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Volumn 197, Issue 2, 2014, Pages 769-780

Effects of overlapping generations on linkage disequilibrium estimates of effective population size

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AMPHIBIA; ANIMAL EXPERIMENT; ANIMAL GENETICS; ARTICLE; BIRD; EFFECTIVE POPULATION SIZE; FISH; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENETIC DATABASE; LIFE HISTORY TRAIT; MAMMAL; NONHUMAN; OVARY CYCLE; OVERLAPPING GENE; PLANT; PLANT GENETICS; POPULATION GENETICS; PRIORITY JOURNAL; QUANTITATIVE GENETICS; REPTILE; SIMULATION; ANIMAL; BIOLOGICAL MODEL; EVOLUTION; POPULATION DENSITY;

EID: 84902532363     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.114.164822     Document Type: Article
Times cited : (266)

References (48)
  • 1
    • 77956864581 scopus 로고    scopus 로고
    • Genomics and the future of conservation genetics
    • Allendorf, F. W., P. A. Hohenlohe, and G. Luikart, 2010 Genomics and the future of conservation genetics. Nat. Rev. Genet. 11: 698-709.
    • (2010) Nat. Rev. Genet , vol.11 , pp. 698-709
    • Allendorf, F.W.1    Hohenlohe, P.A.2    Luikart, G.3
  • 2
    • 20144370938 scopus 로고    scopus 로고
    • SPIP 1.0: A program for simulating pedigrees and genetic data in age-structured populations
    • Anderson, E. C., and K. K. Dunham, 2005 SPIP 1.0: a program for simulating pedigrees and genetic data in age-structured populations. Mol. Ecol. Notes 5: 459-461.
    • (2005) Mol. Ecol. Notes , vol.5 , pp. 459-461
    • Anderson, E.C.1    Dunham, K.K.2
  • 3
    • 79952710368 scopus 로고    scopus 로고
    • Early detection of population declines: High power of genetic monitoring using effective population size estimators
    • Antao, T., A. Perez-Figueroa, and G. Luikart, 2011 Early detection of population declines: high power of genetic monitoring using effective population size estimators. Evol. Appl. 4: 144-154.
    • (2011) Evol. Appl , vol.4 , pp. 144-154
    • Antao, T.1    Perez-Figueroa, A.2    Luikart, G.3
  • 4
    • 1842532350 scopus 로고    scopus 로고
    • The Bayesian revolution in genetics
    • Beaumont, M. A., and B. Rannala, 2004 The Bayesian revolution in genetics. Nat. Rev. Genet. 5: 252-266.
    • (2004) Nat. Rev. Genet , vol.5 , pp. 252-266
    • Beaumont, M.A.1    Rannala, B.2
  • 5
    • 0028674867 scopus 로고
    • Developments in the prediction of effective population size
    • Caballero, A., 1994 Developments in the prediction of effective population size. Heredity 73: 657-679.
    • (1994) Heredity , vol.73 , pp. 657-679
    • Caballero, A.1
  • 6
    • 60349093708 scopus 로고    scopus 로고
    • Effective population size and patterns of molecular evolution and variation
    • Charlesworth, B., 2009 Effective population size and patterns of molecular evolution and variation. Nat. Rev. Genet. 10: 195-205.
    • (2009) Nat. Rev. Genet , vol.10 , pp. 195-205
    • Charlesworth, B.1
  • 7
    • 84875338503 scopus 로고    scopus 로고
    • Population genetics of the American eel (Anguilla rostrata): FST= 0 and North Atlantic Oscillation effects on demographic fluctuations of a panmictic species
    • Côté, C. L., P. A. Gagnaire, V. Bourret, G. Verreault, M. Castonguay et al., 2013 Population genetics of the American eel (Anguilla rostrata): FST= 0 and North Atlantic Oscillation effects on demographic fluctuations of a panmictic species. Mol. Ecol. 22: 1763-1776.
    • (2013) Mol. Ecol , vol.22 , pp. 1763-1776
    • Côté, C.L.1    Gagnaire, P.A.2    Bourret, V.3    Verreault, G.4    Castonguay, M.5
  • 8
    • 0001235253 scopus 로고
    • Inbreeding and variance effective population numbers
    • Crow, J. F., and C. Denniston, 1988 Inbreeding and variance effective population numbers. Evolution 42: 482-495.
