Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose

Biotechnology for Biofuels

Volumn 7, Issue 1, 2014, Pages

  Chomvong, Kulika ^a   Kordić, Vesna ^b   Li, Xin ^b   Bauer, Stefan ^b   Gillespie, Abigail E ^b   Ha, Suk Jin ^c,d   Oh, Eun Joong ^c   Galazka, Jonathan M ^b   Jin, Yong Su ^c   Cate, Jamie H D ^b,e  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^d Kangwon National University   (South Korea)

^e LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

Cellobiose; Cellobiose phosphorylase; Glucopyranosyl xylose; Inhibition; Xylose

Indexed keywords

BIOFUELS; ENZYME ACTIVITY; ENZYME INHIBITION; FERMENTATION; GLUCOSE; PHOSPHORYLATION; YEAST;

ANAEROBIC CONDITIONS; BY-PRODUCT FORMATION; CELLOBIOSE; CELLOBIOSE PHOSPHORYLASE; GLUCOPYRANOSYL-XYLOSE; GLUCOSE 1-PHOSPHATE; INTRACELLULAR ENZYME; SUBSTRATE SPECIFICITY;

XYLOSE;

BACTERIUM; BIOASSAY; BIOFUEL; EXPERIMENTAL DESIGN; FERMENTATION; INHIBITION; PHOSPHATE; SUBSTRATE;

SACCHAROMYCES CEREVISIAE;

EID: 84902871353     PISSN: 17546834     EISSN: None     Source Type: Journal    
DOI: 10.1186/1754-6834-7-85     Document Type: Article

References (35)

