메뉴 건너뛰기




Volumn 18, Issue 10, 2009, Pages 2148-2164

A new method for estimating effective population sizes from a single sample of multilocus genotypes

Author keywords

Effective population size; Full sibs; Genetic markers; Half sibs; Sibship assignments

Indexed keywords

ANIMAL; ARTICLE; BIOLOGICAL MODEL; COMPUTER SIMULATION; GENETICS; GENOTYPE; POPULATION DENSITY; POPULATION GENETICS; TROUT;

EID: 65549163137     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04175.x     Document Type: Article
Times cited : (322)

References (37)
  • 1
    • 0027101580 scopus 로고
    • Use of linkage disequilibrium data to estimate effective size of hatchery and natural fish populations
    • Bartley D, Bagley M, Gall G, Bentley B (1992) Use of linkage disequilibrium data to estimate effective size of hatchery and natural fish populations. Conservation Biology, 6, 365 375. (Pubitemid 23402370)
    • (1992) Conservation Biology , vol.6 , Issue.3 , pp. 365-375
    • Bartley, D.1    Bagley, M.2    Gall, G.3    Bentley, B.4
  • 3
    • 0036191720 scopus 로고    scopus 로고
    • Likelihood-based estimation of the effective population size using temporal changes in allele frequencies: A genealogical approach
    • Berthier P, Beaumont MA, Cornuet JM, Luikart G (2002) Likelihood-based estimation of the effective population size using temporal changes in allele frequencies: a genealogical approach. Genetics, 160, 741 751. (Pubitemid 34194543)
    • (2002) Genetics , vol.160 , Issue.2 , pp. 741-751
    • Berthier, P.1    Beaumont, M.A.2    Cornuet, J.-M.3    Luikart, G.4
  • 4
    • 0028674867 scopus 로고
    • Developments in the prediction of effective population size
    • Caballero A (1994) Developments in the prediction of effective population size. Heredity, 73, 657 679.
    • (1994) Heredity , vol.73 , pp. 657-679
    • Caballero, A.1
  • 5
    • 0028796709 scopus 로고
    • On the effective size of populations with separate sexes, with particular reference to sex-linked genes
    • Caballero A (1995) On the effective size of populations with separate sexes, with particular reference to sex-linked genes. Genetics, 139, 1007 1011.
    • (1995) Genetics , vol.139 , pp. 1007-1011
    • Caballero, A.1
  • 6
    • 0001235253 scopus 로고
    • Inbreeding and variance effective population numbers
    • Crow JF, Denniston C (1988) Inbreeding and variance effective population numbers. Evolution, 42, 482 495.
    • (1988) Evolution , vol.42 , pp. 482-495
    • Crow, J.F.1    Denniston, C.2
  • 8
    • 0034879445 scopus 로고    scopus 로고
    • A Bayesian approach to the identification of panmictic populations and the assignment of individuals
    • DOI 10.1017/S001667230100502X
    • Dawson KJ, Belkhir K (2001) A Bayesian approach to the identification of panmictic populations and the assignment of individuals. Genetical Research, 78, 59 77. (Pubitemid 32755322)
    • (2001) Genetical Research , vol.78 , Issue.1 , pp. 59-77
    • Dawson, K.J.1    Belkhir, K.2
  • 9
    • 0035019565 scopus 로고    scopus 로고
    • Assignment of paternity groups without access to parental genotypes: Multiple mating and developmental plasticity in squid
    • DOI 10.1046/j.1365-294X.2001.01258.x
    • Emery AM, Wilson IJ, Craig S, Boyle PR, Noble LR (2001) Assignment of paternity groups without access to parental genotypes: multiple mating and developmental plasticity in squid. Molecular Ecology, 10, 1265 1278. (Pubitemid 32455791)
    • (2001) Molecular Ecology , vol.10 , Issue.5 , pp. 1265-1278
    • Emery, A.M.1    Wilson, I.J.2    Craig, S.3    Boyle, P.R.4    Noble, L.R.5
  • 10
    • 33745043543 scopus 로고    scopus 로고
    • Estimating effective population size from linkage disequilibrium: Severe bias in small samples
    • DOI 10.1007/s10592-005-9103-8
    • England PR, Cornuet JM, Berthier P, Tallmon DA, Luikart G (2006) Estimating effective population size from linkage disequilibrium: severe bias in small samples. Conservation Genetics, 7, 303 308. (Pubitemid 43873284)
    • (2006) Conservation Genetics , vol.7 , Issue.2 , pp. 303-308
    • England, P.R.1    Cornuet, J.-M.2    Berthier, P.3    Tallmon, D.A.4    Luikart, G.5
  • 12
    • 0019771734 scopus 로고
    • Estimation of effective population size from data on linkage disequilibrium
    • Hill WG (1981) Estimation of effective population size from data on linkage disequilibrium. Genetical Research, 38, 209 216. (Pubitemid 12173026)
    • (1981) Genetical Research , vol.38 , Issue.3 , pp. 209-216
