메뉴 건너뛰기




Volumn 4, Issue , 2014, Pages

Network based analyses of gene expression profile of LCN2 overexpression in esophageal squamous cell carcinoma

Author keywords

[No Author keywords available]

Indexed keywords

ACUTE PHASE PROTEIN; LCN2 PROTEIN, HUMAN; LIPOCALIN; ONCOPROTEIN; TUMOR PROTEIN;

EID: 84903142822     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep05403     Document Type: Article
Times cited : (30)

References (46)
  • 1
    • 0029790266 scopus 로고    scopus 로고
    • The lipocalin protein family: Structure and function
    • Flower, D. R. The lipocalin protein family: structure and function. Biochem J 318, 1-14 (1996).
    • (1996) Biochem J , vol.318 , pp. 1-14
    • Flower, D.R.1
  • 2
    • 0035813187 scopus 로고    scopus 로고
    • The high molecular weight urinary matrix metalloproteinase (MMP) activity is a complex of gelatinase B/MMP-9 and neutrophil gelatinase-associated lipocalin (NGAL). Modulation of MMP-9 activity by NGAL
    • Yan, L., Borregaard, N., Kjeldsen, L. & Moses, M. A. The high molecular weight urinary matrix metalloproteinase (MMP) activity is a complex of gelatinase B/MMP-9 and neutrophil gelatinase-associated lipocalin (NGAL). Modulation of MMP-9 activity by NGAL. J Biol Chem 276, 37258-65 (2001).
    • (2001) J Biol Chem , vol.276 , pp. 37258-37265
    • Yan, L.1    Borregaard, N.2    Kjeldsen, L.3    Moses, M.A.4
  • 3
    • 18744397511 scopus 로고    scopus 로고
    • An iron delivery pathway mediated by a lipocalin
    • Yang, J. et al. An iron delivery pathway mediated by a lipocalin. Mol Cell 10, 1045-56 (2002).
    • (2002) Mol Cell , vol.10 , pp. 1045-1056
    • Yang, J.1
  • 4
    • 84864306557 scopus 로고    scopus 로고
    • NGAL-Siderocalin in kidney disease
    • Paragas, N. et al. NGAL-Siderocalin in kidney disease. Biochim Biophys Acta 1823, 1451-8 (2012).
    • (2012) Biochim Biophys Acta , vol.1823 , pp. 1451-1458
    • Paragas, N.1
  • 5
    • 73649135741 scopus 로고    scopus 로고
    • Neutrophil gelatinase-associated lipocalin (NGAL) in human neoplasias: A new protein enters the scene
    • Bolignano, D1. et al. Neutrophil gelatinase-associated lipocalin (NGAL) in human neoplasias: a new protein enters the scene. Cancer Lett 288, 10-6 (2010).
    • (2010) Cancer Lett , vol.288 , pp. 10-16
    • Bolignano, D.1
  • 6
    • 84860222365 scopus 로고    scopus 로고
    • The multifaceted roles of neutrophil gelatinase associated lipocalin (NGAL) in inflammation and cancer
    • Chakraborty, S., Kaur, S., Guha, S. & Batra, S. K. The multifaceted roles of neutrophil gelatinase associated lipocalin (NGAL) in inflammation and cancer. Biochim Biophys Acta 1826, 129-69 (2012).
    • (2012) Biochim Biophys Acta , vol.1826 , pp. 129-169
    • Chakraborty, S.1    Kaur, S.2    Guha, S.3    Batra, S.K.4
  • 7
    • 34249914771 scopus 로고    scopus 로고
    • Up regulation of neutrophil gelatinase associated lipocalin in oesophageal squamous cell carcinoma: Significant correlation with cell differentiation and tumour invasion
    • Zhang, H. et al. Up regulation of neutrophil gelatinase associated lipocalin in oesophageal squamous cell carcinoma: significant correlation with cell differentiation and tumour invasion. J Clin Pathol 60, 555-561 (2007).