1. Cellulosic biofuels. Carroll A, Somerville C, Annu Rev Plant Biol 2009 60 165 182 10.1146/annurev.arplant.043008.092125 19014348
2. Xylose fermentation-an economic analysis. Hinman ND, Wright JD, Hoagland W, Wyman CE, Appl Biochem Biotechnol 1989 20/21 391 401 10.1007/BF02936498
3. A review of the production of ethanol from softwood. Galbe M, Zacchi G, Appl Microbiol Biotechnol 2002 59 618 628 10.1007/s00253-002-1058-9 12226717
4. Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation. Ha SJ, Galazka JM, Kim SR, Choi JH, Yang X, Seo JH, Glass NL, Cate JH, Jin YS, Proc Natl Acad Sci U S A 2011 108 504 509 10.1073/pnas.1010456108 21187422
5. Overcoming glucose repression in mixed sugar fermentation by co-expressing a cellobiose transporter and a beta-glucosidase in Saccharomyces cerevisiae. Li S, Du J, Sun J, Galazka JM, Glass NL, Cate JH, Yang X, Zhao H, Mol Biosyst 2010 6 2129 2132 10.1039/c0mb00063a 20871937
6. Cellodextrin transport in yeast for improved biofuel production. Galazka JM, Tian C, Beeson WT, Martinez B, Glass NL, Cate JH, Science 2010 330 84 86 10.1126/science.1192838 20829451
7. Construction of xylose-assimilating Saccharomyces cerevisiae. Tantirungkij M, Nakashima N, Seki T, Yoshida T, J Ferm Bioeng 1993 75 83 88 10.1016/0922-338X(93)90214-S
8. Xylose fermentation by Saccharomyces cerevisiae. Kötter P, Ciriacy M, Appl Microbiol Biotechnol 1993 38 776 783 10.1007/BF00167144
9. Minimal metabolic engineering of Saccharomyces cerevisiae for efficient anaerobic xylose fermentation: a proof of principle. Kuyper M, Winkler AA, van Dijken JP, Pronk JT, FEMS Yeast Res 2004 4 655 664 10.1016/j.femsyr.2004.01.003 15040955
10. Energetic benefits and rapid cellobiose fermentation by Saccharomyces cerevisiae expressing cellobiose phosphorylase and mutant cellodextrin transporters. Ha SJ, Galazka JM, Joong Oh E, Kordic V, Kim H, Jin YS, Cate JH, Metab Eng 2013 15 134 143 23178501
11. Role of phosphorolytic cleavage in cellobiose and cellodextrin metabolism by the ruminal bacterium Prevotella ruminicola. Lou J, Dawson KA, Strobel HJ, Appl Environ Microbiol 1996 62 1770 1773 8633876
12. Characteristics of cellobiose phosphorylase. Alexander JK, J Bacteriol 1961 81 903 910 13682344
13. Thermodynamics of hexokinase-catalyzed reactions. Goldberg RN, Biophys Chem 1975 3 192 205 10.1016/0301-4622(75)80011-1 240453
14. Improvement of galactose uptake in Saccharomyces cerevisiae through overexpression of phosphoglucomutase: example of transcript analysis as a tool in inverse metabolic engineering. Bro C, Knudsen S, Regenberg B, Olsson L, Nielsen J, Appl Environ Microbiol 2005 71 6465 6472 10.1128/AEM.71.11.6465-6472. 2005 16269670
15. Energy coupling in Saccharomyces cerevisiae: selected opportunities for metabolic engineering. de Kok S, Kozak BU, Pronk JT, van Maris AJ, FEMS Yeast Res 2012 12 387 397 10.1111/j.1567-1364.2012.00799.x 22404754
16. Co-fermentation of xylose and cellobiose by an engineered Saccharomyces cerevisiae. Aeling KA, Salmon KA, Laplaza JM, Li L, Headman JR, Hutagalung AH, Picataggio S, J Ind Microbiol Biotechnol 2012 39 1597 1604 10.1007/s10295-012- 1169-y 22911235
17. Improved cellobiose utilization in E. coli by including both hydrolysis and phosphorolysis mechanisms. Rutter C, Chen R, Biotechnol Lett 2014 36 301 307 10.1007/s10529-013-1355-7 24101240
18. Enzymatic characteristics of cellobiose phosphorylase from Ruminococcus albus NE1 and kinetic mechanism of unusual substrate inhibition in reverse phosphorolysis. Hamura K, Saburi W, Abe S, Morimoto N, Taguchi H, Mori H, Matsui H, Biosci Biotechnol Biochem 2012 76 812 818 10.1271/bbb.110954 22484959
19. A dominant mutation that alters the regulation of INO1 expression in Saccharomyces cerevisiae. Hosaka K, Nikawa J, Kodaki T, Yamashita S, J Biochem 1992 111 352 358 1587797
20. Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. Kim SR, Skerker JM, Kang W, Lesmana A, Wei N, Arkin AP, Jin YS, PLoS One 2013 8 57048 10.1371/journal.pone.0057048 23468911
21. Deletion of the GRE3 aldose reductase gene and its influence on xylose metabolism in recombinant strains of Saccharomyces cerevisiae expressing the xylA and XKS1 genes. Traff KL, Otero Cordero RR, van Zyl WH, Hahn-Hagerdal B, Appl Environ Microbiol 2001 67 5668 5674 10.1128/AEM.67.12.5668-5674.2001 11722921
22. Analysis of cellodextrin transporters from Neurospora crassa in Saccharomyces cerevisiae for cellobiose fermentation. Kim H, Lee WH, Galazka JM, Cate JH, Jin YS, Appl Microbiol Biotechnol 2014 98 1087 1094 10.1007/s00253-013-5339-2 24190499
23. Characterization of the xylose-transporting properties of yeast hexose transporters and their influence on xylose utilization. Hamacher T, Becker J, Gardonyi M, Hahn-Hagerdal B, Boles E, Microbiology 2002 148 2783 2788 12213924
24. Function and regulation of yeast hexose transporters. Ozcan S, Johnston M, Microbiol Mol Biol Rev MMBR 1999 63 554 569
25. Intracellular glucose concentration in derepressed yeast cells consuming glucose is high enough to reduce the glucose transport rate by 50%. Teusink B, Diderich JA, Westerhoff HV, van Dam K, Walsh MC, J Bacteriol 1998 180 556 562 9457857
26. Production of glucosyl-xylose using cellvibrio-gilvus cells and its properties. Kitaoka M, Taniguchi H, Sasaki T, Appl Microbiol Biotechnol 1990 34 178 182 10.1007/BF00166776
27. Purification and properties of laminaribiose phosphorylase (EC 2.4 1.31) from Euglena gracilis Z. Kitaoka M, Sasaki T, Taniguchi H, Arch Biochem Biophys 1993 304 508 514 10.1006/abbi.1993.1383 8346926
28. Structure of cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate. Bianchetti CM, Elsen NL, Fox BG, Phillips GN Jr, Acta Crystallogr Sect F Struct Biol Cryst Commun 2011 67 1345 1349 10.1107/S1744309111032660 22102229
29. Crystallization and X-ray diffraction studies of cellobiose phosphorylase from Cellulomonas uda. Van Hoorebeke A, Stout J, Kyndt J, De Groeve M, Dix I, Desmet T, Soetaert W, van Beeumen J, Savvides SN, Acta Crystallogr Sect F Struct Biol Cryst Commun 2010 66 346 351 10.1107/S1744309110002642 20208178
30. Altering protein specificity: techniques and applications. Antikainen NM, Martin SF, Bioorg Med Chem 2005 13 2701 2716 10.1016/j.bmc.2005.01.059 15781382
31. Structure-based mutagenesis approaches toward expanding the substrate specificity of D-2-deoxyribose-5-phosphate aldolase. DeSantis G, Liu J, Clark DP, Heine A, Wilson IA, Wong CH, Bioorg Med Chem 2003 11 43 52 10.1016/S0968-0896(02)00429-7 12467706
32. Redesign of choline acetyltransferase specificity by protein engineering. Cronin CN, J Biol Chem 1998 273 24465 24469 10.1074/jbc.273.38.24465 9733738
33. PCR-based strategy for construction of multi-site-saturation mutagenic expression library. Wang JX, Zhang SF, Tan HD, Zhao ZB, J Microbiol Meth 2007 71 225 230 10.1016/j.mimet.2007.09.001
34. Semi-rational approaches to engineering enzyme activity: combining the benefits of directed evolution and rational design. Chica RA, Doucet N, Pelletier JN, Curr Opin Biotech 2005 16 378 384 10.1016/j.copbio.2005.06.004 15994074
35. Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Gietz RD, Woods RA, Methods Enzymol 2002 350 87 96 12073338