    • Hill, W.G.1
  • 13
    • 0032980587 scopus 로고    scopus 로고
    • Estimating the effective number of breeders from heterozygote excess in progeny
    • Luikart G, Cornuet JM (1999) Estimating the effective number of breeders from heterozygote excess in progeny. Genetics, 151, 1211 1216. (Pubitemid 29118129)
    • (1999) Genetics , vol.151 , Issue.3 , pp. 1211-1216
    • Luikart, G.1    Cornuet, J.-M.2
  • 14
    • 0028837926 scopus 로고
    • The inbreeding effective population number in dioecious populations
    • Nagylaki T (1995) The inbreeding effective population number in dioecious populations. Genetics, 139, 473 485.
    • (1995) Genetics , vol.139 , pp. 473-485
    • Nagylaki, T.1
  • 16
    • 0019776310 scopus 로고
    • Genetic drift and estimation of effective population size
    • Nei M, Tajima F (1981) Genetic drift and estimation of effective population size. Genetics, 98, 625 640. (Pubitemid 12172671)
    • (1981) Genetics , vol.98 , Issue.3 , pp. 625-640
    • Nei, M.1    Tajima, F.2
  • 17
    • 65549150328 scopus 로고    scopus 로고
    • Estimation of effective number of breeders from molecular coancestry of single cohort sample
    • Nomura T (2008) Estimation of effective number of breeders from molecular coancestry of single cohort sample. Evolutionary Applications, 1, 462 474.
    • (2008) Evolutionary Applications , vol.1 , pp. 462-474
    • Nomura, T.1
  • 18
    • 47649115949 scopus 로고    scopus 로고
    • Genetic estimates of contemporary effective population size: What can they tell us about the importance of genetic stochasticity for wild population persistence?
    • Palstra FP, Ruzzante DE (2008) Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence? Molecular Ecology, 17, 3428 3447.
    • (2008) Molecular Ecology , vol.17 , pp. 3428-3447
    • Palstra, F.P.1    Ruzzante, D.E.2
  • 19
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945 959. (Pubitemid 30397141)
    • (2000) Genetics , vol.155 , Issue.2 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 20
    • 0029744513 scopus 로고    scopus 로고
    • On the potential for estimating the effective number of breeders from heterozygote-excess in progeny
    • Pudovkin AI, Zaykin DV, Hedgecock D (1996) On the potential for estimating the effective number of breeders from heterozygote-excess in progeny. Genetics, 144, 383 387. (Pubitemid 26291945)
    • (1996) Genetics , vol.144 , Issue.1 , pp. 383-387
    • Pudovkin, A.I.1    Zaykin, D.V.2    Hedgecock, D.3
  • 22
    • 84973961195 scopus 로고
    • The interpretation of genotypic ratios in domestic animal populations
    • Robertson A (1965) The interpretation of genotypic ratios in domestic animal populations. Animal Production, 7, 319 324.
    • (1965) Animal Production , vol.7 , pp. 319-324
    • Robertson, A.1
  • 23
    • 0000159977 scopus 로고    scopus 로고
    • Review of DNA-based census and effective population size estimators
    • Schwartz MK, Tallman DA, Luikart G (1999) Review of DNA-based census and effective population size estimators. Animal Conservation, 1, 293 299.
    • (1999) Animal Conservation , vol.1 , pp. 293-299
    • Schwartz, M.K.1    Tallman, D.A.2    Luikart, G.3
  • 24
    • 33845599911 scopus 로고    scopus 로고
    • Genetic monitoring as a promising tool for conservation and management
    • Schwartz MK, Luikart G, Waples RS (2007) Genetic monitoring as a promising tool for conservation and management. Trends in Ecology & Evolution, 22, 25 33.
    • (2007) Trends in Ecology & Evolution , vol.22 , pp. 25-33
    • Schwartz, M.K.1    Luikart, G.2    Waples, R.S.3
  • 25
    • 38949178372 scopus 로고    scopus 로고
    • OneSamp: A program to estimate effective population size using approximate Bayesian computation
    • Tallman DA, Koyuk A, Luikart G, Beaumont MA (2008) OneSamp: a program to estimate effective population size using approximate Bayesian computation. Molecular Ecology Resources, 8, 299 301.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 299-301
    • Tallman, D.A.1    Koyuk, A.2    Luikart, G.3    Beaumont, M.A.4
  • 26
    • 0033886119 scopus 로고    scopus 로고
    • Estimating quantitative genetic parameters using sibships reconstructed from marker data
    • Thomas SC, Hill WG (2000) Estimating quantitative genetic parameters using sibships reconstructed from marker data. Genetics, 155, 1961 1972. (Pubitemid 30626410)
    • (2000) Genetics , vol.155 , Issue.4 , pp. 1961-1972
    • Thomas, S.C.1    Hill, W.G.2
  • 27
