-
1
-
-
77951439152
-
Trait-associated SNPs are more likely to be eQTLs: Annotation to enhance discovery from GWAS
-
Nicolae DL, Gamazon E, Zhang W, Duan S, Dolan ED, et al. (2010) Trait-associated SNPs are more likely to be eQTLs: Annotation to enhance discovery from GWAS. PLoS Genetics 6: e1000888.
-
(2010)
PLoS Genetics
, vol.6
-
-
Nicolae, D.L.1
Gamazon, E.2
Zhang, W.3
Duan, S.4
Dolan, E.D.5
-
2
-
-
45149108420
-
Mapping the genetic architecture of gene expression in human liver
-
Schadt E, Molony C, Chudin E, Hao K, Yang X, et al. (2008) Mapping the genetic architecture of gene expression in human liver. PLoS Biology 6: e107.
-
(2008)
PLoS Biology
, vol.6
-
-
Schadt, E.1
Molony, C.2
Chudin, E.3
Hao, K.4
Yang, X.5
-
3
-
-
58149347486
-
Genome-wide association studies: Potential next steps on a genetic journey
-
McCarthy MI, Hirschorn JN (2008) Genome-wide association studies: potential next steps on a genetic journey. Hum Mol Genet 17: R156-R165.
-
(2008)
Hum Mol Genet
, vol.17
-
-
McCarthy, M.I.1
Hirschorn, J.N.2
-
4
-
-
47249142778
-
Revealing the architecture of gene regulation: The promise of eQTL studies
-
Gilad Y, Rifkin SA, Pritchard JK (2008) Revealing the architecture of gene regulation: the promise of eQTL studies. Treds Genet 24: 408-415.
-
(2008)
Treds Genet
, vol.24
, pp. 408-415
-
-
Gilad, Y.1
Rifkin, S.A.2
Pritchard, J.K.3
-
5
-
-
60349092402
-
Mapping complex disease traits with global gene expression
-
Cookson W, Liang L, Abecasis G, Moffatt M, Lathrop M (2009) Mapping complex disease traits with global gene expression. Nature Reviews Genetics 10: 184-194.
-
(2009)
Nature Reviews Genetics
, vol.10
, pp. 184-194
-
-
Cookson, W.1
Liang, L.2
Abecasis, G.3
Moffatt, M.4
Lathrop, M.5
-
6
-
-
77954157408
-
An integration of genomewide association study and gene expression profiling to prioritize the discovery of novel susceptibility loci for osteoporosis-related traits
-
Hsu Y, Zillikens MC, Wilson SG, Farber CR, Demissie S, et al. (2010) An integration of genomewide association study and gene expression profiling to prioritize the discovery of novel susceptibility loci for osteoporosis-related traits. PLoS Genetics 6: e1000977.
-
(2010)
PLoS Genetics
, vol.6
-
-
Hsu, Y.1
Zillikens, M.C.2
Wilson, S.G.3
Farber, C.R.4
Demissie, S.5
-
7
-
-
77950542695
-
Convergence of linkage, gene expression and association data demonstrates the inuence of the rar-related orphan receptor alpha (RORA) gene on neovascular AMD: A systems biology based approach
-
Silveira AC, Morrison MA, Ji F, Xu H, Reinecke JB, et al. (2010) Convergence of linkage, gene expression and association data demonstrates the inuence of the rar-related orphan receptor alpha (RORA) gene on neovascular AMD: A systems biology based approach. Vision Research 50: 698-715.
-
(2010)
Vision Research
, vol.50
, pp. 698-715
-
-
Silveira, A.C.1
Morrison, M.A.2
Ji, F.3
Xu, H.4
Reinecke, J.B.5
-
8
-
-
40749105508
-
Variations in DNA elucidate molecular networks that cause disease
-
DOI 10.1038/nature06757, PII NATURE06757
-
Chen Y, Zhu J, Lum PY, Yang X, Pinto S, et al. (2008) Variations in DNA elucidate molecular networks that cause disease. Nature 452: 429-435. (Pubitemid 351450844)
-
(2008)
Nature
, vol.452
, Issue.7186
, pp. 429-435
-
-
Chen, Y.1
Zhu, J.2
Lum, P.Y.3
Yang, X.4
Pinto, S.5
MacNeil, D.J.6
Zhang, C.7
Lamb, J.8
Edwards, S.9
Sieberts, S.K.10
Leonardson, A.11
Castellini, L.W.12
Wang, S.13
Champy, M.-F.14
Zhang, B.15
Emilsson, V.16
Doss, S.17
Ghazalpour, A.18
Horvath, S.19
Drake, T.A.20
Lusis, A.J.21
Schadt, E.E.22
more..
