On the crucial cerebellar wound healing-related pathways and their cross-talks after traumatic brain injury in Danio rerio

PLoS ONE

Volumn 9, Issue 6, 2014, Pages

  Wu, Chia Chou ^a   Tsai, Tsung Han ^a   Chang, Chieh ^a   Lee, Tian Thai ^a   Lin, Che ^a   Cheng, Irene Han Juo ^b   Sun, Mu Chien ^c   Chuang, Yung Jen ^a   Chen, Bor Sen ^a  

^a NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^b NATIONAL YANG MING UNIVERSITY   (Taiwan)

^c CHANGHUA CHRISTIAN HOSPITAL   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMOKINE; P21 ACTIVATED KINASE 2; PHOSPHATIDYLINOSITOL 3 KINASE; PLEXIN; PLEXIN A3; UNCLASSIFIED DRUG; ZEBRAFISH PROTEIN;

ANGIOGENESIS; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; CEREBELLUM CORTEX; CONTROLLED STUDY; MICROARRAY ANALYSIS; MOLECULAR INTERACTION; NERVE FIBER; NERVOUS SYSTEM DEVELOPMENT; NONHUMAN; ONTOLOGY; PHENOTYPE; PROTEIN ANALYSIS; PROTEIN PROTEIN INTERACTION; SIGNAL TRANSDUCTION; TRAUMATIC BRAIN INJURY; WOUND HEALING; ZEBRA FISH; ANIMAL; BIOLOGICAL MODEL; BRAIN INJURY; CEREBELLUM; DISEASE MODEL; HUMAN; METABOLISM; PATHOPHYSIOLOGY; PROCEDURES; PROTEIN MICROARRAY; PROTEOMICS;

ANIMALS; BRAIN INJURIES; CEREBELLUM; DISEASE MODELS, ANIMAL; HUMANS; MODELS, NEUROLOGICAL; NEUROGENESIS; PHOSPHATIDYLINOSITOL 3-KINASE; PROTEIN ARRAY ANALYSIS; PROTEIN INTERACTION MAPS; PROTEOMICS; SIGNAL TRANSDUCTION; WOUND HEALING; ZEBRAFISH; ZEBRAFISH PROTEINS;

EID: 84903140739     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0097902     Document Type: Article

References (49)