    • 0035704882 scopus 로고    scopus 로고
    • A pseudo-likelihood method for estimating effective population size from temporally spaced samples
    • Wang JL (2001) A pseudo-likelihood method for estimating effective population size from temporally spaced samples. Genetical Research, 78, 243 257. (Pubitemid 34130463)
    • (2001) Genetical Research , vol.78 , Issue.3 , pp. 243-257
    • Wang, J.1
  • 28
    • 2442544496 scopus 로고    scopus 로고
    • Sibship Reconstruction from Genetic Data with Typing Errors
    • DOI 10.1534/genetics.166.4.1963
    • Wang JL (2004) Sibship reconstruction from genetic data with typing errors. Genetics, 166, 1963 1979. (Pubitemid 38621074)
    • (2004) Genetics , vol.166 , Issue.4 , pp. 1963-1979
    • Wang, J.1
  • 29
    • 31344454299 scopus 로고    scopus 로고
    • Estimation of effective population sizes from data on genetic markers
    • DOI 10.1098/rstb.2005.1682
    • Wang JL (2005) Estimation of effective population sizes from data on genetic markers. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 360, 1395 1409. (Pubitemid 43138543)
    • (2005) Philosophical Transactions of the Royal Society B: Biological Sciences , vol.360 , Issue.1459 , pp. 1395-1409
    • Wang, J.1
  • 30
    • 0033972016 scopus 로고    scopus 로고
    • Marker-assisted selection to increase effective population size by reducing Mendelian segregation variance
    • Wang JL, Hill WG (2000) Marker-assisted selection to increase effective population size by reducing Mendelian segregation variance. Genetics, 154, 475 489. (Pubitemid 30045936)
    • (2000) Genetics , vol.154 , Issue.1 , pp. 475-489
    • Wang, J.1    Hill, W.G.2
  • 31
    • 65549135685 scopus 로고    scopus 로고
    • Parentage and sibship inference from multi-locus genotype data under polygamy
    • in press).
    • Wang JL, Santure AW (2009) Parentage and sibship inference from multi-locus genotype data under polygamy. Genetics (in press).
    • (2009) Genetics
    • Wang, J.L.1    Santure, A.W.2
  • 32
    • 0037280106 scopus 로고    scopus 로고
    • Estimating effective population size and migration rates from genetic samples over space and time
    • Wang JL, Whitlock MC (2003) Estimating effective population size and migration rates from genetic samples over space and time. Genetics, 163, 429 446. (Pubitemid 36222685)
    • (2003) Genetics , vol.163 , Issue.1 , pp. 429-446
    • Wang, J.1    Whitlock, M.C.2
  • 33
    • 0024498122 scopus 로고
    • A generalized approach for estimating effective population size from temporal changes in allele frequency
    • Waples RS (1989) A generalised approach for estimating effective population size from temporal changes in allele frequency. Genetics, 121, 379 391. (Pubitemid 19052026)
    • (1989) Genetics , vol.121 , Issue.2 , pp. 379-391
    • Waples, R.S.1
  • 34
    • 0026314562 scopus 로고
    • Genetic methods for estimating the effective size of Cetacean populations
    • In. Special Issue 13. (ed. ). pp. International Whale Commission, London.
    • Waples RS (1991) Genetic methods for estimating the effective size of Cetacean populations. In : Genetic Ecology of Whales and Dolphins, Special Issue 13. (ed. Hoelzel AR), pp. 279 300. International Whale Commission, London.
    • (1991) Genetic Ecology of Whales and Dolphins , pp. 279-300
    • Waples, R.S.1    Hoelzel, A.R.2
  • 35
    • 33745015584 scopus 로고    scopus 로고
    • A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci
    • DOI 10.1007/s10592-005-9100-y
    • Waples RS (2006) A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci. Conservation Genetics, 7, 167 184. (Pubitemid 43873272)
    • (2006) Conservation Genetics , vol.7 , Issue.2 , pp. 167-184
    • Waples, R.S.1
  • 36
    • 0037355101 scopus 로고    scopus 로고
    • Bayesian inference of recent migration rates using multilocus genotypes
    • Wilson GA, Rannala B (2003) Bayesian inference of recent migration rates using multilocus genotypes. Genetics, 163, 1177 1191. (Pubitemid 36417957)
    • (2003) Genetics , vol.163 , Issue.3 , pp. 1177-1191
    • Wilson, G.A.1    Rannala, B.2
  • 37
    • 0003331563 scopus 로고
    • Evolution and the Genetics of Populations
    • The University of Chicago Press, Chicago, Illinois.
    • Wright S (1969) Evolution and the Genetics of Populations, Vol. 2, The Theory of Gene Frequencies. The University of Chicago Press, Chicago, Illinois.
    • (1969) The Theory of Gene Frequencies , vol.2
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.