-
1
-
-
21644484800
-
Purification, crystallization and preliminary X-ray analysis of Methanococcus jannaschii TATA box-binding protein (TBP)
-
Adachi, N., Natsume, R., Senda, M., Muto, S., Senda, T. & Horikoshi, M. (2004) Purification, crystallization and preliminary X-ray analysis of Methanococcus jannaschii TATA box-binding protein (TBP). Acta Crystallogr. D Biol. Crystallogr. 60, 2328-2331.
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 2328-2331
-
-
Adachi, N.1
Natsume, R.2
Senda, M.3
Muto, S.4
Senda, T.5
Horikoshi, M.6
-
2
-
-
0033485460
-
DNA-binding proteins and evolution of transcription regulation in the archaea
-
Aravind, L. & Koonin, E.V. (1999) DNA-binding proteins and evolution of transcription regulation in the archaea. Nucleic Acids Res. 27, 4658-4670.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4658-4670
-
-
Aravind, L.1
Koonin, E.V.2
-
4
-
-
0032102006
-
Transcription and translation in Archaea: A mosaic of eukaryal and bacterial features
-
Bell, S.D. & Jackson, S.P. (1998) Transcription and translation in Archaea: A mosaic of eukaryal and bacterial features. Trends Microbiol. 6, 222-228.
-
(1998)
Trends Microbiol.
, vol.6
, pp. 222-228
-
-
Bell, S.D.1
Jackson, S.P.2
-
5
-
-
0035067057
-
Mechanism and regulation of transcription in archaea
-
Bell, S.D. & Jackson, S.P. (2001) Mechanism and regulation of transcription in archaea. Curr. Opin. Microbiol. 4, 208-213.
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 208-213
-
-
Bell, S.D.1
Jackson, S.P.2
-
6
-
-
0034745386
-
The archaeal TFIIEα homologue facilitates transcription initiation by enhancing TATA-box recognition
-
Bell, S.D., Brinkman, A.B., van der Oost, J. & Jackson, S.P. (2001) The archaeal TFIIEα homologue facilitates transcription initiation by enhancing TATA-box recognition. EMBO Rep. 2, 133-138.
-
(2001)
EMBO Rep.
, vol.2
, pp. 133-138
-
-
Bell, S.D.1
Brinkman, A.B.2
van der Oost, J.3
Jackson, S.P.4
-
7
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.S., Kuszewski, J., Nilges, M., Pannu, N.S., Read, R.J., Rice, L.M., Simonson, T. & Warren, G.L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54, 905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
8
-
-
1142274214
-
Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms
-
Bushnell, D.A., Westover, K.D., Davis, R.E. & Kornberg, R.D. (2004) Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms. Science 303, 983-988.
-
(2004)
Science
, vol.303
, pp. 983-988
-
-
Bushnell, D.A.1
Westover, K.D.2
Davis, R.E.3
Kornberg, R.D.4
-
9
-
-
0027250617
-
Crystal structure of yeast TATA-binding protein and model for interaction with DNA
-
Chasman, D.I., Flaherty, K.M., Sharp, P.A. & Kornberg, R.D. (1993) Crystal structure of yeast TATA-binding protein and model for interaction with DNA. Proc. Natl. Acad. Sci. USA 90, 8174-8178.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8174-8178
-
-
Chasman, D.I.1
Flaherty, K.M.2
Sharp, P.A.3
Kornberg, R.D.4
-
10
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project No. 4
-
Collaborative Computational Project No. 4. (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50, 760-763.
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
11
-
-
0030596148
-
The crystal structure of a hyperthermophilic archaeal TATA-box binding protein
-
DeDecker, B.S., O'Brien, R., Fleming, P.J., Geiger, J.H., Jackson, S.P. & Sigler, P.B. (1996) The crystal structure of a hyperthermophilic archaeal TATA-box binding protein. J. Mol. Biol. 264, 1072-1084.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 1072-1084
-
-
DeDecker, B.S.1
O'Brien, R.2
Fleming, P.J.3
Geiger, J.H.4
Jackson, S.P.5
Sigler, P.B.6
-
13
-
-
0028933771
-
Life in unusual environments: Progress in understanding the structure and function of enzymes from extreme halophilic bacteria
-
Eisenberg, H. (1995) Life in unusual environments: Progress in understanding the structure and function of enzymes from extreme halophilic bacteria. Arch. Biochem. Biophys. 318, 1-5.
-
(1995)
Arch. Biochem. Biophys.