-
10
-
-
34548292504
-
PLINK: A tool set for whole-genome association and population-based linkage analyses
-
DOI 10.1086/519795
-
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira M, et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. The American Journal of Human Genetics 81: 559-575. (Pubitemid 47330214)
-
(2007)
American Journal of Human Genetics
, vol.81
, Issue.3
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.R.5
Bender, D.6
Maller, J.7
Sklar, P.8
De Bakker, P.I.W.9
Daly, M.J.10
Sham, P.C.11
-
11
-
-
77958522275
-
A genome-wide association study of red blood cell traits using the electronic medical record
-
Kullo IJ, Ding K, Jouni H, Smith CY, Chute CG (2010) A genome-wide association study of red blood cell traits using the electronic medical record. PLoS One 5: e13011.
-
(2010)
PLoS One
, vol.5
-
-
Kullo, I.J.1
Ding, K.2
Jouni, H.3
Smith, C.Y.4
Chute, C.G.5
-
12
-
-
41349095280
-
Genetics of gene expression and its effect on disease
-
DOI 10.1038/nature06758, PII NATURE06758
-
Emilsson V, Thorleifsson G, Zhang B, Leonardson AS, Zink F (2008) Genetics of gene expression and its effect on disease. Nature 452: 423-8. (Pubitemid 351450845)
-
(2008)
Nature
, vol.452
, Issue.7186
, pp. 423-428
-
-
Emilsson, V.1
Thorleifsson, G.2
Zhang, B.3
Leonardson, A.S.4
Zink, F.5
Zhu, J.6
Carlson, S.7
Helgason, A.8
Walters, G.B.9
Gunnarsdottir, S.10
Mouy, M.11
Steinthorsdottir, V.12
Eiriksdottir, G.H.13
Bjornsdottir, G.14
Reynisdottir, I.15
Gudbjartsson, D.16
Helgadottir, A.17
Jonasdottir, A.18
Jonasdottir, A.19
Styrkarsdottir, U.20
Gretarsdottir, S.21
Magnusson, K.P.22
Stefansson, H.23
Fossdal, R.24
Kristjansson, K.25
Gislason, H.G.26
Stefansson, T.27
Leifsson, B.G.28
Thorsteinsdottir, U.29
Lamb, J.R.30
Gulcher, J.R.31
Reitman, M.L.32
Kong, A.33
Schadt, E.E.34
Stefansson, K.35
more..
-
13
-
-
35349024501
-
Network modeling links breast cancer susceptibility and centrosome dysfunction
-
DOI 10.1038/ng.2007.2, PII NG20072
-
Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, et al. (2007) Network modeling links breast cancer susceptibility and centrosome dysfunction. Nature Genetics 39: 1338-49. (Pubitemid 350035000)
-
(2007)
Nature Genetics
, vol.39
, Issue.11
, pp. 1338-1349
-
-
Pujana, M.A.1
Han, J.-D.J.2
Starita, L.M.3
Stevens, K.N.4
Tewari, M.5
Ahn, J.S.6
Rennert, G.7
Moreno, V.8
Kirchhoff, T.9
Gold, B.10
Assmann, V.11
Elshamy, W.M.12
Rual, J.-F.13
Levine, D.14
Rozek, L.S.15
Gelman, R.S.16
Gunsalus, K.C.17
Greenberg, R.A.18
Sobhian, B.19
Bertin, N.20
Venkatesan, K.21
Ayivi-Guedehoussou, N.22
Sole, X.23
Hernandez, P.24
Lazaro, C.25
Nathanson, K.L.26
Weber, B.L.27
Cusick, M.E.28
Hill, D.E.29
Offit, K.30
Livingston, D.M.31
Gruber, S.B.32
Parvin, J.D.33
Vidal, M.34
more..
-
14
-
-
70349956433
-
Finding the missing heritability of complex diseases
-
Manolio T, Collins F, Cox N, Goldstein D, Hindorff L, et al. (2009) Finding the missing heritability of complex diseases. Nature 461: 747-753.
