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Volumn 13, Issue 11, 2008, Pages 1127-1140

Crystal structure of Methanococcus jannaschii TATA box-binding protein

Author keywords

[No Author keywords available]

Indexed keywords

DNA; TATA BINDING PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR IIB;

EID: 54449093880     PISSN: 13569597     EISSN: 13652443     Source Type: Journal    
DOI: 10.1111/j.1365-2443.2008.01233.x     Document Type: Article
Times cited : (9)

References (47)
  • 1
    • 21644484800 scopus 로고    scopus 로고
    • Purification, crystallization and preliminary X-ray analysis of Methanococcus jannaschii TATA box-binding protein (TBP)
    • Adachi, N., Natsume, R., Senda, M., Muto, S., Senda, T. & Horikoshi, M. (2004) Purification, crystallization and preliminary X-ray analysis of Methanococcus jannaschii TATA box-binding protein (TBP). Acta Crystallogr. D Biol. Crystallogr. 60, 2328-2331.
    • (2004) Acta Crystallogr. D Biol. Crystallogr. , vol.60 , pp. 2328-2331
    • Adachi, N.1    Natsume, R.2    Senda, M.3    Muto, S.4    Senda, T.5    Horikoshi, M.6
  • 2
    • 0033485460 scopus 로고    scopus 로고
    • DNA-binding proteins and evolution of transcription regulation in the archaea
    • Aravind, L. & Koonin, E.V. (1999) DNA-binding proteins and evolution of transcription regulation in the archaea. Nucleic Acids Res. 27, 4658-4670.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 4658-4670
    • Aravind, L.1    Koonin, E.V.2
  • 4
    • 0032102006 scopus 로고    scopus 로고
    • Transcription and translation in Archaea: A mosaic of eukaryal and bacterial features
    • Bell, S.D. & Jackson, S.P. (1998) Transcription and translation in Archaea: A mosaic of eukaryal and bacterial features. Trends Microbiol. 6, 222-228.
    • (1998) Trends Microbiol. , vol.6 , pp. 222-228
    • Bell, S.D.1    Jackson, S.P.2
  • 5
    • 0035067057 scopus 로고    scopus 로고
    • Mechanism and regulation of transcription in archaea
    • Bell, S.D. & Jackson, S.P. (2001) Mechanism and regulation of transcription in archaea. Curr. Opin. Microbiol. 4, 208-213.
    • (2001) Curr. Opin. Microbiol. , vol.4 , pp. 208-213
    • Bell, S.D.1    Jackson, S.P.2
  • 6
    • 0034745386 scopus 로고    scopus 로고
    • The archaeal TFIIEα homologue facilitates transcription initiation by enhancing TATA-box recognition
    • Bell, S.D., Brinkman, A.B., van der Oost, J. & Jackson, S.P. (2001) The archaeal TFIIEα homologue facilitates transcription initiation by enhancing TATA-box recognition. EMBO Rep. 2, 133-138.
    • (2001) EMBO Rep. , vol.2 , pp. 133-138
    • Bell, S.D.1    Brinkman, A.B.2    van der Oost, J.3    Jackson, S.P.4
  • 8
    • 1142274214 scopus 로고    scopus 로고
    • Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms
    • Bushnell, D.A., Westover, K.D., Davis, R.E. & Kornberg, R.D. (2004) Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms. Science 303, 983-988.
    • (2004) Science , vol.303 , pp. 983-988
    • Bushnell, D.A.1    Westover, K.D.2    Davis, R.E.3    Kornberg, R.D.4
  • 9
    • 0027250617 scopus 로고
    • Crystal structure of yeast TATA-binding protein and model for interaction with DNA
    • Chasman, D.I., Flaherty, K.M., Sharp, P.A. & Kornberg, R.D. (1993) Crystal structure of yeast TATA-binding protein and model for interaction with DNA. Proc. Natl. Acad. Sci. USA 90, 8174-8178.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 8174-8178
    • Chasman, D.I.1    Flaherty, K.M.2    Sharp, P.A.3    Kornberg, R.D.4
  • 10
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project No. 4
    • Collaborative Computational Project No. 4. (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50, 760-763.
