메뉴 건너뛰기




Volumn 25, Issue 4, 2014, Pages 342-349

An easy, convenient cell and tissue extraction protocol for nuclear magnetic resonance metabolomics

Author keywords

cells; metabolite extraction; metabolomics; NMR; sample preparation; sonication; tissues

Indexed keywords

BIOMOLECULES; BODY FLUIDS; CELLS; CYTOLOGY; EXTRACTION; HISTOLOGY; METABOLITES; NUCLEAR MAGNETIC RESONANCE; SONICATION;

EID: 84902548728     PISSN: 09580344     EISSN: 10991565     Source Type: Journal    
DOI: 10.1002/pca.2498     Document Type: Article
Times cited : (27)

References (33)
  • 2
    • 84865607215 scopus 로고    scopus 로고
    • Quantitative NMR for bioanalysis and metabolomics. Anal
    • Barding GA, Jr., Salditos R, Larive CK,. 2012. Quantitative NMR for bioanalysis and metabolomics. Anal. Bioanal Chem 404: 1165-1179.
    • (2012) Bioanal Chem , vol.404 , pp. 1165-1179
    • Barding Jr., G.A.1    Salditos, R.2    Larive, C.K.3
  • 4
    • 39149126712 scopus 로고    scopus 로고
    • Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts
    • Beckonert O, Keun HC, Ebbels TM, Bundy J, Holmes E, Lindon JC, Nicholson JK,. 2007. Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts. Nat Protoc 2: 2692-2703.
    • (2007) Nat Protoc , vol.2 , pp. 2692-2703
    • Beckonert, O.1    Keun, H.C.2    Ebbels, T.M.3    Bundy, J.4    Holmes, E.5    Lindon, J.C.6    Nicholson, J.K.7
  • 6
    • 77954086132 scopus 로고    scopus 로고
    • Development and optimization of a metabolomic method for analysis of adherent cell cultures
    • Danielsson AP, Moritz T, Mulder H, Spegel P,. 2010. Development and optimization of a metabolomic method for analysis of adherent cell cultures. Anal Biochem 404: 30-39.
    • (2010) Anal Biochem , vol.404 , pp. 30-39
    • Danielsson, A.P.1    Moritz, T.2    Mulder, H.3    Spegel, P.4
  • 7
    • 77954457415 scopus 로고    scopus 로고
    • Towards quantitative metabolomics of mammalian cells: Development of a metabolite extraction protocol
    • Dietmair S, Timmins NE, Gray PP, Nielsen LK, Kromer JO,. 2010. Towards quantitative metabolomics of mammalian cells: development of a metabolite extraction protocol. Anal Biochem 404: 155-164.
    • (2010) Anal Biochem , vol.404 , pp. 155-164
    • Dietmair, S.1    Timmins, N.E.2    Gray, P.P.3    Nielsen, L.K.4    Kromer, J.O.5
  • 9
    • 35448980422 scopus 로고    scopus 로고
    • Comparison of quenching and extraction methodologies for metabolome analysis of Lactobacillus plantarum
    • Faijes M, Mars AE, Smid EJ,. 2007. Comparison of quenching and extraction methodologies for metabolome analysis of Lactobacillus plantarum. Microb Cell Fact 6: 27-34.
    • (2007) Microb Cell Fact , vol.6 , pp. 27-34
    • Faijes, M.1    Mars, A.E.2    Smid, E.J.3
  • 10
    • 79956137695 scopus 로고    scopus 로고
    • Cross-platform comparison of Caenorhabditis elegans tissue extraction strategies for comprehensive metabolome coverage
    • Geier FM, Want EJ, Leroi AM, Bundy JG,. 2011. Cross-platform comparison of Caenorhabditis elegans tissue extraction strategies for comprehensive metabolome coverage. Anal Chem 83: 3730-3736.
    • (2011) Anal Chem , vol.83 , pp. 3730-3736
    • Geier, F.M.1    Want, E.J.2    Leroi, A.M.3    Bundy, J.G.4
  • 11
    • 0032532093 scopus 로고    scopus 로고
    • 31P NMR heteronuclear total correlation spectroscopy (heteroTOCSY)
    • 31P NMR heteronuclear total correlation spectroscopy (heteroTOCSY). Anal Biochem 263: 139-149.
    • (1998) Anal Biochem , vol.263 , pp. 139-149