-
(2009)
Nature
, vol.461
, pp. 747-753
-
-
Manolio, T.1
Collins, F.2
Cox, N.3
Goldstein, D.4
Hindorff, L.5
-
15
-
-
58049217860
-
-
Available: http: Accessed 2014 Apr 27
-
Hindorff LA, MacArthur J, Morales J, Junkins HA, Hall PN, et al. (2011) A catalog of published genome-wide association studies. Available: http: www.genome.gov/gwastudies. Accessed 2014 Apr 27.
-
(2011)
A Catalog of Published Genome-wide Association Studies
-
-
Hindorff, L.A.1
MacArthur, J.2
Morales, J.3
Junkins, H.A.4
Hall, P.N.5
-
16
-
-
77952822074
-
Phewas: Demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations
-
Denny JC, Ritchie MD, Basford MA, Pulley JM, Bastarache L, et al. (2010) Phewas: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations. Bioinformatics 26: 1205-1210.
-
(2010)
Bioinformatics
, vol.26
, pp. 1205-1210
-
-
Denny, J.C.1
Ritchie, M.D.2
Basford, M.A.3
Pulley, J.M.4
Bastarache, L.5
-
17
-
-
62549115747
-
Genome-wide association analysis by lasso penalized logistic regression
-
Wu T, Chen Y, Hastie T, Sobel E, Lange K (2009) Genome-wide association analysis by lasso penalized logistic regression. Bioinformatics 25: 714-721.
-
(2009)
Bioinformatics
, vol.25
, pp. 714-721
-
-
Wu, T.1
Chen, Y.2
Hastie, T.3
Sobel, E.4
Lange, K.5
-
18
-
-
70349540906
-
Identification of a new prostate cancer susceptibility locus on chromosome 8q24
-
Yeager M, Chatterjee N, Ciampa J, Jacobs KB, Gonzalez-Bosquet J, et al. (2009) Identification of a new prostate cancer susceptibility locus on chromosome 8q24. Nature Genetics 41: 1055-1057.
-
(2009)
Nature Genetics
, vol.41
, pp. 1055-1057
-
-
Yeager, M.1
Chatterjee, N.2
Ciampa, J.3
Jacobs, K.B.4
Gonzalez-Bosquet, J.5
-
19
-
-
16244378266
-
Identification of candidate genes in the type 2 diabetes modifier locus using expression QTL
-
DOI 10.1016/j.ygeno.2005.01.006
-
Yaguchi H, Togawa K, Moritani M, Itakura M (2005) Identification of candidate genes in the type 2 diabetes modifier locus using expression QTL. Genomics 85: 591-599. (Pubitemid 40463695)
-
(2005)
Genomics
, vol.85
, Issue.5
, pp. 591-599
-
-
Yaguchi, H.1
Togawa, K.2
Moritani, M.3
Itakura, M.4
-
20
-
-
40849093600
-
Genome-wide association studies in Alzheimer disease
-
DOI 10.1001/archneur.65.3.329
-
Waring SC, Rosenberg RN (2008) Genome-wide association studies in Alzheimer Disease. Arch Neurol 65: 329-334. (Pubitemid 351409357)
-
(2008)
Archives of Neurology
, vol.65
, Issue.3
, pp. 329-334
-
-
Waring, S.C.1
Rosenberg, R.N.2
-
21
-
-
70249134919
-
Molecular networks as sensors and drivers of common human diseases
-
Schadt EE (2009) Molecular networks as sensors and drivers of common human diseases. Nature 461: 218-223.
-
(2009)
Nature
, vol.461
, pp. 218-223
-
-
Schadt, E.E.1
-
22
-
-
70149098541
-
Statistical estimation of correlated genome associations to a quantitative trait network
-
Kim S, Xing E (2009) Statistical estimation of correlated genome associations to a quantitative trait network. PLoS genetics 5: e1000587.
-
(2009)
PLoS Genetics
, vol.5
-
-
Kim, S.1
Xing, E.2
-
23
-
-
77954194620
-
Multi-population GWA mapping via multitask regularized regression
-
Puniyani K, Kim S, Xing EP (2010) Multi-population GWA mapping via multitask regularized regression. Bioinformatics 26: i208-216.