, vol.318
, pp. 1-5
-
-
Eisenberg, H.1
-
14
-
-
20344386725
-
Archaeal transcription and its regulators
-
Geiduschek, E.P. & Ouhammouch, M. (2005) Archaeal transcription and its regulators. Mol. Microbiol. 56, 1397-1407.
-
(2005)
Mol. Microbiol.
, vol.56
, pp. 1397-1407
-
-
Geiduschek, E.P.1
Ouhammouch, M.2
-
15
-
-
0347890376
-
Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences
-
Hahn, S., Buratowski, S., Sharp, P.A. & Guarente, L. (1989) Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences. Proc. Natl. Acad. Sci. USA 86, 5718-5722.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 5718-5722
-
-
Hahn, S.1
Buratowski, S.2
Sharp, P.A.3
Guarente, L.4
-
16
-
-
0035116309
-
TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEalpha
-
Hanzelka, B.L., Darcy, T.J. & Reeve, J.N. (2001) TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEalpha. J. Bacteriol. 183, 1813-1818.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 1813-1818
-
-
Hanzelka, B.L.1
Darcy, T.J.2
Reeve, J.N.3
-
17
-
-
0027483012
-
Co-crystal structure of TBP recognizing the minor groove of a TATA element
-
Kim, J.L., Nikolov, D.B. & Burley, S.K. (1993a) Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365, 520-527.
-
(1993)
Nature
, vol.365
, pp. 520-527
-
-
Kim, J.L.1
Nikolov, D.B.2
Burley, S.K.3
-
18
-
-
0027504913
-
Crystal structure of a yeast TBP/TATA-box complex
-
Kim, Y., Geiger, J.H., Hahn, S. & Sigler, P.B. (1993b) Crystal structure of a yeast TBP/TATA-box complex. Nature 365, 512-520.
-
(1993)
Nature
, vol.365
, pp. 512-520
-
-
Kim, Y.1
Geiger, J.H.2
Hahn, S.3
Sigler, P.B.4
-
19
-
-
1642436654
-
Origins of protein stability revealed by comparing crystal structures of TATA binding proteins
-
Koike, H., Kawashima-Ohya, Y., Yamasaki, T., Clowney, L., Katsuya, Y. & Suzuki, M. (2004) Origins of protein stability revealed by comparing crystal structures of TATA binding proteins. Structure 12, 157-168.
-
(2004)
Structure
, vol.12
, pp. 157-168
-
-
Koike, H.1
Kawashima-Ohya, Y.2
Yamasaki, T.3
Clowney, L.4
Katsuya, Y.5
Suzuki, M.6
-
20
-
-
34548801789
-
The molecular basis of eukaryotic transcription
-
Kornberg, R.D. (2007) The molecular basis of eukaryotic transcription. Proc. Natl. Acad. Sci. USA 104, 12955-12961.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 12955-12961
-
-
Kornberg, R.D.1
-
21
-
-
0031562901
-
The 2.1-Åcrystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box
-
Kosa, P.F., Ghosh, G., DeDecker, B.S. & Sigler, P.B. (1997) The 2.1-Åcrystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box. Proc. Natl. Acad. Sci. USA 94, 6042-6047.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6042-6047
-
-
Kosa, P.F.1
Ghosh, G.2
DeDecker, B.S.3
Sigler, P.B.4
-
23
-
-
0027169515
-
Main-chain bond lengths and bond angles in protein structures
-
Laskowski, R.A., Moss, D.S. & Thornton, J.M. (1993) Main-chain bond lengths and bond angles in protein structures. J. Mol. Biol. 231, 1049-1067.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 1049-1067
-
-
Laskowski, R.A.1
Moss, D.S.2
Thornton, J.M.3
-
24
-
-
1842614380
-
Mapping key functional sites within yeast TFIID
-
Leurent, C., Sanders, S.L., Demeny, M.A., Garbett, K.A., Ruhlmann, C., Weil, P.A., Tora, L. & Schultz, P. (2004) Mapping key functional sites within yeast TFIID. EMBO J. 23, 719-727.
-
(2004)
EMBO J.
, vol.23
, pp. 719-727
-
-
Leurent, C.1
Sanders, S.L.2
Demeny, M.A.3
Garbett, K.A.4
Ruhlmann, C.5
Weil, P.A.6
Tora, L.7
Schultz, P.8
-
25
-
-
33847070442
-
The role of chromatin during transcription
-
Li, B., Carey, M. & Workman, J.L. (2007) The role of chromatin during transcription. Cell 128, 707-719.