    • (1994) Acta Crystallogr. D Biol. Crystallogr. , vol.50 , pp. 760-763
  • 13
    • 0028933771 scopus 로고
    • Life in unusual environments: Progress in understanding the structure and function of enzymes from extreme halophilic bacteria
    • Eisenberg, H. (1995) Life in unusual environments: Progress in understanding the structure and function of enzymes from extreme halophilic bacteria. Arch. Biochem. Biophys. 318, 1-5.
    • (1995) Arch. Biochem. Biophys. , vol.318 , pp. 1-5
    • Eisenberg, H.1
  • 14
    • 20344386725 scopus 로고    scopus 로고
    • Archaeal transcription and its regulators
    • Geiduschek, E.P. & Ouhammouch, M. (2005) Archaeal transcription and its regulators. Mol. Microbiol. 56, 1397-1407.
    • (2005) Mol. Microbiol. , vol.56 , pp. 1397-1407
    • Geiduschek, E.P.1    Ouhammouch, M.2
  • 15
    • 0347890376 scopus 로고
    • Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences
    • Hahn, S., Buratowski, S., Sharp, P.A. & Guarente, L. (1989) Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences. Proc. Natl. Acad. Sci. USA 86, 5718-5722.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 5718-5722
    • Hahn, S.1    Buratowski, S.2    Sharp, P.A.3    Guarente, L.4
  • 16
    • 0035116309 scopus 로고    scopus 로고
    • TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEalpha
    • Hanzelka, B.L., Darcy, T.J. & Reeve, J.N. (2001) TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEalpha. J. Bacteriol. 183, 1813-1818.
    • (2001) J. Bacteriol. , vol.183 , pp. 1813-1818
    • Hanzelka, B.L.1    Darcy, T.J.2    Reeve, J.N.3
  • 17
    • 0027483012 scopus 로고
    • Co-crystal structure of TBP recognizing the minor groove of a TATA element
    • Kim, J.L., Nikolov, D.B. & Burley, S.K. (1993a) Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365, 520-527.
    • (1993) Nature , vol.365 , pp. 520-527
    • Kim, J.L.1    Nikolov, D.B.2    Burley, S.K.3
  • 18
    • 0027504913 scopus 로고
    • Crystal structure of a yeast TBP/TATA-box complex
    • Kim, Y., Geiger, J.H., Hahn, S. & Sigler, P.B. (1993b) Crystal structure of a yeast TBP/TATA-box complex. Nature 365, 512-520.
    • (1993) Nature , vol.365 , pp. 512-520
    • Kim, Y.1    Geiger, J.H.2    Hahn, S.3    Sigler, P.B.4
  • 19
    • 1642436654 scopus 로고    scopus 로고
    • Origins of protein stability revealed by comparing crystal structures of TATA binding proteins
    • Koike, H., Kawashima-Ohya, Y., Yamasaki, T., Clowney, L., Katsuya, Y. & Suzuki, M. (2004) Origins of protein stability revealed by comparing crystal structures of TATA binding proteins. Structure 12, 157-168.
    • (2004) Structure , vol.12 , pp. 157-168
    • Koike, H.1    Kawashima-Ohya, Y.2    Yamasaki, T.3    Clowney, L.4    Katsuya, Y.5    Suzuki, M.6
  • 20
    • 34548801789 scopus 로고    scopus 로고
    • The molecular basis of eukaryotic transcription
    • Kornberg, R.D. (2007) The molecular basis of eukaryotic transcription. Proc. Natl. Acad. Sci. USA 104, 12955-12961.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 12955-12961
    • Kornberg, R.D.1
  • 21
    • 0031562901 scopus 로고    scopus 로고
    • The 2.1-Åcrystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box
    • Kosa, P.F., Ghosh, G., DeDecker, B.S. & Sigler, P.B. (1997) The 2.1-Åcrystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box. Proc. Natl. Acad. Sci. USA 94, 6042-6047.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6042-6047
    • Kosa, P.F.1    Ghosh, G.2    DeDecker, B.S.3    Sigler, P.B.4
  • 23
    • 0027169515 scopus 로고
    • Main-chain bond lengths and bond angles in protein structures