    • (1988) Evolution , vol.42 , pp. 482-495
    • Crow, J.F.1    Denniston, C.2
  • 10
    • 84874448094 scopus 로고    scopus 로고
    • Interannual variation in effective number of breeders and estimation of effective population size in longlived iteroparous lake sturgeon (Acipenser fulvescens)
    • Duong, T. Y., K. T. Scribner, P. S. Forsythe, and J. A. Crossman, and E. A. Baker, 2013 Interannual variation in effective number of breeders and estimation of effective population size in longlived iteroparous lake sturgeon (Acipenser fulvescens). Mol. Ecol. 22: 1282-1294.
    • (2013) Mol. Ecol , vol.22 , pp. 1282-1294
    • Duong, T.Y.1    Scribner, K.T.2    Forsythe, P.S.3    Crossman, J.A.4    Baker, E.A.5
  • 11
    • 78049362245 scopus 로고    scopus 로고
    • Early detection of population fragmentation using linkage disequilibrium estimation of effective population size
    • England, P. R., G. Luikart, and R. S. Waples, 2010 Early detection of population fragmentation using linkage disequilibrium estimation of effective population size. Conserv. Genet. 11: 2425-2430.
    • (2010) Conserv. Genet , vol.11 , pp. 2425-2430
    • England, P.R.1    Luikart, G.2    Waples, R.S.3
  • 12
    • 33748762488 scopus 로고    scopus 로고
    • Computer programs for population genetics data analysis: A survival guide
    • Excoffier, L., and G. Heckel, 2006 Computer programs for population genetics data analysis: a survival guide. Nat. Rev. Genet. 7: 745-758.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 745-758
    • Excoffier, L.1    Heckel, G.2
  • 13
    • 0015102330 scopus 로고
    • Inbreeding and variance effective numbers in populations with overlapping generations
    • Felsenstein, J., 1971 Inbreeding and variance effective numbers in populations with overlapping generations. Genetics 68: 581-597.
    • (1971) Genetics , vol.68 , pp. 581-597
    • Felsenstein, J.1
  • 14
    • 0028874989 scopus 로고
    • Effective population size/adult population size ratios in wildlife: A review
    • Frankham, R., 1995 Effective population size/adult population size ratios in wildlife: a review. Genet. Res. 66: 95-107.
    • (1995) Genet. Res , vol.66 , pp. 95-107
    • Frankham, R.1
  • 15
    • 0015389841 scopus 로고
    • Effective size of population with overlapping generations
    • Hill, W. G., 1972 Effective size of population with overlapping generations. Theor. Popul. Biol. 3: 278-289.
    • (1972) Theor. Popul. Biol , vol.3 , pp. 278-289
    • Hill, W.G.1
  • 16
    • 0019771734 scopus 로고
    • Estimation of effective population size from data on linkage disequilibrium
    • Hill, W. G., 1981 Estimation of effective population size from data on linkage disequilibrium. Genet. Res. 38: 209-216.
    • (1981) Genet. Res , vol.38 , pp. 209-216
    • Hill, W.G.1
  • 17
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • Hill, W. G., and A. Robertson, 1968 Linkage disequilibrium in finite populations. Theor. Appl. Genet. 38: 226-231.
    • (1968) Theor. Appl. Genet , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.2
  • 18
    • 84892861467 scopus 로고    scopus 로고
    • Testing single-sample estimators of effective population size in genetically structured populations
    • Holleley, C. E., R. A. Nichols, M. R. Whitehead, A. T. Adamack, M. R. Gunn et al., 2014 Testing single-sample estimators of effective population size in genetically structured populations. Conserv. Genet. 15: 23-35.
    • (2014) Conserv. Genet , vol.15 , pp. 23-35
    • Holleley, C.E.1    Nichols, R.A.2    Whitehead, M.R.3    Adamack, A.T.4    Gunn, M.R.5
  • 19
    • 33645676302 scopus 로고    scopus 로고
    • Genetic approaches for estimating the effective size of populations
    • Leberg, P., 2005 Genetic approaches for estimating the effective size of populations. J. Wildl. Manage. 69: 1385-1399.
    • (2005) J. Wildl. Manage , vol.69 , pp. 1385-1399
    • Leberg, P.1
  • 20
    • 80053209408 scopus 로고    scopus 로고
    • The influence of persistent individual differences and age at maturity on effective population size
    • Lee, A. M., S. Engen, and B.-E. Sæther, 2011 The influence of persistent individual differences and age at maturity on effective population size. Proc. R. Soc. Lond. Ser. B Biol. Sci. 278: 3303-3312.