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
26
-
-
23444439791
-
RNA polymerase II initiation factor interactions and transcription start site selection
-
Li, Y., Flanagan, P.M., Tschochner, H. & Kornberg, R.D. (1994) RNA polymerase II initiation factor interactions and transcription start site selection. Science 263, 805-807.
-
(1994)
Science
, vol.263
, pp. 805-807
-
-
Li, Y.1
Flanagan, P.M.2
Tschochner, H.3
Kornberg, R.D.4
-
27
-
-
0033598826
-
The structural basis for the oriented assembly of a TBP/TFB/promoter complex
-
Littlefield, O., Korkhin, Y. & Sigler, P.B. (1999) The structural basis for the oriented assembly of a TBP/TFB/promoter complex. Proc. Natl. Acad. Sci. USA 96, 13668-13673.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 13668-13673
-
-
Littlefield, O.1
Korkhin, Y.2
Sigler, P.B.3
-
28
-
-
0027316149
-
The p53 activation domain binds the TATA box-binding polypeptide in Holo-TFIID, and a neighboring p53 domain inhibits transcription
-
Liu, X., Miller, C.W., Koeffler, P.H. & Berk, A.J. (1993) The p53 activation domain binds the TATA box-binding polypeptide in Holo-TFIID, and a neighboring p53 domain inhibits transcription. Mol. Cell. Biol. 13, 3291-3300.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 3291-3300
-
-
Liu, X.1
Miller, C.W.2
Koeffler, P.H.3
Berk, A.J.4
-
29
-
-
0028176170
-
Transcription factor IID in the Archaea: Sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes
-
Marsh, T.L., Reich, C.I., Whitelock, R.B. & Olsen, G.J. (1994) Transcription factor IID in the Archaea: Sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes. Proc. Natl. Acad. Sci. USA 91, 4180-4184.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 4180-4184
-
-
Marsh, T.L.1
Reich, C.I.2
Whitelock, R.B.3
Olsen, G.J.4
-
31
-
-
0030954497
-
Elucidation of the basic three-dimensional structure of type I interferons and its functional and evolutionary implications
-
Mitsui, Y. & Senda, T. (1997) Elucidation of the basic three-dimensional structure of type I interferons and its functional and evolutionary implications. J. Interferon Cytokine Res. 17, 319-326.
-
(1997)
J. Interferon Cytokine Res.
, vol.17
, pp. 319-326
-
-
Mitsui, Y.1
Senda, T.2
-
32
-
-
0027514171
-
Molecular mimicry and the generation of host defense protein diversity
-
Murphy, P.M. (1993) Molecular mimicry and the generation of host defense protein diversity. Cell 72, 823-826.
-
(1993)
Cell
, vol.72
, pp. 823-826
-
-
Murphy, P.M.1
-
33
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G.N., Vagin, A.A. & Dodson, E.J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53, 240-255.
-
(1997)
D Biol. Crystallogr.
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
34
-
-
0028978670
-
Crystal structure of a TFIIB-TBP-TATA-element ternary complex
-
Nikolov, D.B., Chen, H., Halay, E.D., Usheva, A.A., Hisatake, K., Lee, D.K., Roeder, R.G. & Burley, S.K. (1995) Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature 377, 119-128.
-
(1995)
Nature
, vol.377
, pp. 119-128
-
-
Nikolov, D.B.1
Chen, H.2
Halay, E.D.3
Usheva, A.A.4
Hisatake, K.5
Lee, D.K.6
Roeder, R.G.7
Burley, S.K.8
-
35
-
-
0026491908
-
Crystal structure of TFIID TATA-box binding protein
-
Nikolov, D.B., Hu, S.H., Lin, J., Gasch, A., Hoffmann, A., Horikoshi, M., Chua, N.H., Roeder, R.G. & Burley, S.K. (1992) Crystal structure of TFIID TATA-box binding protein. Nature 360, 40-46.
