메뉴 건너뛰기




Volumn 118, Issue 24, 2014, Pages 6733-6741

Interactions of a water-soluble fullerene derivative with amyloid-β protofibrils: Dynamics, binding mechanism, and the resulting salt-bridge disruption

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BINDING ENERGY; GLYCOPROTEINS; HYDROPHOBICITY; MOLECULAR DYNAMICS; PEPTIDES;

EID: 84902974997     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp503458w     Document Type: Article
Times cited : (47)

References (55)
  • 1
    • 33746377894 scopus 로고    scopus 로고
    • Protein Misfolding, Functional Amyloid, and Human Disease
    • Chiti, F.; Dobson, C. M. Protein Misfolding, Functional Amyloid, and Human Disease Annu. Rev. Biochem. 2006, 75, 333-366
    • (2006) Annu. Rev. Biochem. , vol.75 , pp. 333-366
    • Chiti, F.1    Dobson, C.M.2
  • 2
    • 0035066332 scopus 로고    scopus 로고
    • Alzheimer's Disease: Genes, Proteins, and Therapy
    • Selkoe, D. J. Alzheimer's Disease: Genes, Proteins, and Therapy Physiol. Rev. 2001, 81, 741-766
    • (2001) Physiol. Rev. , vol.81 , pp. 741-766
    • Selkoe, D.J.1
  • 3
    • 0037135111 scopus 로고    scopus 로고
    • The Amyloid Hypothesis of Alzheimer's Disease: Progress and Problems on the Road to Therapeutics
    • Hardy, J.; Selkoe, D. J. The Amyloid Hypothesis of Alzheimer's Disease: Progress and Problems on the Road to Therapeutics Science 2002, 297, 353-356
    • (2002) Science , vol.297 , pp. 353-356
    • Hardy, J.1    Selkoe, D.J.2
  • 4
    • 0033600274 scopus 로고    scopus 로고
    • Translating Cell Biology into Therapeutic Advances in Alzheimer's Disease
    • Selkoe, D. J. Translating Cell Biology into Therapeutic Advances in Alzheimer's Disease Nature 1999, 399, A23-A31
    • (1999) Nature , vol.399
    • Selkoe, D.J.1
  • 5
    • 0031871740 scopus 로고    scopus 로고
    • Detection of Single Amyloid β-Protein Aggregates in the Cerebrospinal Fluid of Alzheimer's Patients by Fluorescence Correlation Spectroscopy
    • Pitschke, M.; Prior, R.; Haupt, M.; Riesner, D. Detection of Single Amyloid β-Protein Aggregates in the Cerebrospinal Fluid of Alzheimer's Patients by Fluorescence Correlation Spectroscopy Nat. Med. 1998, 4, 832-834
    • (1998) Nat. Med. , vol.4 , pp. 832-834
    • Pitschke, M.1    Prior, R.2    Haupt, M.3    Riesner, D.4
  • 8
    • 79953765150 scopus 로고    scopus 로고
    • Solid-State NMR Studies of Amyloid Fibril Structure
    • Tycko, R. Solid-State NMR Studies of Amyloid Fibril Structure Annu. Rev. Phys. Chem. 2011, 62, 279-299
    • (2011) Annu. Rev. Phys. Chem. , vol.62 , pp. 279-299
    • Tycko, R.1
  • 9
    • 34248190279 scopus 로고    scopus 로고
    • Aβ Oligomers - A Decade of Discovery
    • Walsh, D. M.; Selkoe, D. J. Aβ Oligomers - A Decade of Discovery J. Neurochem. 2007, 101, 1172-1184
    • (2007) J. Neurochem. , vol.101 , pp. 1172-1184
    • Walsh, D.M.1    Selkoe, D.J.2
  • 11
    • 77951271571 scopus 로고    scopus 로고
    • Principles Governing Oligomer Formation in Amyloidogenic Peptides
    • Straub, J. E.; Thirumalai, D. Principles Governing Oligomer Formation in Amyloidogenic Peptides Curr. Opin. Struc. Biol. 2010, 20, 187-195
    • (2010) Curr. Opin. Struc. Biol. , vol.20 , pp. 187-195
    • Straub, J.E.1    Thirumalai, D.2
  • 12