1. Faul M, Xu L, Wald MM, Coronado V, Dellinger AM (2010) Traumatic Brain Injury in the United States: National Estimates of Prevalence and Incidence, 2002-2006. Injury Prevention 16: A268-A268.
2. Kizil C, Kaslin J, Kroehne V, Brand M (2012) Adult neurogenesis and brain regeneration in zebrafish. Developmental Neurobiology 72: 429-461.
3. Tanaka EM, Ferretti P (2009) Considering the evolution of regeneration in the central nervous system. Nature Reviews Neuroscience 10: 713-723.
4. Horner PJ, Gage FH (2000) Regenerating the damaged central nervous system. Nature 407: 963-970.
5. Antos CL, Tanaka EM (2010) Vertebrates That Regenerate as Models for Guiding Stem Cells. Cell Biology of Stem Cells 695: 184-214.
6. Poss KD, Wilson LG, Keating MT (2002) Heart regeneration in zebrafish. Science 298: 2188-2190. (Pubitemid 35471243)
7. Guo Y, Ma L, Cristofanilli M, Hart RP, Hao A, et al. (2011) Transcription factor Sox11b is involved in spinal cord regeneration in adult zebrafish. Neuroscience 172: 329-341.
8. Qin Z, Barthel LK, Raymond PA (2009) Genetic evidence for shared mechanisms of epimorphic regeneration in zebrafish. Proceedings of the National Academy of Sciences of the United States of America 106: 9310-9315.
9. Craig SE, Calinescu AA, Hitchcock PF (2008) Identification of the molecular signatures integral to regenerating photoreceptors in the retina of the zebra fish. J Ocul Biol Dis Infor 1: 73-84.
10. McCurley AT, Callard GV (2010) Time Course Analysis of Gene Expression Patterns in Zebrafish Eye During Optic Nerve Regeneration. J Exp Neurosci 2010: 17-33.
11. Cameron DA, Gentile KL, Middleton FA, Yurco P (2005) Gene expression profiles of intact and regenerating zebrafish retina. Mol Vis 11: 775-791. (Pubitemid 41410193)
12. Kishimoto N, Shimizu K, Sawamoto K (2012) Neuronal regeneration in a zebrafish model of adult brain injury. Disease Models & Mechanisms 5: 200-209.
13. Postlethwait J, Amores A, Force A, Yan YL (1999) The zebrafish genome. Methods Cell Biol 60: 149-163.
14. Wang YC, Chen BS (2010) Integrated cellular network of transcription regulations and protein-protein interactions. BMC Syst Biol 4: 20.
15. Ernst J, Bar-Joseph Z (2006) STEM: a tool for the analysis of short time series gene expression data. BMC Bioinformatics 7: 191.
16. Mi H, Muruganujan A, Thomas PD (2013) PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees. Nucleic Acids Res 41: D377-386.
17. Levin ED, Cerutti DT (2009) Behavioral Neuroscience of Zebrafish. In: Buccafusco JJ, editor. Methods of Behavior Analysis in Neuroscience. 2nd ed. Boca Raton (FL).
18. Kalueff AV, Gebhardt M, Stewart AM, Cachat JM, Brimmer M, et al. (2013) Towards a comprehensive catalog of zebrafish behavior 1.0 and beyond. Zebrafish 10: 70-86.
19. Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, et al. (2006) BioGRID: a general repository for interaction datasets. Nucleic Acids Research 34: D535-D539.
20. Croft D, O'Kelly G, Wu GM, Haw R, Gillespie M, et al. (2011) Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Research 39: D691-D697.
21. Bradford Y, Conlin T, Dunn N, Fashena D, Frazer K, et al. (2011) ZFIN: enhancements and updates to the zebrafish model organism database. Nucleic Acids Research 39: D822-D829.
22. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene Ontology: tool for the unification of biology. Nature Genetics 25: 25-29. (Pubitemid 30257031)
23. Hui SP, Sengupta D, Lee SG, Sen T, Kundu S, et al. (2014) Genome wide expression profiling during spinal cord regeneration identifies comprehensive cellular responses in zebrafish. PLoS One 9: e84212.
24. Singer AJ, Clark RAF (1999) Mechanisms of disease - Cutaneous wound healing. New England Journal of Medicine 341: 738-746. (Pubitemid 29407375)
25. Stadelmann WK, Digenis AG, Tobin GR (1998) Physiology and healing dynamics of chronic cutaneous wounds. American Journal of Surgery 176: 26s-38s. (Pubitemid 28460655)
26. Mechoulam R, Panikashvili D, Shohami E (2002) Cannabinoids and brain injury: therapeutic implications. Trends in Molecular Medicine 8: 58-61. (Pubitemid 34094440)
27. Shohami E, Cohen-Yeshurun A, Magid L, Algali M, Mechoulam R (2011) Endocannabinoids and traumatic brain injury. British Journal of Pharmacology 163: 1402-1410.
28. Rajaram MVS, Ganesan LP, Parsa KVL, Butchar JP, Gunn JS, et al. (2006) Akt/protein kinase B modulates macrophage inflammatory response to Francisella infection and confers a survival advantage in mice. Journal of Immunology 177: 6317-6324. (Pubitemid 44628850)
29. Neves SR, Ram PT, Iyengar R (2002) G protein pathways. Science 296: 1636-1639. (Pubitemid 34579147)
30. Lin MT, Beal MF (2006) Mitochondrial dysfunction and oxidative stress in neurodegenerative diseases. Nature 443: 787-795. (Pubitemid 44622683)
31. Lukacs NW (2001) Role of chemokines in the pathogenesis of asthma. Nature Reviews Immunology 1: 108-116.
32. Vicente-Manzanares M, Sancho D, Yanez-Mo M, Sanchez-Madrid F (2002) The leukocyte cytoskeleton in cell migration and immune interactions. International Review of Cytology - a Survey of Cell Biology, Vol 216 216: 233-289.
33. Ridley AJ (2001) Rho GTPases and cell migration. Journal of Cell Science 114: 2713-2722.
34. Giancotti FG, Ruoslahti E (1999) Transduction - Integrin signaling. Science 285: 1028-1032.
35. Chen BS, Yang SK, Lan CY, Chuang YJ (2008) A systems biology approach to construct the gene regulatory network of systemic inflammation via microarray and databases mining. BMC Medical Genomics 1.
36. Yang SK, Wang YC, Chao CC, Chuang YJ, Lan CY, et al. (2010) Dynamic cross-talk analysis among TNF-R, TLR-4 and IL-1R signalings in TNF alpha-induced inflammatory responses. BMC Medical Genomics 3.
37. Jiang W, Zhang Y, Xiao L, Van Cleemput J, Ji SP, et al. (2005) Cannabinoids promote embryonic and adult hippocampus neurogenesis and produce anxiolytic- and antidepressant-like effects. Journal of Clinical Investigation 115: 3104-3116. (Pubitemid 41567575)
38. Martins RAP, Pearson RA (2008) Control of cell proliferation by neurotransmitters in the developing vertebrate retina. Brain Research 1192: 37-60. (Pubitemid 351199482)
39. Berg DA, Belnoue L, Song HJ, Simon A (2013) Neurotransmitter-mediated control of neurogenesis in the adult vertebrate brain. Development 140: 2548-2561.
40. Qiu YH, Peng YP, Wang JH (1996) Immunoregulatory role of neurotransmitters. Advances in Neuroimmunology 6: 223-231.
41. Blalock JE (1992) Production of peptide hormones and neurotransmitters by the immune system. Chem Immunol 52: 1-24.
42. Webster JI, Tonelli L, Sternberg EM (2002) Neuroendocrine regulation of immunity. Annu Rev Immunol 20: 125-163. (Pubitemid 34295785)
43. Guingab-Cagmat JD, Cagmat EB, Hayes RL, Anagli J (2013) Integration of proteomics, bioinformatics, and systems biology in traumatic brain injury biomarker discovery. Front Neurol 4: 61.
44. Neselius S, Brisby H, Theodorsson A, Blennow K, Zetterberg H, et al. (2012) CSF-Biomarkers in Olympic Boxing: Diagnosis and Effects of Repetitive Head Trauma. PLoS One 7.
45. Kyritsis N, Kizil C, Zocher S, Kroehne V, Kaslin J, et al. (2012) Acute Inflammation Initiates the Regenerative Response in the Adult Zebrafish Brain. Science 338: 1353-1356.
46. DeKosky ST, Blennow K, Ikonomovic MD, Gandy S (2013) Acute and chronic traumatic encephalopathies: pathogenesis and biomarkers. Nature Reviews Neurology 9: 192-200.
47. Feala JD, Abdulhameed MD, Yu C, Dutta B, Yu X, et al. (2013) Systems biology approaches for discovering biomarkers for traumatic brain injury. J Neurotrauma 30: 1101-1116.
48. Basu S, Dasgupta PS (2000) Dopamine, a neurotransmitter, influences the immune system. Journal of Neuroimmunology 102: 113-124.
49. Piomelli D (2003) The molecular logic of endocannabinoid signalling. Nature Reviews Neuroscience 4: 873-884.