-
(2010)
Bioinformatics
, vol.26
-
-
Puniyani, K.1
Kim, S.2
Xing, E.P.3
-
24
-
-
61449224751
-
A resource for the simultaneous high-resolution mapping of multiple quantitative trait loci in rats: The nih heterogeneous stock
-
Johannesson M, Lopez-Aumatell R, Diez M, Tuncel J, Blazquez G, et al. (2008) A resource for the simultaneous high-resolution mapping of multiple quantitative trait loci in rats: The nih heterogeneous stock. Genome Res 19: 150-158.
-
(2008)
Genome Res
, vol.19
, pp. 150-158
-
-
Johannesson, M.1
Lopez-Aumatell, R.2
Diez, M.3
Tuncel, J.4
Blazquez, G.5
-
25
-
-
0003878575
-
-
London - New York: Chapman & Hall, 4 edition
-
Lindgren BW (1993) Statistical Theory. London - New York: Chapman & Hall, 633p, 4 edition.
-
(1993)
Statistical Theory
, pp. 633
-
-
Lindgren, B.W.1
-
28
-
-
37249080278
-
Penalized logistic regression for detecting gene interactions
-
DOI 10.1093/biostatistics/kxm010
-
Park MY, Hastie T (2008) Penalized logistic regression for detecting gene interactions. Biostatistics 9: 30-50. (Pubitemid 350274580)
-
(2008)
Biostatistics
, vol.9
, Issue.1
, pp. 30-50
-
-
Park, M.Y.1
Hastie, T.2
-
29
-
-
0028899938
-
A nonparametric approach for mapping quantitative trait loci
-
Kruglyak L, Lander ES (1995) A nonparametric approach for mapping quantitative trait loci. Genetics 139: 1421-1428.
-
(1995)
Genetics
, vol.139
, pp. 1421-1428
-
-
Kruglyak, L.1
Lander, E.S.2
-
30
-
-
84863505275
-
Leveraging input and output structures for joint mapping of epistatic and marginal eQTLs
-
Lee S, Xing E (2012) Leveraging input and output structures for joint mapping of epistatic and marginal eQTLs. Bioinformatics 28: i137-i146.
-
(2012)
Bioinformatics
, vol.28
-
-
Lee, S.1
Xing, E.2
-
34
-
-
84891376664
-
Finding genome-transcriptomephenome association with structured association mapping and visualization in Genamap
-
Curtis R, Yin J, Kinnaird P, Xing E (2012) Finding genome- transcriptomephenome association with structured association mapping and visualization in Genamap. In: Pacific Symposium on Biocomputing (PSB); 3-7 January 2012; Kohala Coast, Hawaii, USA. 327-38.
-
(2012)
Pacific Symposium on Biocomputing (PSB); 3-7 January 2012; Kohala Coast, Hawaii, USA
, pp. 327-338
-
-
Curtis, R.1
Yin, J.2
Kinnaird, P.3
Xing, E.4
-
37
-
-
46749146509
-
A coordinate gradient descent method for nonsmooth separable minimization
-
Tseng P, Yun S (2009) A coordinate gradient descent method for nonsmooth separable minimization. Math Program 117: 387-423.
-
(2009)
Math Program
, vol.117
, pp. 387-423
-
-
Tseng, P.1
Yun, S.2
-
38
-
-
80053139009
-
Smoothing proximal gradient method for general structured sparse learning
-
Chen X, Lin Q, Kim S, Carbonell J, Xing E (2011) Smoothing proximal gradient method for general structured sparse learning. In: Proceedings of Uncertainty in Artificial Intelligence (UAI); 15-17 August 2012; Catalina Island, CA, USA. 105-114.
-
(2011)
Proceedings of Uncertainty in Artificial Intelligence (UAI); 15-17 August 2012; Catalina Island, CA, USA
, pp. 105-114
-
-
Chen, X.1
Lin, Q.2
Kim, S.3
Carbonell, J.4
Xing, E.5
-
39
-
-
80051762104
-
Distributed optimization and statistical learning via the alternating direction method of multipliers
-
Boyd S, Parikh N, Chu E, Peleato B, Eckstein J (2011) Distributed optimization and statistical learning via the alternating direction method of multipliers. Found Trends Mach Learn 3: 1-122.