    • 79953118623 scopus 로고    scopus 로고
    • Toward a Molecular Theory of Early and Late Events in Monomer to Amyloid Fibril Formation
    • Straub, J. E.; Thirumalai, D. Toward a Molecular Theory of Early and Late Events in Monomer to Amyloid Fibril Formation Annu. Rev. Phys. Chem. 2011, 62, 437-463
    • (2011) Annu. Rev. Phys. Chem. , vol.62 , pp. 437-463
    • Straub, J.E.1    Thirumalai, D.2
  • 13
    • 77953113490 scopus 로고    scopus 로고
    • Zinc Ions Promote Alzheimer Aβ Aggregation via Population Shift of Polymorphic States
    • Miller, Y.; Ma, B.; Nussinov, R. Zinc Ions Promote Alzheimer Aβ Aggregation via Population Shift of Polymorphic States Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 9490-9495
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 9490-9495
    • Miller, Y.1    Ma, B.2    Nussinov, R.3
  • 14
    • 80155209561 scopus 로고    scopus 로고
    • Misfolded Proteins in Alzheimer's Disease and Type II Diabetes
    • DeToma, A. S.; Salamekh, S.; Ramamoorthy, A.; Lim, M. H. Misfolded Proteins in Alzheimer's Disease and Type II Diabetes Chem. Soc. Rev. 2012, 41, 608-621
    • (2012) Chem. Soc. Rev. , vol.41 , pp. 608-621
    • Detoma, A.S.1    Salamekh, S.2    Ramamoorthy, A.3    Lim, M.H.4
  • 15
  • 18
    • 0037418703 scopus 로고    scopus 로고
    • Fullerene Inhibits β-Amyloid Peptide Aggregation
    • Kim, J. E.; Lee, M. Fullerene Inhibits β-Amyloid Peptide Aggregation Biochem. Biophys. Res. Commun. 2003, 303, 576-579
    • (2003) Biochem. Biophys. Res. Commun. , vol.303 , pp. 576-579
    • Kim, J.E.1    Lee, M.2
  • 19
    • 0034629320 scopus 로고    scopus 로고
    • Blockage of Amyloid β Peptide-Induced Cytosolic Free Calcium by Fullerenol-1, Carboxylate C60 in PC12 Cells
    • Huang, H. M.; Ou, H. C.; Hsieh, S. J.; Chiang, L. Y. Blockage of Amyloid β Peptide-Induced Cytosolic Free Calcium by Fullerenol-1, Carboxylate C60 in PC12 Cells Life Sci. 2000, 66, 1525-1533
    • (2000) Life Sci. , vol.66 , pp. 1525-1533
    • Huang, H.M.1    Ou, H.C.2    Hsieh, S.J.3    Chiang, L.Y.4
  • 23
    • 84886503164 scopus 로고    scopus 로고
    • Fullerenols as a New Therapeutic Approach in Nanomedicine
    • Grebowski, J.; Kazmierska, P.; Krokosz, A. Fullerenols as a New Therapeutic Approach in Nanomedicine BioMed Res. Int. 2013, 2013, 751913
    • (2013) BioMed Res. Int. , vol.2013 , pp. 751913
    • Grebowski, J.1    Kazmierska, P.2    Krokosz, A.3
  • 25
  • 26
    • 84864695671 scopus 로고    scopus 로고
    • Binding of Congo Red to Amyloid Protofibrils of the Alzheimer Aβ9-40 Peptide Probed by Molecular Dynamics Simulations
    • Wu, C.; Scott, J.; Shea, J. E. Binding of Congo Red to Amyloid Protofibrils of the Alzheimer Aβ9-40 Peptide Probed by Molecular Dynamics Simulations Biophys. J. 2012, 103, 550-557
    • (2012) Biophys. J. , vol.103 , pp. 550-557
    • Wu, C.1    Scott, J.2    Shea, J.E.3
  • 27
    • 0037418703 scopus 로고    scopus 로고
    • Fullerene Inhibits β-Amyloid Peptide Aggregation
    • Kim, J. E.; Lee, M. Fullerene Inhibits β-Amyloid Peptide Aggregation Biochem. Biophys. Res. Commun. 2003, 303, 576-579
    • (2003) Biochem. Biophys. Res. Commun. , vol.303 , pp. 576-579
    • Kim, J.E.1    Lee, M.2
  • 28
    • 80555129406 scopus 로고    scopus 로고