    • Laskowski, R.A., Moss, D.S. & Thornton, J.M. (1993) Main-chain bond lengths and bond angles in protein structures. J. Mol. Biol. 231, 1049-1067.
    • (1993) J. Mol. Biol. , vol.231 , pp. 1049-1067
    • Laskowski, R.A.1    Moss, D.S.2    Thornton, J.M.3
  • 25
    • 33847070442 scopus 로고    scopus 로고
    • The role of chromatin during transcription
    • Li, B., Carey, M. & Workman, J.L. (2007) The role of chromatin during transcription. Cell 128, 707-719.
    • (2007) Cell , vol.128 , pp. 707-719
    • Li, B.1    Carey, M.2    Workman, J.L.3
  • 26
    • 23444439791 scopus 로고
    • RNA polymerase II initiation factor interactions and transcription start site selection
    • Li, Y., Flanagan, P.M., Tschochner, H. & Kornberg, R.D. (1994) RNA polymerase II initiation factor interactions and transcription start site selection. Science 263, 805-807.
    • (1994) Science , vol.263 , pp. 805-807
    • Li, Y.1    Flanagan, P.M.2    Tschochner, H.3    Kornberg, R.D.4
  • 27
    • 0033598826 scopus 로고    scopus 로고
    • The structural basis for the oriented assembly of a TBP/TFB/promoter complex
    • Littlefield, O., Korkhin, Y. & Sigler, P.B. (1999) The structural basis for the oriented assembly of a TBP/TFB/promoter complex. Proc. Natl. Acad. Sci. USA 96, 13668-13673.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 13668-13673
    • Littlefield, O.1    Korkhin, Y.2    Sigler, P.B.3
  • 28
    • 0027316149 scopus 로고
    • The p53 activation domain binds the TATA box-binding polypeptide in Holo-TFIID, and a neighboring p53 domain inhibits transcription
    • Liu, X., Miller, C.W., Koeffler, P.H. & Berk, A.J. (1993) The p53 activation domain binds the TATA box-binding polypeptide in Holo-TFIID, and a neighboring p53 domain inhibits transcription. Mol. Cell. Biol. 13, 3291-3300.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 3291-3300
    • Liu, X.1    Miller, C.W.2    Koeffler, P.H.3    Berk, A.J.4
  • 29
    • 0028176170 scopus 로고
    • Transcription factor IID in the Archaea: Sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes
    • Marsh, T.L., Reich, C.I., Whitelock, R.B. & Olsen, G.J. (1994) Transcription factor IID in the Archaea: Sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes. Proc. Natl. Acad. Sci. USA 91, 4180-4184.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 4180-4184
    • Marsh, T.L.1    Reich, C.I.2    Whitelock, R.B.3    Olsen, G.J.4
  • 31
    • 0030954497 scopus 로고    scopus 로고
    • Elucidation of the basic three-dimensional structure of type I interferons and its functional and evolutionary implications
    • Mitsui, Y. & Senda, T. (1997) Elucidation of the basic three-dimensional structure of type I interferons and its functional and evolutionary implications. J. Interferon Cytokine Res. 17, 319-326.
    • (1997) J. Interferon Cytokine Res. , vol.17 , pp. 319-326
    • Mitsui, Y.1    Senda, T.2
  • 32
    • 0027514171 scopus 로고
    • Molecular mimicry and the generation of host defense protein diversity
    • Murphy, P.M. (1993) Molecular mimicry and the generation of host defense protein diversity. Cell 72, 823-826.
    • (1993) Cell , vol.72 , pp. 823-826
    • Murphy, P.M.1
  • 33
    • 0030924992 scopus 로고    scopus 로고
    • Refinement of macromolecular structures by the maximum-likelihood method
    • Murshudov, G.N., Vagin, A.A. & Dodson, E.J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53, 240-255.
    • (1997) D Biol. Crystallogr. , vol.53 , pp. 240-255
    • Murshudov, G.N.1    Vagin, A.A.2    Dodson, E.J.3
  • 36
    • 0032577337 scopus 로고    scopus 로고
    • The effects of salt on the TATA binding protein-DNA interaction from a hyperthermophilic archaeon