-
(2011)
Found Trends Mach Learn
, vol.3
, pp. 1-122
-
-
Boyd, S.1
Parikh, N.2
Chu, E.3
Peleato, B.4
Eckstein, J.5
-
40
-
-
85014561619
-
A fast iterative shrinkage-thresholding algorithm for linear inverse problems
-
Beck A, Teboulle M (2009) A fast iterative shrinkage-thresholding algorithm for linear inverse problems. SIAM Journal on Imaging Sciences 2: 183-202.
-
(2009)
SIAM Journal on Imaging Sciences
, vol.2
, pp. 183-202
-
-
Beck, A.1
Teboulle, M.2
-
41
-
-
17444406259
-
Smooth minimization of non-smooth functions
-
Nesterov Y (2005) Smooth minimization of non-smooth functions. Mathematical Programming 103: 127-152.
-
(2005)
Mathematical Programming
, vol.103
, pp. 127-152
-
-
Nesterov, Y.1
-
43
-
-
70349600872
-
Dual augmented lagrangian method for efficient sparse reconstruction
-
Tomioka R, Sugiyama M (2009) Dual augmented lagrangian method for efficient sparse reconstruction. IEEE Signal Proccesing Letters 16: 1067-1070.
-
(2009)
IEEE Signal Proccesing Letters
, vol.16
, pp. 1067-1070
-
-
Tomioka, R.1
Sugiyama, M.2
-
45
-
-
69049091975
-
High dimensional variable selection
-
Wasserman L, Roeder K (2009) High dimensional variable selection. Annals of statistics 37: 2178-2201.
-
(2009)
Annals of Statistics
, vol.37
, pp. 2178-2201
-
-
Wasserman, L.1
Roeder, K.2
-
46
-
-
77949865384
-
Screen and clean: A tool for identifying interactions in genome-wide association studies
-
Wu J, Devlin B, Ringquist S, Trucco M, Roeder K (2010) Screen and clean: a tool for identifying interactions in genome-wide association studies. Genetic epidemiology 34: 275-285.
-
(2010)
Genetic Epidemiology
, vol.34
, pp. 275-285
-
-
Wu, J.1
Devlin, B.2
Ringquist, S.3
Trucco, M.4
Roeder, K.5
-
47
-
-
84859185929
-
Enhancing the usability and performance of structured association mapping algorithms using automation, parallelization, and visualization in the GenAMap software system
-
Curtis RE, Goyal A, Xing EP (2012) Enhancing the usability and performance of structured association mapping algorithms using automation, parallelization, and visualization in the GenAMap software system. BMC genetics 13: 24+.
-
(2012)
BMC Genetics
, vol.13
, pp. 24
-
-
Curtis, R.E.1
Goyal, A.2
Xing, E.P.3
-
48
-
-
84863304598
-
-
R Development Core Team R Foundation for Statistical Computing, Vienna, Austria
-
R Development Core Team (2009) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2009)
R: A Language and Environment for Statistical Computing
-
-
-
49
-
-
45849134070
-
Sparse inverse covariance estimation with the graphical lasso
-
Friedman J, Hastie T, Tibshirani R (2008) Sparse inverse covariance estimation with the graphical lasso. Biostatistics 9: 432.
-
(2008)
Biostatistics
, vol.9
, pp. 432
-
-
Friedman, J.1
Hastie, T.2
Tibshirani, R.3
-
50
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome biology 5: R80+.
-
(2004)
Genome Biology
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
-
51
-
-
50549096133
-
The value of information visualization
-
Kerren A, Stasko JT, Fekete JD, North C, editors, Berlin/Heidelberg: Springer
-
Fekete JD, van Wijk J, Stasko J, North C (2008) The value of information visualization. In: Kerren A, Stasko JT, Fekete JD, North C, editors, Information Visualization, Berlin/Heidelberg: Springer, volume 4950. 1-18.
-
(2008)
Information Visualization
, vol.4950
, pp. 1-18
-
-
Fekete, J.D.1
Van Wijk, J.2
Stasko, J.3
North, C.4
-
53
-
-
0242490780
-
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
-
DOI 10.1101/gr.1239303
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Research 13: 2498-2504. (Pubitemid 37428274)
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
54
-
-
70350664649
-
De novo transcriptome assembly with ABySS
-
Birol I, Jackman SD, Nielsen CB, Qian JQ, Varhol R, et al. (2009) De novo transcriptome assembly with ABySS. Bioinformatics 25: 2872-2877.