    • Structure and Dynamics of 1,2-Dimethoxyethane and 1,2-Dimethoxypropane in Aqueous and Non-Aqueous Solutions: A Molecular Dynamics Study
    • Hezaveh, S.; Samanta, S.; Milano, G.; Roccatano, D. Structure and Dynamics of 1,2-Dimethoxyethane and 1,2-Dimethoxypropane in Aqueous and Non-Aqueous Solutions: A Molecular Dynamics Study J. Chem. Phys. 2011, 135, 164501
    • (2011) J. Chem. Phys. , vol.135 , pp. 164501
    • Hezaveh, S.1    Samanta, S.2    Milano, G.3    Roccatano, D.4
  • 29
    • 33748689799 scopus 로고    scopus 로고
    • Simulations as Analytical Tools to Understand Protein Aggregation and Predict Amyloid Conformation
    • Ma, B. Y.; Nussinov, R. Simulations as Analytical Tools to Understand Protein Aggregation and Predict Amyloid Conformation Curr. Opin. Chem. Biol. 2006, 10, 445-452
    • (2006) Curr. Opin. Chem. Biol. , vol.10 , pp. 445-452
    • Ma, B.Y.1    Nussinov, R.2
  • 30
    • 84884217594 scopus 로고    scopus 로고
    • Molecular Structure of β-Amyloid Fibrils in Alzheimer's Disease Brain Tissue
    • Lu, J. X.; Qiang, W.; Yau, W. M.; Schwieters, C. D.; Meredith, S. C.; Tycko, R. Molecular Structure of β-Amyloid Fibrils in Alzheimer's Disease Brain Tissue Cell. 2013, 154, 1257-1268
    • (2013) Cell. , vol.154 , pp. 1257-1268
    • Lu, J.X.1    Qiang, W.2    Yau, W.M.3    Schwieters, C.D.4    Meredith, S.C.5    Tycko, R.6
  • 31
    • 46249092554 scopus 로고    scopus 로고
    • GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
    • Hess, B.; Kutzner, C.; van der Spoel, D.; Lindahl, E. GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation J. Chem. Theory Comput. 2008, 4, 435-447
    • (2008) J. Chem. Theory Comput. , vol.4 , pp. 435-447
    • Hess, B.1    Kutzner, C.2    Van Der Spoel, D.3    Lindahl, E.4
  • 34
    • 0000388705 scopus 로고    scopus 로고
    • LINCS: A Linear Constraint Solver for Molecular Simulations
    • Hess, B.; Bekker, H.; Berendsen, H. J.; Fraaije, J. G. LINCS: A Linear Constraint Solver for Molecular Simulations J. Comput. Chem. 1997, 18, 1463-1472
    • (1997) J. Comput. Chem. , vol.18 , pp. 1463-1472
    • Hess, B.1    Bekker, H.2    Berendsen, H.J.3    Fraaije, J.G.4
  • 35
    • 84986440341 scopus 로고
    • Settle: An Analytical Version of the SHAKE and RATTLE Algorithm for Rigid Water Models
    • Miyamoto, S.; Kollman, P. A. Settle: An Analytical Version of the SHAKE and RATTLE Algorithm for Rigid Water Models J. Comput. Chem. 1992, 13, 952-962
    • (1992) J. Comput. Chem. , vol.13 , pp. 952-962
    • Miyamoto, S.1    Kollman, P.A.2
  • 36
    • 33846823909 scopus 로고
    • Particle Mesh Eward: An N log(N) Method for Ewald Sums in Large Systems
    • Darden, T.; York, D.; Pedersoen, L. Particle Mesh Eward: An N log(N) Method for Ewald Sums in Large Systems J. Phys. Chem. B 1993, 98, 10089
    • (1993) J. Phys. Chem. B , vol.98 , pp. 10089
    • Darden, T.1    York, D.2    Pedersoen, L.3
  • 37
    • 33846086933 scopus 로고    scopus 로고
    • Canonical Sampling through Velocity Rescaling
    • Bussi, G.; Donadio, D.; Parrinello, M. Canonical Sampling through Velocity Rescaling J. Chem. Phys. 2007, 126, 014101
    • (2007) J. Chem. Phys. , vol.126 , pp. 014101
    • Bussi, G.1    Donadio, D.2    Parrinello, M.3
  • 38