    • (2007) J Clin Pathol , vol.60 , pp. 555-561
    • Zhang, H.1
  • 8
    • 78650833527 scopus 로고    scopus 로고
    • Neutrophil gelatinase-associated lipocalin and its receptor: Independent prognostic factors of oesophageal squamous cell carcinoma
    • Du, Z. P. et al. Neutrophil gelatinase-associated lipocalin and its receptor: independent prognostic factors of oesophageal squamous cell carcinoma. J Clin Pathol 64, 69-74 (2011).
    • (2011) J Clin Pathol , vol.64 , pp. 69-74
    • Du, Z.P.1
  • 9
    • 58149271021 scopus 로고    scopus 로고
    • Integrated network analysis platform for protein-protein interactions
    • Wu, J. et al. Integrated network analysis platform for protein-protein interactions. Nat Methods 6, 75-7 (2009).
    • (2009) Nat Methods , vol.6 , pp. 75-77
    • Wu, J.1
  • 10
    • 84861331860 scopus 로고    scopus 로고
    • Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data
    • Li, M., Wu, X., Wang, J. & Pan, Y. Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data. BMC Bioinformatics 13, 109 (2012).
    • (2012) BMC Bioinformatics , vol.13 , pp. 109
    • Li, M.1    Wu, X.2    Wang, J.3    Pan, Y.4
  • 11
    • 77953766711 scopus 로고    scopus 로고
    • Gene expression: Protein interaction systems network modeling identifies transformation-associated molecules and pathways in ovarian cancer
    • Bapat, S. A. et al. Gene expression: protein interaction systems network modeling identifies transformation-associated molecules and pathways in ovarian cancer. Cancer Res 70, 4809-19 (2010).
    • (2010) Cancer Res , vol.70 , pp. 4809-4819
    • Bapat, S.A.1
  • 12
    • 33947252154 scopus 로고    scopus 로고
    • Network-based prediction of protein function
    • Sharan, R., Ulitsky, I. & Shamir, R. Network-based prediction of protein function. Mol Syst Biol 3, 88 (2007).
    • (2007) Mol Syst Biol , vol.3 , pp. 88
    • Sharan, R.1    Ulitsky, I.2    Shamir, R.3
  • 13
    • 84878789737 scopus 로고    scopus 로고
    • Disease gene identification by random walk on multigraphsmerging heterogeneous genomic and phenotype data
    • Li, Y. & Li, J. Disease gene identification by random walk on multigraphsmerging heterogeneous genomic and phenotype data. BMC Genomics 13 Suppl 7, S27 (2012).
    • (2012) BMC Genomics , vol.13 , Issue.SUPPL. 7
    • Li, Y.1    Li, J.2
  • 14
    • 0037012880 scopus 로고    scopus 로고
    • Specificity and stability in topology of protein networks
    • Maslov, S. & Sneppen, K. Specificity and stability in topology of protein networks. Science 296, 910-3 (2002).
    • (2002) Science , vol.296 , pp. 910-913
    • Maslov, S.1    Sneppen, K.2
  • 15
    • 34247623628 scopus 로고    scopus 로고
    • Getting connected: Analysis and principles of biological networks
    • Zhu, X., Gerstein, M. & Snyder, M. Getting connected: analysis and principles of biological networks. Genes Dev 21, 1010-24 (2007).
    • (2007) Genes Dev , vol.21 , pp. 1010-1024
    • Zhu, X.1    Gerstein, M.2    Snyder, M.3
  • 16
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabási, A. L. & Oltvai, Z. N. Network biology: understanding the cell's functional organization. Nat Rev Genet 5, 101-13 (2004).