    • Gradwell, M.J.1    Fan, T.W.2    Lane, A.N.3
  • 12
    • 0142138236 scopus 로고    scopus 로고
    • Metabonomics: NMR spectroscopy and pattern recognition analysis of body fluids and tissues for characterisation of xenobiotic toxicity and disease diagnosis
    • Griffin JL,. 2003. Metabonomics: NMR spectroscopy and pattern recognition analysis of body fluids and tissues for characterisation of xenobiotic toxicity and disease diagnosis. Curr Opin Chem Biol 7: 648-654.
    • (2003) Curr Opin Chem Biol , vol.7 , pp. 648-654
    • Griffin, J.L.1
  • 14
    • 72249107962 scopus 로고    scopus 로고
    • A comparison of metabolite extraction strategies for 1H-NMR-based metabolic profiling using mature leaf tissue from the model plant Arabidopsis thaliana
    • Kaiser KA, Barding GA, Jr., Larive CK,. 2009. A comparison of metabolite extraction strategies for 1H-NMR-based metabolic profiling using mature leaf tissue from the model plant Arabidopsis thaliana. Magn Reson Chem 47 (Suppl 1): S147-S156.
    • (2009) Magn Reson Chem , vol.47 , Issue.SUPPL. 1
    • Kaiser, K.A.1    Barding Jr., G.A.2    Larive, C.K.3
  • 15
    • 73349090880 scopus 로고    scopus 로고
    • Sample preparation for plant metabolomics
    • Kim H, Verpoorte R,. 2009. Sample preparation for plant metabolomics. Phytochem Anal 21: 4-13.
    • (2009) Phytochem Anal , vol.21 , pp. 4-13
    • Kim, H.1    Verpoorte, R.2
  • 16
    • 77749320523 scopus 로고    scopus 로고
    • NMR-based metabolomic analysis of plants
    • Kim HK, Choi YH, Verpoorte R,. 2010. NMR-based metabolomic analysis of plants. Nat Protoc 5: 536-549.
    • (2010) Nat Protoc , vol.5 , pp. 536-549
    • Kim, H.K.1    Choi, Y.H.2    Verpoorte, R.3
  • 17
    • 34249870845 scopus 로고    scopus 로고
    • Quantification and identification of isotopomer distributions of metabolites in crude cell exctracts using 1H TOCSY
    • Lane AN, Fan DY,. 2007. Quantification and identification of isotopomer distributions of metabolites in crude cell exctracts using 1H TOCSY. Metabolomics 3: 79-86.
    • (2007) Metabolomics , vol.3 , pp. 79-86
    • Lane, A.N.1    Fan, D.Y.2
  • 18
    • 68549108035 scopus 로고    scopus 로고
    • NMR metabolomic analysis of caco-2 cell differentiation
    • Lee IJ, Hom K, Bai G, Shapiro M,. 2009. NMR metabolomic analysis of caco-2 cell differentiation. J Proteome Res 8: 4104-4108.
    • (2009) J Proteome Res , vol.8 , pp. 4104-4108
    • Lee, I.J.1    Hom, K.2    Bai, G.3    Shapiro, M.4
  • 19
    • 33947427846 scopus 로고    scopus 로고
    • Evaluation of metabolite extraction strategies from tissue samples using NMR metabolomics
    • Lin C, Wu H, Tjeerdema R, Viant M,. 2007. Evaluation of metabolite extraction strategies from tissue samples using NMR metabolomics. Metabolomics 3: 55-67.
    • (2007) Metabolomics , vol.3 , pp. 55-67
    • Lin, C.1    Wu, H.2    Tjeerdema, R.3    Viant, M.4
  • 20
    • 2442719174 scopus 로고    scopus 로고
    • Metabonomics technologies and their applications in physiological monitoring, drug safety assessment and disease diagnosis
    • Lindon JC, Holmes E, Bollard ME, Stanley EG, Nicholson JK,. 2004. Metabonomics technologies and their applications in physiological monitoring, drug safety assessment and disease diagnosis. Biomarkers 9: 1-31.
    • (2004) Biomarkers , vol.9 , pp. 1-31
    • Lindon, J.C.1    Holmes, E.2    Bollard, M.E.3    Stanley, E.G.4    Nicholson, J.K.5
  • 21
    • 79955555427 scopus 로고    scopus 로고
