A comparison of metabolite extraction strategies for 1H-NMR- basedmetabolic profiling using mature leaf tissue from themodel plant Arabidopsis thaliana

Magnetic Resonance in Chemistry

Volumn 47, Issue SUPPL. 1, 2009, Pages

  Kaiser, Kayla A ^a   Barding, Gregory A ^a   Larive, Cynthia K ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

1H; Arabidopsis; Extraction; Metabolic profiling; Metabolomics; NMR; Plant

Indexed keywords

BIOMOLECULES; METABOLISM; NUCLEAR MAGNETIC RESONANCE; PHASE SEPARATION; PRINCIPAL COMPONENT ANALYSIS; SOLVENT EXTRACTION; SOLVENTS; TISSUE;

1H; ARABIDOPSIS; ARABIDOPSIS THALIANA; METABOLIC PROFILING; METABOLITE EXTRACTION; METABOLOMICS; PERCHLORIC ACIDS; PLANT; SOLVENT SYSTEM; SPECTRA'S;

METABOLITES;

EID: 72249107962     PISSN: 07491581     EISSN: 1097458X     Source Type: Journal    
DOI: 10.1002/mrc.2457     Document Type: Article

References (40)

1. K. A. Kaiser, C. E. Merrywell, F. Fang, C. K. Larive, in NMRSpectroscopy in Pharmaceutical Analysis, (Eds: U. Holzgrabe, I.Wawer, B. Diehl), Elsevier: Saint Louis, 2008.
2. M. M. B. Zvi, F. Negre-Zakharov, T.Masci, M.Ovadis, E. Shklarman, H. Ben-Meir, T. Tzfira, N. Dudareva, A. Vanstein, Plant Biotechnol. J. 2008, 6, 403.
3. E. Fukusaki, A. Kobayashi, J. Biosci. Bioeng. 2005, 100, 347.
4. D. Ryan, K. Robards, Sep. Purif. Rev. 2006, 35, 319.
5. S. Sato, A.Masanori, T. Soga, T.Nishioka, M. Tomita, BMC Syst. Biol. 2008, 2, 51.
6. S. G. Villas-Boas, J. Hojer-Pedersen, M. Akesson, J. Smedsgaard, J. Nielsen, Yeast 2005, 22, 1155.
7. R. P. Maharjan, T. Ferenci, Anal. Biochem. 2003, 313, 145.
8. K. Jernejc, Acta Chim. Slov. 2004, 51, 567.
9. H. Hajjaj, P. Blanc, G. Goma, J. Francois, FEMS Microbiol. Lett. 1998, 164, 195.
10. Z. Kerem, H. German-Shashoua, O. Yarden, J. Sci. Food Agric. 2005, 85, 406.
11. H. K. Kim, Y. H. Choi, T. J. C. Luijendijk, R. A. V. Rocha, R. Verpoorte, Phytochem. Anal. 2004, 15, 257.
12. L. Mattoli, F. Cangi, A. Maidecchi, C. Ghiara, E. Ragazzi, M. Tubaro, L. Stella, F. Tisato, P. Traldi, J. Mass. Spectrom. 2006, 41, 1534.
13. S. A. E. Brown, A. J. Simpson, M. J. Simpson, Environ. Toxicol. Chem. 2008, 27, 828.
14. C. Y. Lin, H.Wu, R. S. Tjeerdema, M. R. Viant, Metabolomics 2007, 3, 55.
15. H.Wu, A. D. Southam, A. Hines, M. R. Viant, Anal. Biochem. 2008, 372, 204.
16. B.N. Ametaj, G. Bobe, Y. Lu, J. W. Young, D. C. Beitz, J. Agric. Food Chem. 2003, 51, 2105.
17. J. E. LeBelle, N. G. Harris, S. R. Williams, K. K. Bhakoo, NMR Biomed. 2002, 15, 37.
18. E. J. Want, G. O'Maille, C. A. Smith, T. R. Brandon, W. Uritboonthai, C. Qin, S. A. Trauger, G. Siuzdak, Anal. Chem. 2006, 78, 743.
19. J. Gullberg, P. Jonsson, A. Nordstrom, M. Sjostrom, T. Moritz, Anal. Biochem. 2004, 331, 283.
20. R. E. Hausler, K. L. Fischer, U. I. Flugge, Anal. Biochem. 2000, 281, 1.
21. D. C. Boyes, A. M. Zayed, R. Ascenzi, A. J. McCaskill, N. E. Hoffman, K. R. Davis, J. Gorlach, Plant Cell 2001, 13, 1499.
22. O. Fiehn, J. Kopka, R. N. Trethewey, L. Willmitzer, Anal. Chem. 2000, 72, 3573.
23. R. L. Last, A. D. Jones, Y. Shachar-Hill, Nat. Rev.Mol. Cell Biol. 2007, 8, 167.
24. J. C. D'Auria, J. Gershenzon, Curr. Opin. Plant Biol. 2005, 8, 308.
25. N. J. Kruger, M. A. Tronscoso-Ponce, R.G. Ratcliffe, Nat. Protoc.2008, 3, 1001.
26. C. Branco-Price, K. A. Kaiser, C. J. H. Jang, C. K. Larive, J. Bailey-Serres, Plant J. 2008, 56, 743.
27. W. Weckwerth, K. Wenzel, O. Fiehn, Proteomics 2004, 4, 78.
28. A. Moing, M. Maucourt, C. Renaud, M. Gaudillere, R. Brouquisse, B. Lebouteiller, A. Gousset-Dupont, J. Vidal, D. Granot, B. Denoyes-Rothan, E. Lerceteau-Kohler, D. Rolin, Funct. Plant Biol. 2004, 31, 889.
29. O. Fiehn, J. Kopka, P. Dormann, T. Altmann, R. N. Trethewey, L. Willmitzer, Nat. Biotechnol. 2000, 18, 1157.
30. I. J. Colquhoun, J. Pestic. Sci. 2007, 32, 200.
31. E. J. Saude, B. D. Sykes, Metabolomics 2007, 3, 19.
32. M. Lauridsen, S. H. Hansen, J.W. Jaroszewski, C. Cornett, Anal.Chem. 2007, 79, 1181.
33. E. V. Roepenack-Lahaye, T. Degenkolb, M. Zerjeski, M. Franz, U. Roth, L.Wessjohann, J. Schmidt, D. Scheel, S. Clemens, Plant Physiol. 2004, 134, 548.
34. T.W.-M. Fan, R. M. Higashi, A. N. Lane, O. Jardetzky, Biochem. Biophys. Acta 1986, 882, 154.
35. M. Stitt, R. M. C. Lilley, R. Gerhard, H. W. Heldt, Methods Enzymol. 1989, 174, 518.
36. J. Szydlowski, M. Szykula, Fluid Phase Equilib. 1999, 154, 79.
37. B. Buchanan, W. Gruissem, R. Jones (Eds), Biochemistry & Molecular Biology of Plants, John Wiley & Sons: Somerset, 2000.
38. E. G. Bligh, W. J. Dyer, Can. J. Biochem. 1959, 37, 911.
39. K. E. Price, C. E. Lunte, C. K. Larive, J. Pharm. Biomed. Anal. 2008, 46, 737.
40. Q. Cui, I. A. Lewis, A. D. Hegeman, M. E. Anderson, J. Li, C. F. Schulte, W. M. Westler, H. R. Eghbalnia, M. R. Sussman, J. L. Markley, Nat. Biotechnol. 2008, 26, 162.