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabási, A.L.1    Oltvai, Z.N.2
  • 17
    • 0034728351 scopus 로고    scopus 로고
    • Ligand preference inferred from the structure of neutrophil gelatinase associated lipocalin
    • Goetz, D. H. et al. Ligand preference inferred from the structure of neutrophil gelatinase associated lipocalin. Biochemistry 39, 1935-41 (2000).
    • (2000) Biochemistry , vol.39 , pp. 1935-1941
    • Goetz, D.H.1
  • 18
    • 12744272449 scopus 로고    scopus 로고
    • The endocytic receptor megalin binds the iron transporting neutrophil-gelatinase-associated lipocalin with high affinity and mediates its cellular uptake
    • Hvidberg, V. et al. The endocytic receptor megalin binds the iron transporting neutrophil-gelatinase-associated lipocalin with high affinity and mediates its cellular uptake. FEBS Lett 579, 773-7 (2005).
    • (2005) FEBS Lett , vol.579 , pp. 773-777
    • Hvidberg, V.1
  • 19
    • 34247173110 scopus 로고    scopus 로고
    • A novel alternative spliced variant of neutrophil gelatinaseassociated lipocalin receptor in oesophageal carcinoma cells
    • Fang, W. K. et al. A novel alternative spliced variant of neutrophil gelatinaseassociated lipocalin receptor in oesophageal carcinoma cells. Biochem J 403, 297-303 (2007).
    • (2007) Biochem J , vol.403 , pp. 297-303
    • Fang, W.K.1
  • 20
    • 78049485263 scopus 로고    scopus 로고
    • Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008
    • Ferlay, J. et al. Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008. Int J Cancer 127, 2893-2917 (2010).
    • (2010) Int J Cancer , vol.127 , pp. 2893-2917
    • Ferlay, J.1
  • 21
    • 12844277985 scopus 로고    scopus 로고
    • Estimates of cancer incidence in China for 2000 and projections for 2005
    • Yang, L. et al. Estimates of cancer incidence in China for 2000 and projections for 2005. Cancer Epidemiology Biomarkers and Prevention 14, 243-250 (2005).
    • (2005) Cancer Epidemiology Biomarkers and Prevention , vol.14 , pp. 243-250
    • Yang, L.1
  • 22
    • 67749127835 scopus 로고    scopus 로고
    • Layered functional network analysis of gene expression in human heart failure
    • Zhu, W., Yang, L. & Du, Z. Layered functional network analysis of gene expression in human heart failure. PLoS One 4, e6288 (2009).
    • (2009) PLoS One , vol.4
    • Zhu, W.1    Yang, L.2    Du, Z.3
  • 23
    • 62849126285 scopus 로고    scopus 로고
    • Disease candidate gene identification and prioritization using protein interaction networks
    • Chen, J., Aronow, B. J. & Jegga, A. G. Disease candidate gene identification and prioritization using protein interaction networks. BMC Bioinformatics 10, 73 (2009).
    • (2009) BMC Bioinformatics , vol.10 , pp. 73
    • Chen, J.1    Aronow, B.J.2    Jegga, A.G.3
  • 24
    • 84877053541 scopus 로고    scopus 로고
    • HDAC inhibitor trichostatin A suppresses esophageal squamous cell carcinoma metastasis through HADC2 reduced MMP-2/9
    • Wang, F. et al. HDAC inhibitor trichostatin A suppresses esophageal squamous cell carcinoma metastasis through HADC2 reduced MMP-2/9. Clin Invest Med 36, E87-94 (2013).
    • (2013) Clin Invest Med , vol.36
    • Wang, F.1
  • 25
    • 84879476461 scopus 로고    scopus 로고
    • TGFb1 and HGF protein secretion by esophageal squamous epithelial cells and stromal fibroblasts in oesophageal carcinogenesis
    • Xu, Z. et al. TGFb1 and HGF protein secretion by esophageal squamous epithelial cells and stromal fibroblasts in oesophageal carcinogenesis. Oncol Lett 6, 401-406 (2013).