    • Reducing time and increasing sensitivity in sample preparation for adherent mammalian cell metabolomics
    • Lorenz MA, Burant CF, Kennedy RT,. 2011. Reducing time and increasing sensitivity in sample preparation for adherent mammalian cell metabolomics. Anal Chem 83: 3406-3414.
    • (2011) Anal Chem , vol.83 , pp. 3406-3414
    • Lorenz, M.A.1    Burant, C.F.2    Kennedy, R.T.3
  • 22
    • 81155159664 scopus 로고    scopus 로고
    • Strategy for choosing extraction procedures for NMR-based metabolomic analysis of mammalian cells
    • Martineau E, Tea I, Loaec G, Giraudeau P, Akoka S,. 2011. Strategy for choosing extraction procedures for NMR-based metabolomic analysis of mammalian cells. Anal Bioanal Chem 401: 2133-2142.
    • (2011) Anal Bioanal Chem , vol.401 , pp. 2133-2142
    • Martineau, E.1    Tea, I.2    Loaec, G.3    Giraudeau, P.4    Akoka, S.5
  • 24
    • 34948814692 scopus 로고    scopus 로고
    • Metabolomics technologies and metabolites identification
    • Moco S, Bino RJ, De Vos F, Vervoort A,. 2007. Metabolomics technologies and metabolites identification. Trends Anal Chem 26: 855-866.
    • (2007) Trends Anal Chem , vol.26 , pp. 855-866
    • Moco, S.1    Bino, R.J.2    De Vos, F.3    Vervoort, A.4
  • 27
    • 37549064772 scopus 로고    scopus 로고
    • Simultaneous extraction of several metabolites of energy metabolism and related substances in mammalian cells: Optimization using experimental design
    • Ritter JB, Genzel Y, Reichl U,. 2008. Simultaneous extraction of several metabolites of energy metabolism and related substances in mammalian cells: optimization using experimental design. Anal Biochem 373: 349-369.
    • (2008) Anal Biochem , vol.373 , pp. 349-369
    • Ritter, J.B.1    Genzel, Y.2    Reichl, U.3
  • 28
    • 20544466649 scopus 로고    scopus 로고
    • Metabonomics in toxicology: A review
    • Robertson DG,. 2005. Metabonomics in toxicology: a review. Toxicol Sci 85: 809-822.
    • (2005) Toxicol Sci , vol.85 , pp. 809-822
    • Robertson, D.G.1
  • 31
    • 36148989929 scopus 로고    scopus 로고
    • High-throughput tissue extraction protocol for NMR- and MS-based metabolomics
    • Wu H, Southam AD, Hines A, Viant MR,. 2008. High-throughput tissue extraction protocol for NMR- and MS-based metabolomics. Anal Biochem 372: 204-212.
    • (2008) Anal Biochem , vol.372 , pp. 204-212
    • Wu, H.1    Southam, A.D.2    Hines, A.3    Viant, M.R.4
  • 32
    • 36649018536 scopus 로고    scopus 로고
    • Ex-vivo NMR of unprocessed tissue in water: A simplified procedure for studying intracranial neoplasms
    • Xu M, Ye J, Yang D, Xu X, Yeo TT, Ng WH, Lim CC,. 2007. Ex-vivo NMR of unprocessed tissue in water: a simplified procedure for studying intracranial neoplasms. Anal Bioanal Chem 389: 2153-2159.
    • (2007) Anal Bioanal Chem , vol.389 , pp. 2153-2159
    • Xu, M.1    Ye, J.2    Yang, D.3    Xu, X.4    Yeo, T.T.5    Ng, W.H.6    Lim, C.C.7
  • 33
    • 54749118571 scopus 로고    scopus 로고
    • Self-consistent metabolic mixture analysis by heteronuclear NMR. Application to a human cancer cell line
    • Zhang F, Bruschweiler-Li L, Robinette SL, Bruschweiler R,. 2008. Self-consistent metabolic mixture analysis by heteronuclear NMR. Application to a human cancer cell line. Anal Chem 80: 7549-7553.
    • (2008) Anal Chem , vol.80 , pp. 7549-7553
    • Zhang, F.1    Bruschweiler-Li, L.2    Robinette, S.L.3    Bruschweiler, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.