. (1999) A subunit of yeast TFIIIC participates in the recruitment of TATA-binding protein. Mol. Cell. Biol., 19, 8042-8051.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 8042-8051
-
-
Deprez, E.1
Arrebola, R.2
Conesa, C.3
Sentenac, A.4
-
52
-
-
0029912151
-
Alternative outcomes in assembly of promoter complexes: The roles of TBP and a flexible linker in placing TFIIIB on tRNA genes
-
Joazeiro, C.A., Kassavetis, G.A. and Geiduschek, E.P. (1996) Alternative outcomes in assembly of promoter complexes: the roles of TBP and a flexible linker in placing TFIIIB on tRNA genes. Genes Dev., 10, 725-739.
-
(1996)
Genes Dev.
, vol.10
, pp. 725-739
-
-
Joazeiro, C.A.1
Kassavetis, G.A.2
Geiduschek, E.P.3
-
53
-
-
0026540237
-
Bending of the Saccharomyces cerevisiae 5S rRNA gene in transcription factor complexes
-
Braun, B.R., Kassavetis, G.A. and Geiduschek, E.P. (1992) Bending of the Saccharomyces cerevisiae 5S rRNA gene in transcription factor complexes. J. Biol. Chem., 267, 22562-22569.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 22562-22569
-
-
Braun, B.R.1
Kassavetis, G.A.2
Geiduschek, E.P.3
-
54
-
-
0025896853
-
Saccharomyces cerevisiae transcription factors IIIB and IIIC bend the DNA of a tRNA(Gln) gene
-
Leveillard, T., Kassavetis, G.A. and Geiduschek, E.P. (1991) Saccharomyces cerevisiae transcription factors IIIB and IIIC bend the DNA of a tRNA(Gln) gene. J. Biol. Chem., 266, 5162-5168.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 5162-5168
-
-
Leveillard, T.1
Kassavetis, G.A.2
Geiduschek, E.P.3
-
55
-
-
34548179533
-
TFIIA changes the conformation of the DNA in TBP/TATA complexes and increases their kinetic stability
-
Hieb, A.R., Halsey, W.A., Betterton, M.D., Perkins, T.T., Kugel, J.F. and Goodrich, J.A. (2007) TFIIA changes the conformation of the DNA in TBP/TATA complexes and increases their kinetic stability. J. Mol. Biol., 372, 619-632.
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 619-632
-
-
Hieb, A.R.1
Halsey, W.A.2
Betterton, M.D.3
Perkins, T.T.4
Kugel, J.F.5
Goodrich, J.A.6
-
56
-
-
0035957083
-
Site-specific cation binding mediates TATA binding protein-DNA interaction from a hyperthermophilic archaeon
-
Bergqvist, S., O'Brien, R. and Ladbury, J.E. (2001) Site-specific cation binding mediates TATA binding protein-DNA interaction from a hyperthermophilic archaeon. Biochemistry, 40, 2419-2425.
-
(2001)
Biochemistry
, vol.40
, pp. 2419-2425
-
-
Bergqvist, S.1
O'Brien, R.2
Ladbury, J.E.3
-
57
-
-
0021748004
-
Ammonia/potassium exchange in methanogenic bacteria
-
Sprott, G.D., Shaw, K.M. and Jarrell, K.F. (1984) Ammonia/potassium exchange in methanogenic bacteria. J. Biol. Chem., 259, 12602-12608.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 12602-12608
-
-
Sprott, G.D.1
Shaw, K.M.2
Jarrell, K.F.3
-
58
-
-
0030834850
-
Temperature, stability, and the hydrophobic interaction
-
Schellman, J.A. (1997) Temperature, stability, and the hydrophobic interaction. Biophys. J., 73, 2960-2964.
-
(1997)
Biophys. J.
, vol.73
, pp. 2960-2964
-
-
Schellman, J.A.1
-
59
-
-
0015520434
-
The effects of salts on the free energies of nonpolar groups in model peptides
-
Nandi, P.K. and Robinson, D.R. (1972) The effects of salts on the free energies of nonpolar groups in model peptides. J. Am. Chem. Soc., 94, 1308-1315.