-
(2009)
Bioinformatics
, vol.25
, pp. 2872-2877
-
-
Birol, I.1
Jackman, S.D.2
Nielsen, C.B.3
Qian, J.Q.4
Varhol, R.5
-
56
-
-
77956586071
-
LocusZoom: Regional visualization of genome-wide association scan results
-
Pruim RJ, Welch RP, Sanna S, Teslovich TM, Chines PS, et al. (2010) LocusZoom: regional visualization of genome-wide association scan results. Bioinformatics 26: 2336-2337.
-
(2010)
Bioinformatics
, vol.26
, pp. 2336-2337
-
-
Pruim, R.J.1
Welch, R.P.2
Sanna, S.3
Teslovich, T.M.4
Chines, P.S.5
-
57
-
-
41649083448
-
WGA Viewer: Software for genomic annotation of whole genome association studies
-
DOI 10.1101/gr.071571.107
-
Ge D, Zhang K, Need AC, Martin O, Fellay J, et al. (2008) WGAViewer: Software for genomic annotation of whole genome association studies. Genome Research 18: 640-643. (Pubitemid 351482788)
-
(2008)
Genome Research
, vol.18
, Issue.4
, pp. 640-643
-
-
Ge, D.1
Zhang, K.2
Need, A.C.3
Martin, O.4
Fellay, J.5
Urban, T.J.6
Telenti, A.7
Goldstein, D.B.8
-
59
-
-
33847243488
-
Analysis and visualization of network data using JUNG
-
Madahain JO, Fisher D, Smyth P, White S, Boey YB (2005) Analysis and visualization of network data using JUNG. Journal of Statistical Software 10: 1-35.
-
(2005)
Journal of Statistical Software
, vol.10
, pp. 1-35
-
-
Madahain, J.O.1
Fisher, D.2
Smyth, P.3
White, S.4
Boey, Y.B.5
-
60
-
-
84902591200
-
-
Available: Accessed 2014 Apr 27
-
Castle T (2009). Jheatchart. Available: http://freshmeat.net/projects/ jheatchart. Accessed 2014 Apr 27.
-
(2009)
Jheatchart
-
-
Castle, T.1
-
61
-
-
84855600585
-
-
Available: Accessed 2014 Apr 27
-
Gilbert D (2010). Jfreechart open source library. Available: http://www.jfree.org/jfreechart/index.html. Accessed 2014 Apr 27.
-
(2010)
Jfreechart Open Source Library
-
-
Gilbert, D.1
-
62
-
-
14244258507
-
Distributed computing in practice: The Condor experience
-
DOI 10.1002/cpe.938, Grid Performance and Grids and Web Services for E-Science
-
Thain D, Tannenbaum T, Livny M (2005) Distributed computing in practice: the condor experience. Concurrency and Computation: Practice and Experience 17: 323-356. (Pubitemid 40285781)
-
(2005)
Concurrency Computation Practice and Experience
, vol.17
, Issue.2-4
, pp. 323-356
-
-
Thain, D.1
Tannenbaum, T.2
Livny, M.3
-
63
-
-
13444306165
-
The landscape of genetic complexity across 5,700 gene expression traits in yeast
-
Brem R, Kruglyak L (2005) The landscape of genetic complexity across 5,700 gene expression traits in yeast. PNAS 102: 1572.
-
(2005)
PNAS
, vol.102
, pp. 1572
-
-
Brem, R.1
Kruglyak, L.2
-
64
-
-
45149106353
-
Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks
-
Zhu J, Zhang B, Smith E, Drees B, Brem R, et al. (2008) Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. Nature Genetics 40: 854.
-
(2008)
Nature Genetics
, vol.40
, pp. 854
-
-
Zhu, J.1
Zhang, B.2
Smith, E.3
Drees, B.4
Brem, R.5
-
65
-
-
0042856391
-
Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors
-
Yvert G, Brem RB, Whittle J, Akey JM, Foss E, et al. (2003) Trans-acting regulatory variation in saccharomyces cerevisiae and the role of transcription factors. Nature Genetics 35: 57-64. (Pubitemid 37048596)
-
(2003)
Nature Genetics
, vol.35
, Issue.1
, pp. 57-64
-
-
Yvert, G.1
Brem, R.B.2
Whittle, J.3
Akey, J.M.4
Foss, E.5
Smith, E.N.6
Mackelprang, R.7
Kruglyak, L.8
-
66
-
-
59249086642
-
Learning a prior on regulatory potential from eQTL data
-
Lee S, Dudley A, Drubin D, Silver P, Krogan N, et al. (2009) Learning a prior on regulatory potential from eQTL data. PLoS Genetics 5: e1000358.