    • O'Brien, R., DeDecker, B., Fleming, K.G., Sigler, P.B. & Ladbury, J.E. (1998) The effects of salt on the TATA binding protein-DNA interaction from a hyperthermophilic archaeon. J. Mol. Biol. 279, 117-125.
    • (1998) J. Mol. Biol. , vol.279 , pp. 117-125
    • O'Brien, R.1    DeDecker, B.2    Fleming, K.G.3    Sigler, P.B.4    Ladbury, J.E.5
  • 37
    • 27344457589 scopus 로고    scopus 로고
    • An expanding family of archaeal transcriptional activators
    • Ouhammouch, M. & Geiduschek, E.P. (2005) An expanding family of archaeal transcriptional activators. Proc. Natl. Acad. Sci. USA 102, 15423-15428.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 15423-15428
    • Ouhammouch, M.1    Geiduschek, E.P.2
  • 39
    • 0026754364 scopus 로고
    • TFIIB, an evolutionary link between the transcription machineries of archaebacteria and eukaryotes
    • Ouzounis, C. & Sander, C. (1992) TFIIB, an evolutionary link between the transcription machineries of archaebacteria and eukaryotes. Cell 71, 189-190.
    • (1992) Cell , vol.71 , pp. 189-190
    • Ouzounis, C.1    Sander, C.2
  • 40
    • 0038575389 scopus 로고    scopus 로고
    • Archaeal chromatin and transcription
    • Reeve, J.N. (2003) Archaeal chromatin and transcription. Mol. Microbiol. 48, 587-598.
    • (2003) Mol. Microbiol. , vol.48 , pp. 587-598
    • Reeve, J.N.1
  • 41
    • 0030249381 scopus 로고    scopus 로고
    • The role of general initiation factors in transcription by RNA polymerase II
    • Roeder, R.G. (1996) The role of general initiation factors in transcription by RNA polymerase II. Trends Biochem. Sci. 21, 327-335.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 327-335
    • Roeder, R.G.1
  • 42
    • 0028361219 scopus 로고
    • The TATA-binding protein: A general transcription factor in eukaryotes and archaebacteria
    • Rowlands, T., Baumann, P. & Jackson, S.P. (1994) The TATA-binding protein: A general transcription factor in eukaryotes and archaebacteria. Science 264, 1326-1329.
    • (1994) Science , vol.264 , pp. 1326-1329
    • Rowlands, T.1    Baumann, P.2    Jackson, S.P.3
  • 43
    • 0029887361 scopus 로고    scopus 로고
    • Archaeal transcription factors and their role in transcription initiation
    • Thomm, M. (1996) Archaeal transcription factors and their role in transcription initiation. FEMS Microbiol. Rev. 18, 159-171.
    • (1996) FEMS Microbiol. Rev. , vol.18 , pp. 159-171
    • Thomm, M.1
  • 44
    • 0034517589 scopus 로고    scopus 로고
    • An approach to multi-copy search in molecular replacement
    • Vagin, A. & Teplyakov, A. (2000) An approach to multi-copy search in molecular replacement. Acta Crystallogr. D Biol. Crystallogr. 56, 1622-1624.
    • (2000) Acta Crystallogr. D Biol. Crystallogr. , vol.56 , pp. 1622-1624
    • Vagin, A.1    Teplyakov, A.2
  • 45
    • 0036753399 scopus 로고    scopus 로고
    • A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription
    • Werner, F. & Weinzierl, R.O. (2002) A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription. Mol. Cell 10, 635-646.
    • (2002) Mol. Cell , vol.10 , pp. 635-646
    • Werner, F.1    Weinzierl, R.O.2
  • 46
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese, C.R., Kandler, O. & Wheelis, M.L. (1990) Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 87, 4576-4579.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 47
    • 0018164748 scopus 로고
    • DNA-dependent RNA polymerase from Halobacterium halobium
    • Zillig, W., Stetter, K.O. & Tobien, M. (1978) DNA-dependent RNA polymerase from Halobacterium halobium. Eur. J. Biochem. 91, 193-199.
    • (1978) Eur. J. Biochem. , vol.91 , pp. 193-199
    • Zillig, W.1    Stetter, K.O.2    Tobien, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.