    • 0019707626 scopus 로고
    • Polymorphic Transitions in Single-Crystals - A New Molecular Dynamics Method
    • Parrinello, M.; Rahman, A. Polymorphic Transitions in Single-Crystals - A New Molecular Dynamics Method J. Appl. Phys. 1981, 52, 7182-7190
    • (1981) J. Appl. Phys. , vol.52 , pp. 7182-7190
    • Parrinello, M.1    Rahman, A.2
  • 41
    • 1842479952 scopus 로고    scopus 로고
    • Exploring Protein Native States and Large-Scale Conformational Changes with a Modified Generalized Born Model
    • Onufriev, A.; Bashford, D.; Case, D. A. Exploring Protein Native States and Large-Scale Conformational Changes with a Modified Generalized Born Model Proteins 2004, 55, 383-394
    • (2004) Proteins , vol.55 , pp. 383-394
    • Onufriev, A.1    Bashford, D.2    Case, D.A.3
  • 42
    • 20644449471 scopus 로고    scopus 로고
    • Modification of the Generalized Born Model Suitable for Macromolecules
    • Onufriev, A.; Bashford, D.; Case, D. A. Modification of the Generalized Born Model Suitable for Macromolecules J. Phys. Chem. B 2000, 104, 3712-3720
    • (2000) J. Phys. Chem. B , vol.104 , pp. 3712-3720
    • Onufriev, A.1    Bashford, D.2    Case, D.A.3
  • 43
    • 84879744934 scopus 로고    scopus 로고
    • Tanshinones Inhibit Amyloid Aggregation by Amyloid-β Peptide, Disaggregate Amyloid Fibrils, and Protect Cultured Cells
    • Wang, Q.; Yu, X.; Patal, K.; Hu, R.; Chuang, S.; Zhang, G.; Zheng, J. Tanshinones Inhibit Amyloid Aggregation by Amyloid-β Peptide, Disaggregate Amyloid Fibrils, and Protect Cultured Cells ACS. Chem. Neurosci. 2013, 4, 1004-1015
    • (2013) ACS. Chem. Neurosci. , vol.4 , pp. 1004-1015
    • Wang, Q.1    Yu, X.2    Patal, K.3    Hu, R.4    Chuang, S.5    Zhang, G.6    Zheng, J.7
  • 44
    • 84876488340 scopus 로고    scopus 로고
    • Molecular Mechanism of the Inhibition of EGCG on the Alzheimer Aβ1-42 Dimer
    • Zhang, T.; Zhang, J.; Derreumaux, P.; Mu, Y. Molecular Mechanism of the Inhibition of EGCG on the Alzheimer Aβ1-42 Dimer J. Phys. Chem. B 2013, 117, 3993-4002
    • (2013) J. Phys. Chem. B , vol.117 , pp. 3993-4002
    • Zhang, T.1    Zhang, J.2    Derreumaux, P.3    Mu, Y.4
  • 45
    • 84882907930 scopus 로고    scopus 로고
    • The Stability of Cylindrin β-Barrel Amyloid Oligomer Models-A Molecular Dynamics Study
    • Berhanu, W. M.; Hansmann, U. H. E. The Stability of Cylindrin β-Barrel Amyloid Oligomer Models-A Molecular Dynamics Study Proteins 2013, 81, 1542-1555
    • (2013) Proteins , vol.81 , pp. 1542-1555
    • Berhanu, W.M.1    Hansmann, U.H.E.2
  • 46
    • 59449095246 scopus 로고    scopus 로고
    • Determinants of the Unexpected Stability of RNA Fluorobenzene Self Pairs
    • Kopitz, H.; Zivkovic, A.; Engels, J. W.; Gohlke, H. Determinants of the Unexpected Stability of RNA Fluorobenzene Self Pairs ChemBioChem 2008, 9, 2619-2622
    • (2008) ChemBioChem , vol.9 , pp. 2619-2622
    • Kopitz, H.1    Zivkovic, A.2    Engels, J.W.3    Gohlke, H.4
  • 47
    • 0037197254 scopus 로고    scopus 로고
    • Novel Computer Program for Fast Exact Calculation of Accessible and Molecular Surface Areas and Average Surface Curvature
    • Tsodikov, O. V.; Record, M. T.; Sergeev, Y. V. Novel Computer Program for Fast Exact Calculation of Accessible and Molecular Surface Areas and Average Surface Curvature J. Comput. Chem. 2002, 23, 600-609