-
(1972)
J. Am. Chem. Soc.
, vol.94
, pp. 1308-1315
-
-
Nandi, P.K.1
Robinson, D.R.2
-
60
-
-
1642436654
-
Origins of protein stability revealed by comparing crystal structures of TATA binding proteins
-
Koike, H., Kawashima-Ohya, Y., Yamasaki, T., Clowney, L., Katsuya, Y. and Suzuki, M. (2004) Origins of protein stability revealed by comparing crystal structures of TATA binding proteins. Structure, 12, 157-168.
-
(2004)
Structure
, vol.12
, pp. 157-168
-
-
Koike, H.1
Kawashima-Ohya, Y.2
Yamasaki, T.3
Clowney, L.4
Katsuya, Y.5
Suzuki, M.6
-
61
-
-
0038303232
-
Activation of archaeal transcription by recruitment of the TATA-binding protein
-
Ouhammouch, M., Dewhurst, R.E., Hausner, W., Thomm, M. and Geiduschek, E.P. (2003) Activation of archaeal transcription by recruitment of the TATA-binding protein. Proc. Natl. Acad. Sci. U.S.A., 100, 5097-5102.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 5097-5102
-
-
Ouhammouch, M.1
Dewhurst, R.E.2
Hausner, W.3
Thomm, M.4
Geiduschek, E.P.5
-
62
-
-
0028038315
-
Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism
-
Auble, D.T., Hansen, K.E., Mueller, C.G., Lane, W.S., Thorner, J. and Hahn, S. (1994) Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism. Genes Dev., 8, 1920-1934.
-
(1994)
Genes Dev.
, vol.8
, pp. 1920-1934
-
-
Auble, D.T.1
Hansen, K.E.2
Mueller, C.G.3
Lane, W.S.4
Thorner, J.5
Hahn, S.6
-
63
-
-
0031883573
-
The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA-binding protein
-
Kokubo, T., Swanson, M.J., Nishikawa, J.I., Hinnebusch, A.G. and Nakatani, Y. (1998) The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA-binding protein. Mol. Cell. Biol., 18, 1003-1012.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 1003-1012
-
-
Kokubo, T.1
Swanson, M.J.2
Nishikawa, J.I.3
Hinnebusch, A.G.4
Nakatani, Y.5
-
64
-
-
0034077514
-
Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors?
-
Baliga, N.S., Goo, Y.A., Ng, W.V., Hood, L., Daniels, C.J. and DasSarma, S. (2000) Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors? Mol. Microbiol., 36, 1184-1185.
-
(2000)
Mol. Microbiol.
, vol.36
, pp. 1184-1185
-
-
Baliga, N.S.1
Goo, Y.A.2
Ng, W.V.3
Hood, L.4
Daniels, C.J.5
Dassarma, S.6
-
65
-
-
34248399625
-
General transcription factor specified global gene regulation in archaea
-
Facciotti, M.T., Reiss, D.J., Pan, M., Kaur, A., Vuthoori, M., Bonneau, R., Shannon, P., Srivastava, A., Donohoe, S.M., Hood, L.E. et al. (2007) General transcription factor specified global gene regulation in archaea. Proc. Natl. Acad. Sci. U.S.A., 104, 4630-4635.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 4630-4635
-
-
Facciotti, M.T.1
Reiss, D.J.2
Pan, M.3
Kaur, A.4
Vuthoori, M.5
Bonneau, R.6
Shannon, P.7
Srivastava, A.8
Donohoe, S.M.9
Hood, L.E.10
-
66
-
-
66949142420
-
The crenarchaeal DNA damage-inducible transcription factor B paralogue TFB3 is a general activator of transcription
-
Paytubi, S. and White, M.F. (2009) The crenarchaeal DNA damage-inducible transcription factor B paralogue TFB3 is a general activator of transcription. Mol. Microbiol., 72, 1487-1499.
-
(2009)
Mol. Microbiol.
, vol.72
, pp. 1487-1499
-
-
Paytubi, S.1
White, M.F.2
-
67
-
-
79952254334
-
General transcription factors and subunits of RNA polymerase III: Paralogs for promoter- and cell type-specific transcription in multicellular eukaryotes
-
Teichmann, M., Dieci, G., Pascali, C. and Boldina, G. (2010) General transcription factors and subunits of RNA polymerase III: paralogs for promoter- and cell type-specific transcription in multicellular eukaryotes. Transcription, 1, 130-135.
-
(2010)
Transcription
, vol.1
, pp. 130-135
-
-
Teichmann, M.1
Dieci, G.2
Pascali, C.3
Boldina, G.4
|