-
(1992)
Nature
, vol.360
, pp. 40-46
-
-
Nikolov, D.B.1
Hu, S.H.2
Lin, J.3
Gasch, A.4
Hoffmann, A.5
Horikoshi, M.6
Chua, N.H.7
Roeder, R.G.8
Burley, S.K.9
-
36
-
-
0032577337
-
The effects of salt on the TATA binding protein-DNA interaction from a hyperthermophilic archaeon
-
O'Brien, R., DeDecker, B., Fleming, K.G., Sigler, P.B. & Ladbury, J.E. (1998) The effects of salt on the TATA binding protein-DNA interaction from a hyperthermophilic archaeon. J. Mol. Biol. 279, 117-125.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 117-125
-
-
O'Brien, R.1
DeDecker, B.2
Fleming, K.G.3
Sigler, P.B.4
Ladbury, J.E.5
-
37
-
-
27344457589
-
An expanding family of archaeal transcriptional activators
-
Ouhammouch, M. & Geiduschek, E.P. (2005) An expanding family of archaeal transcriptional activators. Proc. Natl. Acad. Sci. USA 102, 15423-15428.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15423-15428
-
-
Ouhammouch, M.1
Geiduschek, E.P.2
-
38
-
-
0038303232
-
Activation of archaeal transcription by recruitment of the TATA-binding protein
-
Ouhammouch, M., Dewhurst, R.E., Hausner, W., Thomm, M. & Geiduschek, E.P. (2003) Activation of archaeal transcription by recruitment of the TATA-binding protein. Proc. Natl. Acad. Sci. USA 100, 5097-5102.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5097-5102
-
-
Ouhammouch, M.1
Dewhurst, R.E.2
Hausner, W.3
Thomm, M.4
Geiduschek, E.P.5
-
39
-
-
0026754364
-
TFIIB, an evolutionary link between the transcription machineries of archaebacteria and eukaryotes
-
Ouzounis, C. & Sander, C. (1992) TFIIB, an evolutionary link between the transcription machineries of archaebacteria and eukaryotes. Cell 71, 189-190.
-
(1992)
Cell
, vol.71
, pp. 189-190
-
-
Ouzounis, C.1
Sander, C.2
-
40
-
-
0038575389
-
Archaeal chromatin and transcription
-
Reeve, J.N. (2003) Archaeal chromatin and transcription. Mol. Microbiol. 48, 587-598.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 587-598
-
-
Reeve, J.N.1
-
41
-
-
0030249381
-
The role of general initiation factors in transcription by RNA polymerase II
-
Roeder, R.G. (1996) The role of general initiation factors in transcription by RNA polymerase II. Trends Biochem. Sci. 21, 327-335.
-
(1996)
Trends Biochem. Sci.
, vol.21
, pp. 327-335
-
-
Roeder, R.G.1
-
42
-
-
0028361219
-
The TATA-binding protein: A general transcription factor in eukaryotes and archaebacteria
-
Rowlands, T., Baumann, P. & Jackson, S.P. (1994) The TATA-binding protein: A general transcription factor in eukaryotes and archaebacteria. Science 264, 1326-1329.
-
(1994)
Science
, vol.264
, pp. 1326-1329
-
-
Rowlands, T.1
Baumann, P.2
Jackson, S.P.3
-
43
-
-
0029887361
-
Archaeal transcription factors and their role in transcription initiation
-
Thomm, M. (1996) Archaeal transcription factors and their role in transcription initiation. FEMS Microbiol. Rev. 18, 159-171.
-
(1996)
FEMS Microbiol. Rev.
, vol.18
, pp. 159-171
-
-
Thomm, M.1
-
44
-
-
0034517589
-
An approach to multi-copy search in molecular replacement
-
Vagin, A. & Teplyakov, A. (2000) An approach to multi-copy search in molecular replacement. Acta Crystallogr. D Biol. Crystallogr. 56, 1622-1624.
-
(2000)
Acta Crystallogr. D Biol. Crystallogr.
, vol.56
, pp. 1622-1624
-
-
Vagin, A.1
Teplyakov, A.2
-
45
-
-
0036753399
-
A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription
-
Werner, F. & Weinzierl, R.O. (2002) A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription. Mol. Cell 10, 635-646.
-
(2002)
Mol. Cell
, vol.10
, pp. 635-646
-
-
Werner, F.1
Weinzierl, R.O.2
-
46
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese, C.R., Kandler, O. & Wheelis, M.L. (1990) Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 87, 4576-4579.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
47
-
-
0018164748
-
DNA-dependent RNA polymerase from Halobacterium halobium
-
Zillig, W., Stetter, K.O. & Tobien, M. (1978) DNA-dependent RNA polymerase from Halobacterium halobium. Eur. J. Biochem. 91, 193-199.
-
(1978)
Eur. J. Biochem.
, vol.91
, pp. 193-199
-
-
Zillig, W.1
Stetter, K.O.2
Tobien, M.3
|