    • (2011) Proc. R. Soc. Lond. Ser. B Biol. Sci , vol.278 , pp. 3303-3312
    • Lee, A.M.1    Engen, S.2    Sæther, B.-E.3
  • 21
    • 77952093315 scopus 로고    scopus 로고
    • Estimation of census and effective population sizes: The increasing usefulness of DNA-based approaches
    • Luikart, G., N. Ryman, D. A. Tallmon, M. K. Schwartz, and F. W. Allendorf, 2010 Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches. Conserv. Genet. 11: 355-373.
    • (2010) Conserv. Genet , vol.11 , pp. 355-373
    • Luikart, G.1    Ryman, N.2    Tallmon, D.A.3    Schwartz, M.K.4    Allendorf, F.W.5
  • 22
    • 0015891902 scopus 로고
    • Linkage disequilibrium in subdivided populations
    • Nei, M., and W. Li, 1973 Linkage disequilibrium in subdivided populations. Genetics 75: 213-219.
    • (1973) Genetics , vol.75 , pp. 213-219
    • Nei, M.1    Li, W.2
  • 23
    • 0019776310 scopus 로고
    • Genetic drift and estimation of effective population size
    • Nei, M., and F. Tajima, 1981 Genetic drift and estimation of effective population size. Genetics 98: 625-640.
    • (1981) Genetics , vol.98 , pp. 625-640
    • Nei, M.1    Tajima, F.2
  • 24
    • 0036065008 scopus 로고    scopus 로고
    • The effective size of annual plant populations: The interaction of a seed bank with fluctuating population size in maintaining genetic variation
    • Nunney, L., 2002 The effective size of annual plant populations: the interaction of a seed bank with fluctuating population size in maintaining genetic variation. Am. Nat. 160: 195-204.
    • (2002) Am. Nat , vol.160 , pp. 195-204
    • Nunney, L.1
  • 25
    • 84876585105 scopus 로고    scopus 로고
    • Effective/census population size ratio estimation: A compendium and appraisal
    • Palstra, F. P., and D. J. Fraser, 2012 Effective/census population size ratio estimation: a compendium and appraisal. Ecol. Evol. 2: 2357-2365.
    • (2012) Ecol. Evol , vol.2 , pp. 2357-2365
    • Palstra, F.P.1    Fraser, D.J.2
  • 26
    • 44349104809 scopus 로고    scopus 로고
    • Forward-time simulations of nonrandom mating populations using simuPOP
    • Peng, B., and C. I. Amos, 2008 Forward-time simulations of nonrandom mating populations using simuPOP. Bioinformatics 24: 1408-1409.
    • (2008) Bioinformatics , vol.24 , pp. 1408-1409
    • Peng, B.1    Amos, C.I.2
  • 27
    • 24644505748 scopus 로고    scopus 로고
    • Kimmel, 2005 simuPOP: A forward-time population genetics simulation environment
    • Peng, B., and M. Kimmel, 2005 simuPOP: a forward-time population genetics simulation environment. Bioinformatics 21: 3686-3687.
    • Bioinformatics , vol.21 , pp. 3686-3687
    • Peng, B.1
  • 28
    • 84874086523 scopus 로고    scopus 로고
    • Linkage disequilibrium and effective population size when generations overlap
    • Robinson, J. D., and G. R. Moyer, 2013 Linkage disequilibrium and effective population size when generations overlap. Evol. Appl. 6: 290-302.
    • (2013) Evol. Appl , vol.6 , pp. 290-302
    • Robinson, J.D.1    Moyer, G.R.2
  • 29
    • 33845599911 scopus 로고    scopus 로고
    • Genetic monitoring: A promising tool for conservation and management. Trends Ecol
    • Schwartz, M. K., G. Luikart, and R. S. Waples, 2007 Genetic monitoring: a promising tool for conservation and management. Trends Ecol. Evol. 22: 25-33.
    • (2007) Evol , vol.22 , pp. 25-33
    • Schwartz, M.K.1    Luikart, G.2    Waples, R.S.3
  • 30
    • 1842276436 scopus 로고
    • The Wahlund effect for the two-locus model
    • Sinnock, P., 1975 The Wahlund effect for the two-locus model. Am. Nat. 109: 565-570.