    • (2013) Oncol Lett , vol.6 , pp. 401-406
    • Xu, Z.1
  • 26
    • 0025814854 scopus 로고
    • Factors influencing the acute phase protein levels in patients with esophageal cancer
    • Saito, T. et al. Factors influencing the acute phase protein levels in patients with esophageal cancer. Jpn J Surg 21, 402-11 (1991).
    • (1991) Jpn J Surg , vol.21 , pp. 402-411
    • Saito, T.1
  • 27
    • 77956625406 scopus 로고    scopus 로고
    • Plasma decorin predicts the presence of esophageal squamous cell carcinoma
    • Wu, I. C. et al. Plasma decorin predicts the presence of esophageal squamous cell carcinoma. Int J Cancer 127, 2138-46 (2010).
    • (2010) Int J Cancer , vol.127 , pp. 2138-2146
    • Wu, I.C.1
  • 28
    • 67449095769 scopus 로고    scopus 로고
    • Prognostic significance of altered expression of SDC2 and CYR61 in esophageal squamous cell carcinoma
    • Huang, X. et al. Prognostic significance of altered expression of SDC2 and CYR61 in esophageal squamous cell carcinoma. Oncol Rep 21, 1123-9 (2009).
    • (2009) Oncol Rep , vol.21 , pp. 1123-1129
    • Huang, X.1
  • 29
    • 33846326304 scopus 로고    scopus 로고
    • Genetic screening for signal transduction in the era of network biology
    • Friedman, A. & Perrimon, N. Genetic screening for signal transduction in the era of network biology. Cell 128, 225-231 (2007).
    • (2007) Cell , vol.128 , pp. 225-231
    • Friedman, A.1    Perrimon, N.2
  • 30
    • 55949100580 scopus 로고    scopus 로고
    • Identification of a new JNK inhibitor targeting the JNK-JIP interaction site
    • Stebbins, J. L. et al. Identification of a new JNK inhibitor targeting the JNK-JIP interaction site. Proc Natl Acad Sci U S A 105, 16809-13 (2008).
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 16809-16813
    • Stebbins, J.L.1
  • 31
    • 34247580832 scopus 로고    scopus 로고
    • JNK pathway: Diseases and therapeutic potential
    • Cui, J., Zhang, M., Zhang, Y. Q. & Xu, Z. H. JNK pathway: diseases and therapeutic potential. Acta Pharmacol Sin 28, 601-8 (2007).
    • (2007) Acta Pharmacol Sin , vol.28 , pp. 601-608
    • Cui, J.1    Zhang, M.2    Zhang, Y.Q.3    Xu, Z.H.4
  • 33
    • 84870376109 scopus 로고    scopus 로고
    • Cancer genetics and genomics of human FOX family genes
    • Katoh, M. et al. Cancer genetics and genomics of human FOX family genes. Cancer Lett 328, 198-206 (2013).
    • (2013) Cancer Lett , vol.328 , pp. 198-206
    • Katoh, M.1
  • 34
    • 84864012904 scopus 로고    scopus 로고
    • Forkhead box protein p1 is a transcriptional repressor of immune signaling in the CNS: Implications for transcriptional dysregulation in Huntington disease
    • Tang, B. et al. Forkhead box protein p1 is a transcriptional repressor of immune signaling in the CNS: implications for transcriptional dysregulation in Huntington disease. Hum Mol Genet 21, 3097-111 (2012).
    • (2012) Hum Mol Genet , vol.21 , pp. 3097-3111
    • Tang, B.1
  • 35
    • 84893809652 scopus 로고    scopus 로고
    • Cytoplasmic expression of the ELAV-like protein HuR as a potential prognostic marker in esophageal squamous cell carcinoma
    • Zhang, C. et al. Cytoplasmic expression of the ELAV-like protein HuR as a potential prognostic marker in esophageal squamous cell carcinoma. Tumour Biol 35, 73-80 (2014).