-
(2009)
PLoS Genetics
, vol.5
-
-
Lee, S.1
Dudley, A.2
Drubin, D.3
Silver, P.4
Krogan, N.5
-
67
-
-
84886754385
-
-
Available: http://yeastgenome.org. Accessed 2014 Apr 27
-
The saccaromyces genome database. Available: http://yeastgenome.org. Accessed 2014 Apr 27.
-
The Saccaromyces Genome Database
-
-
-
68
-
-
80054123822
-
-
Available: Accessed 2014 Apr 27
-
dbSNP - short genetic variations. Available: http://www.ncbi.nlm.nih.gov/ SNP/. Accessed 2014 Apr 27.
-
DbSNP - Short Genetic Variations
-
-
-
70
-
-
24044440971
-
BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
-
DOI 10.1093/bioinformatics/bti551
-
Maere S, Heymans K, Kuiper M (2005) Bingo: a cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 21: 3448-3449. (Pubitemid 41222459)
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
72
-
-
78651319979
-
Ongoing and future developments at the universal protein resource
-
Consortium TU
-
Consortium TU (2011) Ongoing and future developments at the universal protein resource. Nucleic acids research 39: D214-D219.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
-
73
-
-
84902594607
-
-
website. Available: Accessed 2014 Apr 27
-
Genamap website. Available: http://sailing.cs.cmu.edu/genamap/. Accessed 2014 Apr 27.
-
Genamap
-
-
-
74
-
-
33746540478
-
Genome-wide genetic association of complex traits in heterogeneous stock mice
-
DOI 10.1038/ng1840, PII NG1840
-
Valdar W, Solberg LC, Gauguier D, Burnett S, Klenerman P, et al. (2006) Genome-wide genetic association of complex traits in heterogeneous stock mice. Nature Genetics 38: 879-887. (Pubitemid 44141655)
-
(2006)
Nature Genetics
, vol.38
, Issue.8
, pp. 879-887
-
-
Valdar, W.1
Solberg, L.C.2
Gauguier, D.3
Burnett, S.4
Klenerman, P.5
Cookson, W.O.6
Taylor, M.S.7
Rawlins, J.N.P.8
Mott, R.9
Flint, J.10
-
75
-
-
66449134529
-
High resolution mapping of expression QTLs in heterogeneous stock mice in multiple tissues
-
Huang GJ, Shifman S, Valdar W, Johannesson M, Yalcin B, et al. (2009) High resolution mapping of expression QTLs in heterogeneous stock mice in multiple tissues. Genome research 19: 1133-1140.
-
(2009)
Genome Research
, vol.19
, pp. 1133-1140
-
-
Huang, G.J.1
Shifman, S.2
Valdar, W.3
Johannesson, M.4
Yalcin, B.5
-
76
-
-
46249088370
-
lumi: A pipeline for processing Illumina microarray
-
DOI 10.1093/bioinformatics/btn224
-
Du P, KibbeWA, Lin SM (2008) lumi: a pipeline for processing illumina microarray. Bioinformatics 24: 1547-1548. (Pubitemid 351911712)
-
(2008)
Bioinformatics
, vol.24
, Issue.13
, pp. 1547-1548
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
-
77
-
-
0034960264
-
Missing value estimation methods for DNA microarrays
-
Troyanskaya O, Cantor M, Sherlock G, Brown P, Hastie T, et al. (2001) Missing value estimation methods for DNA microarrays. Bioinformatics 17: 520-525. (Pubitemid 32600498)
-
(2001)
Bioinformatics
, vol.17
, Issue.6
, pp. 520-525
-
-
Troyanskaya, O.1
Cantor, M.2
Sherlock, G.3
Brown, P.4
Hastie, T.5
Tibshirani, R.6
Botstein, D.7
Altman, R.B.8
-
78
-
-
0035173378
-
DbSNP: The NCBI database of genetic variation
-
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, et al. (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Research 29: 308-311. (Pubitemid 32054478)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 308-311
-
-
Sherry, S.T.1
Ward, M.-H.2
Kholodov, M.3
Baker, J.4
Phan, L.5
Smigielski, E.M.6
Sirotkin, K.7
-
79
-
-
78649763600
-
TTF-1 regulates alpha 5 nicotinic acetylcholine receptor (nAChR) subunits in proximal and distal lung epithelium
-
Reynolds P, Allison C, Willnauer C (2010) TTF-1 regulates alpha 5 nicotinic acetylcholine receptor (nAChR) subunits in proximal and distal lung epithelium. Respiratory Research 11: 175+.