    • (1975) Am. Nat , vol.109 , pp. 565-570
    • Sinnock, P.1
  • 31
    • 84856245652 scopus 로고    scopus 로고
    • Monitoring the effective population size of a brown bear (Ursus arctos) population using new single-sample approaches
    • Skrbinšek, T., M. Jelenčič, L. Waits, I. Kos, K. Jerina et al., 2012 Monitoring the effective population size of a brown bear (Ursus arctos) population using new single-sample approaches. Mol. Ecol. 21: 862-875.
    • (2012) Mol. Ecol , vol.21 , pp. 862-875
    • Skrbinšek, T.1    Jelenčič, M.2    Waits, L.3    Kos, I.4    Jerina, K.5
  • 32
    • 0015070635 scopus 로고
    • Linkage disequilibrium and homozygosity of chromosome segments in finite populations
    • Sved, J. A., 1971 Linkage disequilibrium and homozygosity of chromosome segments in finite populations. Theor. Popul. Biol. 2: 125-141.
    • (1971) Theor. Popul. Biol , vol.2 , pp. 125-141
    • Sved, J.A.1
  • 33
    • 77954553696 scopus 로고    scopus 로고
    • When are genetic methods useful for estimating contemporary abundance and detecting population trends? Mol
    • Tallmon, D. A., D. Gregovich, R. S. Waples, C. S. Baker, J. Jackson et al., 2010 When are genetic methods useful for estimating contemporary abundance and detecting population trends? Mol. Ecol. Resour. 10: 684-692.
    • (2010) Ecol. Resour , vol.10 , pp. 684-692
    • Tallmon, D.A.1    Gregovich, D.2    Waples, R.S.3    Baker, C.S.4    Jackson, J.5
  • 34
    • 1542542759 scopus 로고    scopus 로고
    • When genes go to sleep: The population genetic consequences of seed dormancy and monocarpic perenniality
    • Vitalis, R., S. Glémin, and I. Olivieri, 2004 When genes go to sleep: the population genetic consequences of seed dormancy and monocarpic perenniality. Am. Nat. 163: 295-311.
    • (2004) Am. Nat , vol.163 , pp. 295-311
    • Vitalis, R.1    Glémin, S.2    Olivieri, I.3
  • 35
    • 2442544496 scopus 로고    scopus 로고
    • Sibship reconstruction from genetic data with typing errors
    • Wang, J., 2004 Sibship reconstruction from genetic data with typing errors. Genetics 166: 1963-1979.
    • (2004) Genetics , vol.166 , pp. 1963-1979
    • Wang, J.1
  • 36
    • 31344454299 scopus 로고    scopus 로고
    • Estimation of effective population sizes from data on genetic markers
    • Wang, J., 2005 Estimation of effective population sizes from data on genetic markers. Phil. Trans. Royal Soc., Series B: 360: 1395-1409.
    • (2005) Phil. Trans. Royal Soc., Series B , vol.360 , pp. 1395-1409
    • Wang, J.1
  • 37
    • 65549163137 scopus 로고    scopus 로고
    • A new method for estimating effective population sizes from a single sample of multilocus genotypes
    • Wang, J., 2009 A new method for estimating effective population sizes from a single sample of multilocus genotypes. Mol. Ecol. 18: 2148-2164.
    • (2009) Mol. Ecol , vol.18 , pp. 2148-2164
    • Wang, J.1
  • 38
    • 77953893634 scopus 로고    scopus 로고
    • Estimation of parameters of inbreeding and genetic drift in populations with overlapping generations
    • Wang, J., P. Brekke, E. Huchard, L. A. Knapp, and G. Cowlishaw, 2010 Estimation of parameters of inbreeding and genetic drift in populations with overlapping generations. Evolution 64: 1704-1718.
    • (2010) Evolution , vol.64 , pp. 1704-1718
    • Wang, J.1    Brekke, P.2    Huchard, E.3    Knapp, L.A.4    Cowlishaw, G.5
  • 39
    • 0035989420 scopus 로고    scopus 로고
    • The effective size of fluctuating salmon populations
    • Waples, R. S., 2002 The effective size of fluctuating salmon populations. Genetics 161: 783-791.
    • (2002) Genetics , vol.161 , pp. 783-791
    • Waples, R.S.1
  • 40
    • 33644878743 scopus 로고    scopus 로고
    • Genetic estimates of contemporary effective population size: To what time periods do the estimates apply? Mol
    • Waples, R. S., 2005 Genetic estimates of contemporary effective population size: To what time periods do the estimates apply? Mol. Ecol. 14: 3335-3352.