    • (2014) Tumour Biol , vol.35 , pp. 73-80
    • Zhang, C.1
  • 36
    • 11144314814 scopus 로고    scopus 로고
    • Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron
    • Flo, T. H. et al. Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron. Nature 432, 917-921 (2004).
    • (2004) Nature , vol.432 , pp. 917-921
    • Flo, T.H.1
  • 37
    • 75149194322 scopus 로고    scopus 로고
    • Alpha2-macroglobulin inhibits the malignant properties of astrocytoma cells by impeding beta-catenin signaling
    • Lindner, I. et al. Alpha2-macroglobulin inhibits the malignant properties of astrocytoma cells by impeding beta-catenin signaling. Cancer Res 70, 277-87 (2010).
    • (2010) Cancer Res , vol.70 , pp. 277-287
    • Lindner, I.1
  • 38
    • 84901415560 scopus 로고    scopus 로고
    • Decorin deficiency promotes hepatic carcinogenesis
    • Horváth, Z. et al. Decorin deficiency promotes hepatic carcinogenesis. Matrix Biol 35, 194-205 (2014).
    • (2014) Matrix Biol , vol.35 , pp. 194-205
    • Horváth, Z.1
  • 39
    • 79955917527 scopus 로고    scopus 로고
    • Human protein reference database and human proteinpedia as discovery resources for molecular biotechnology
    • Goel, R., Muthusamy, B., Pandey, A. & Prasad, T. S. Human protein reference database and human proteinpedia as discovery resources for molecular biotechnology. Mol Biotechnol 48, 87-95 (2011).
    • (2011) Mol Biotechnol , vol.48 , pp. 87-95
    • Goel, R.1    Muthusamy, B.2    Pandey, A.3    Prasad, T.S.4
  • 40
    • 84874947727 scopus 로고    scopus 로고
    • The BioGRID interaction database: 2013 update
    • (Database issue)
    • Chatr-Aryamontri, A. et al. The BioGRID interaction database: 2013 update. Nucleic Acids Res 41(Database issue), D816-23 (2013).
    • (2013) Nucleic Acids Res , vol.41
    • Chatr-Aryamontri, A.1
  • 41
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: New features for data integration and network visualization
    • Smoot, M. E. et al. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27, 431-2 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 431-432
    • Smoot, M.E.1
  • 42
    • 38349164409 scopus 로고    scopus 로고
    • Computing topological parameters of biological networks
    • Assenov, Y. et al. Computing topological parameters of biological networks. Bioinformatics 24, 282-4 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 282-284
    • Assenov, Y.1
  • 43
    • 84883495916 scopus 로고    scopus 로고
    • Dissection of miRNA-miRNA interaction in esophageal squamous cell carcinoma
    • Wu, B. et al. Dissection of miRNA-miRNA Interaction in Esophageal Squamous Cell Carcinoma. PLoS One 8, e73191 (2013).
    • (2013) PLoS One , vol.8
    • Wu, B.1
  • 44
    • 34249751614 scopus 로고    scopus 로고
    • Cerebral: A Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation
    • Barsky, A., Gardy, J. L., Hancock, R. E. & Munzner, T. Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation. Bioinformatics 23, 1040-2 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 1040-1042
    • Barsky, A.1    Gardy, J.L.2    Hancock, R.E.3    Munzner, T.4
  • 45
    • 43349094507 scopus 로고    scopus 로고
    • The igraph software package for complex network research
    • Csardi, G. & Nepusz, T. The igraph software package for complex network research. InterJournal Complex Systems 5, 1695 (2006).
    • (2006) InterJournal Complex Systems , vol.5 , pp. 1695
    • Csardi, G.1    Nepusz, T.2
  • 46
    • 64549104807 scopus 로고    scopus 로고
    • ClueGO: A Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
    • Bindea, G. et al. ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinformatics 25, 1091-3 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1091-1093
    • Bindea, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.