    • (2002) J. Comput. Chem. , vol.23 , pp. 600-609
    • Tsodikov, O.V.1    Record, M.T.2    Sergeev, Y.V.3
  • 48
    • 77649092874 scopus 로고    scopus 로고
    • Amyloid-β42 Oligomer Structures from Fibrils: A Systematic Molecular Dynamics Study
    • Horn, A. H. C.; Sticht, H. Amyloid-β42 Oligomer Structures from Fibrils: A Systematic Molecular Dynamics Study J. Phys. Chem. B 2010, 114, 2219-2226
    • (2010) J. Phys. Chem. B , vol.114 , pp. 2219-2226
    • Horn, A.H.C.1    Sticht, H.2
  • 49
    • 33645462298 scopus 로고    scopus 로고
    • Interaction of C60-Fullerene and Carboxyfullerene with Proteins: Docking and Binding Site Alignment
    • Benyamini, H. Interaction of C60-Fullerene and Carboxyfullerene with Proteins: Docking and Binding Site Alignment Bioconjugate Chem. 2006, 17, 378-386
    • (2006) Bioconjugate Chem. , vol.17 , pp. 378-386
    • Benyamini, H.1
  • 50
    • 0037609791 scopus 로고    scopus 로고
    • Protein-Protein Interactions: Structurally Conserved Residues Distinguish between Binding Sites and Exposed Protein Surfaces
    • Ma, B.; Elkayam, T.; Wolfson, H.; Nussinov, R. Protein-Protein Interactions: Structurally Conserved Residues Distinguish between Binding Sites and Exposed Protein Surfaces Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 5772-5777
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 5772-5777
    • Ma, B.1    Elkayam, T.2    Wolfson, H.3    Nussinov, R.4
  • 52
    • 0036135139 scopus 로고    scopus 로고
    • A Possible Role for Π-Stacking in the Self-Assembly of Amyloid Fibrils
    • Gazit, E. A Possible Role For Π-Stacking in the Self-Assembly of Amyloid Fibrils FASEB J. 2002, 16, 77-83
    • (2002) FASEB J. , vol.16 , pp. 77-83
    • Gazit, E.1
  • 53
    • 0000714715 scopus 로고    scopus 로고
    • Aromatic van der Waals Clusters: Structure and Nonrigidity
    • Sun, S.; Bernstein, E. Aromatic van der Waals Clusters: Structure and Nonrigidity J. Phys. Chem. 1996, 100, 13348-13366
    • (1996) J. Phys. Chem. , vol.100 , pp. 13348-13366
    • Sun, S.1    Bernstein, E.2
  • 54
    • 80455164836 scopus 로고    scopus 로고
    • Carbon Nanotube Inhibits the Formation of β-Sheet-Rich Oligomers of the Alzheimer's Amyloid-β(16-22) Peptide
    • Li, H.; Luo, Y.; Derreumaux, P.; Wei, G. Carbon Nanotube Inhibits the Formation of β-Sheet-Rich Oligomers of the Alzheimer's Amyloid-β(16- 22) Peptide Biophys. J. 2011, 101, 2267-2276
    • (2011) Biophys. J. , vol.101 , pp. 2267-2276
    • Li, H.1    Luo, Y.2    Derreumaux, P.3    Wei, G.4
  • 55
    • 61949475048 scopus 로고    scopus 로고
    • Influence of Preformed Asp23-Lys28 Salt Bridge on the Conformational Fluctuations of Monomers and Dimers of Aβ Peptides with Implications for Rates of Fibril Formation
    • Reddy, G.; Straub, J. E.; Thirumalai, D. Influence of Preformed Asp23-Lys28 Salt Bridge on the Conformational Fluctuations of Monomers and Dimers of Aβ Peptides with Implications for Rates of Fibril Formation J. Phys. Chem. B 2009, 113, 1162-1172
    • (2009) J. Phys. Chem. B , vol.113 , pp. 1162-1172
    • Reddy, G.1    Straub, J.E.2    Thirumalai, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.