    • (2005) Ecol , vol.14 , pp. 3335-3352
    • Waples, R.S.1
  • 41
    • 29844444078 scopus 로고    scopus 로고
    • Seed banks, salmon, and sleeping genes: Effective population size in semelparous, age-structured species with fluctuating abundance
    • Waples, R. S., 2006 Seed banks, salmon, and sleeping genes: effective population size in semelparous, age-structured species with fluctuating abundance. Am. Nat. 167: 118-135.
    • (2006) Am. Nat , vol.167 , pp. 118-135
    • Waples, R.S.1
  • 42
    • 84901693888 scopus 로고    scopus 로고
    • Intermittent breeding and constraints on litter size: Consequences for effective population size per generation (Ne) and per reproductive cycle (Nb)
    • DOI: 10.1111/evo.12384
    • Waples, R. S., and T. Antao, 2014 Intermittent breeding and constraints on litter size: consequences for effective population size per generation (Ne) and per reproductive cycle (Nb). Evolution. DOI: 10.1111/evo.12384.
    • (2014) Evolution
    • Waples, R.S.1    Antao, T.2
  • 43
    • 47249162403 scopus 로고    scopus 로고
    • LDNe: A program for estimating effective population size from data on linkage disequilibrium
    • Waples, R. S., and C. Do, 2008 LDNe: a program for estimating effective population size from data on linkage disequilibrium. Mol. Ecol. Resour. 8: 753-756.
    • (2008) Mol. Ecol. Resour , vol.8 , pp. 753-756
    • Waples, R.S.1    Do, C.2
  • 44
    • 77954278662 scopus 로고    scopus 로고
    • Linkage disequilibrium estimates of contemporary Ne using highly variable genetic markers: A largely untapped resource for applied conservation and evolution
    • Waples, R. S., and C. Do, 2010 Linkage disequilibrium estimates of contemporary Ne using highly variable genetic markers: a largely untapped resource for applied conservation and evolution. Evol. Appl. 3: 244-262.
    • (2010) Evol. Appl , vol.3 , pp. 244-262
    • Waples, R.S.1    Do, C.2
  • 45
    • 33846483038 scopus 로고    scopus 로고
    • Temporal estimates of effective population size in species with overlapping generations
    • Waples, R. S., and M. Yokota, 2007 Temporal estimates of effective population size in species with overlapping generations. Genetics 175: 219-233.
    • (2007) Genetics , vol.175 , pp. 219-233
    • Waples, R.S.1    Yokota, M.2
  • 46
    • 79960442320 scopus 로고    scopus 로고
    • Calculating Ne and Ne/N in age-structured populations: A hybrid Felsenstein-Hill approach
    • Waples, R. S., C. Do, and J. Chopelet, 2011 Calculating Ne and Ne/N in age-structured populations: a hybrid Felsenstein-Hill approach. Ecology 92: 1513-1522.
    • (2011) Ecology , vol.92 , pp. 1513-1522
    • Waples, R.S.1    Do, C.2    Chopelet, J.3
  • 47
    • 85052488788 scopus 로고    scopus 로고
    • Simple life history traits explain key effective population size ratios across diverse taxa
    • Waples, R. S., G. Luikart, J. R. Faulkner, and D. A. Tallmon, 2013 Simple life history traits explain key effective population size ratios across diverse taxa. Proc. Biol. Sci. 280: 20131339.
    • (2013) Proc. Biol. Sci , vol.280 , pp. 20131339
    • Waples, R.S.1    Luikart, G.2    Faulkner, J.R.3    Tallmon, D.A.4
  • 48
    • 84900471431 scopus 로고    scopus 로고
    • Pronounced differences in genetic structure despite overall ecological similarity for two Ambystoma salamanders in the same landscape
    • DOI: 10.1007/s10592-014-0562-7
    • Whiteley, A. R., K. McGarigal, and M. K. Schwartz, 2014 Pronounced differences in genetic structure despite overall ecological similarity for two Ambystoma salamanders in the same landscape. Conserv. Genet. DOI: 10.1007/s10592-014-0562-7.
    • (2014) Conserv. Genet
    • Whiteley, A.R.1    McGarigal, K.2    Schwartz, M.K.3


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