-
(2010)
Respiratory Research
, vol.11
, pp. 175
-
-
Reynolds, P.1
Allison, C.2
Willnauer, C.3
-
80
-
-
78651286166
-
The mouse genome database (mgd): Premier model organism resource for mammalian genomics and genetics
-
Blake J, Bult C, Kadin J, Richardson J, Eppig J (2011) The mouse genome database (mgd): premier model organism resource for mammalian genomics and genetics. Nucleic Acids Res 39: D842-8.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Blake, J.1
Bult, C.2
Kadin, J.3
Richardson, J.4
Eppig, J.5
-
81
-
-
84867402556
-
Nuclear depletion of apurinic/apyrimidinic endonuclease 1 (Ape1/Ref-1) is an indicator of energy disruption in neurons
-
Singh S, Englander EW (2012) Nuclear depletion of apurinic/apyrimidinic endonuclease 1 (Ape1/Ref-1) is an indicator of energy disruption in neurons. Free Radical Biology and Medicine 53: 1782-1790.
-
(2012)
Free Radical Biology and Medicine
, vol.53
, pp. 1782-1790
-
-
Singh, S.1
Englander, E.W.2
-
82
-
-
70449356774
-
Quickgo: A web-based tool for gene ontology searching
-
Binns D, Dimmer E, Huntley R, Barrell D, O'Donovan C, et al. (2009) Quickgo: a web-based tool for gene ontology searching. Bioinformatics 25: 3045-6.
-
(2009)
Bioinformatics
, vol.25
, pp. 3045-3046
-
-
Binns, D.1
Dimmer, E.2
Huntley, R.3
Barrell, D.4
O'Donovan, C.5
-
84
-
-
84902594594
-
Population analysis of asthma genome-wide association data using GenAMap
-
Curtis RE, Wenzel S, Myers DA, Bleecker E, Xing EP (2011) Population analysis of asthma genome-wide association data using GenAMap. In: 61st Annual Meeting of the American Society of Human Genetics; 11-15 October 2011; Montreal, Canada.
-
(2011)
61st Annual Meeting of the American Society of Human Genetics; 11-15 October 2011; Montreal, Canada
-
-
Curtis, R.E.1
Wenzel, S.2
Myers, D.A.3
Bleecker, E.4
Xing, E.P.5
-
85
-
-
84867131829
-
Group sparse additive models
-
Langford J, Pineau J, editors
-
Yin J, Chen X, Xing EP (2012) Group sparse additive models. In: Langford J, Pineau J, editors, Proceedings of the 29th International Conference on Machine Learning (ICML-12); 26 June-1 July 2012; Edinburgh, Scotland. 871-878.
-
(2012)
Proceedings of the 29th International Conference on Machine Learning (ICML-12); 26 June-1 July 2012; Edinburgh, Scotland
, pp. 871-878
-
-
Yin, J.1
Chen, X.2
Xing, E.P.3
-
86
-
-
68949216310
-
mStruct: Inference of population structure in light of both genetic admixing and allele mutations
-
Shringarpure S, Xing EP (2009) mStruct: Inference of population structure in light of both genetic admixing and allele mutations. Genetics 182: 575-593.
-
(2009)
Genetics
, vol.182
, pp. 575-593
-
-
Shringarpure, S.1
Xing, E.P.2
-
87
-
-
34547830853
-
Spectrum: Joint bayesian inference of population structure and recombination events
-
Sohn KA, Xing EP (2007) Spectrum: joint bayesian inference of population structure and recombination events. Bioinformatics 23: i479-489.
-
(2007)
Bioinformatics
, vol.23
-
-
Sohn, K.A.1
Xing, E.P.2
-
88
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard J, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-59. (Pubitemid 30397141)
-
(2000)
Genetics
, vol.155
, Issue.2
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
|