메뉴 건너뛰기




Volumn 30, Issue 12, 2014, Pages 1747-1754

Automated analysis of giant unilamellar vesicles using circular Hough transformation

Author keywords

[No Author keywords available]

Indexed keywords

LIPOSOME; MEMBRANE PROTEIN; PROTEIN BAX;

EID: 84902495996     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu102     Document Type: Article
Times cited : (26)

References (45)
  • 1
    • 84862837463 scopus 로고    scopus 로고
    • The single-giant unilamellar vesicle method reveals lysenin-induced pore formation in lipid membranes containing sphingomyelin
    • Alam, J.M. et al. (2012) The single-giant unilamellar vesicle method reveals lysenin-induced pore formation in lipid membranes containing sphingomyelin. Biochemistry, 51, 5160-5172.
    • (2012) Biochemistry , vol.51 , pp. 5160-5172
    • Alam, J.M.1
  • 3
    • 0034650523 scopus 로고    scopus 로고
    • Bax oligomerization is required for channel-forming activity in liposomes and to trigger cytochrome c release from mitochondria
    • Antonsson, B. et al. (2000) Bax oligomerization is required for channel-forming activity in liposomes and to trigger cytochrome c release from mitochondria. Biochem. J., 345, 271-278.
    • (2000) Biochem. J. , vol.345 , pp. 271-278
    • Antonsson, B.1
  • 4
    • 78649761049 scopus 로고    scopus 로고
    • All-or-none versus graded single-vesicle analysis reveals lipid composition effects on membrane permeabilization
    • Apellaniz, B. et al. (2010a) All-or-none versus graded single-vesicle analysis reveals lipid composition effects on membrane permeabilization. Biophys. J., 99, 3619-3628.
    • (2010) Biophys. J. , vol.99 , pp. 3619-3628
    • Apellaniz, B.1
  • 5
    • 77951296711 scopus 로고    scopus 로고
    • Confocal microscopy of giant vesicles supports the absence of HIV-1 neutralizing 2F5 antibody reactivity to plasma membrane phospholipids
    • Apellaniz, B. et al. (2010b) Confocal microscopy of giant vesicles supports the absence of HIV-1 neutralizing 2F5 antibody reactivity to plasma membrane phospholipids. Febs Lett., 584, 1591-1596.
    • (2010) Febs Lett. , vol.584 , pp. 1591-1596
    • Apellaniz, B.1
  • 6
    • 79955797494 scopus 로고
    • Destabilization exerted by peptides derived from the membrane-proximal external region of HIV-1 gp41 in lipid vesicles supporting fluid phase coexistence
    • Apellaniz, B. et al. (2011) Destabilization exerted by peptides derived from the membrane-proximal external region of HIV-1 gp41 in lipid vesicles supporting fluid phase coexistence. Biochimica Et Biophysica Acta-Biomembranes, 1808, 1797-1805.
    • (1808) Biochimica et Biophysica Acta-Biomembranes , pp. 1797-1805
    • Apellaniz, B.1
  • 7
    • 67049119439 scopus 로고    scopus 로고
    • Distinct mechanisms of lipid bilayer perturbation induced by peptides derived from the membrane-proximal external region of HIV-1 gp41
    • Apellaniz, B. et al. (2009) Distinct mechanisms of lipid bilayer perturbation induced by peptides derived from the membrane-proximal external region of HIV-1 gp41. Biochemistry, 48, 5320-5331.
    • (2009) Biochemistry , vol.48 , pp. 5320-5331
    • Apellaniz, B.1
  • 8
    • 0242331729 scopus 로고    scopus 로고
    • Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension
    • Baumgart, T. et al. (2003) Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension. Nature, 425, 821-824.
    • (2003) Nature , vol.425 , pp. 821-824
    • Baumgart, T.1
  • 9
    • 84876274935 scopus 로고    scopus 로고
    • Cytochrome c causes pore formation in cardiolipin-containing membranes
    • Bergstrom, C.L. et al. (2013) Cytochrome c causes pore formation in cardiolipin-containing membranes. Proc. Natl Acad. Sci. USA, 110, 6269-6274.
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 6269-6274
    • Bergstrom, C.L.1
  • 10
    • 84872816605 scopus 로고    scopus 로고
    • Mechanistic differences in the membrane activity of bax and Bcl-xL correlate with their opposing roles in apoptosis
    • Bleicken, S. et al. (2013a) Mechanistic Differences in the Membrane Activity of Bax and Bcl-xL Correlate with Their Opposing Roles in Apoptosis. Biophys. J., 104, 421-431.
    • (2013) Biophys. J. , vol.104 , pp. 421-431
    • Bleicken, S.1
  • 11
    • 84887840021 scopus 로고    scopus 로고
    • Proapoptotic Bax and Bak proteins form stable protein-permeable pores of tunable size
    • Bleicken, S. et al. (2013b) Proapoptotic Bax and Bak proteins form stable protein-permeable pores of tunable size. J. Biol. Chem., 288, 33241-33252.
    • (2013) J. Biol. Chem. , vol.288 , pp. 33241-33252
    • Bleicken, S.1
  • 12
    • 33745950626 scopus 로고    scopus 로고
    • Mitochondrial outer membrane permeabilization during apoptosis: The innocent bystander scenario
    • Chipuk, J.E. et al. (2006) Mitochondrial outer membrane permeabilization during apoptosis: the innocent bystander scenario. Cell Death Differ., 13, 1396-1402.
    • (2006) Cell Death Differ. , vol.13 , pp. 1396-1402
    • Chipuk, J.E.1
  • 13
    • 0015285440 scopus 로고
    • Use of the Hough transformation to detect lines and curves in pictures
    • Duda, R.O. and Hart, P.E. (1972) Use of the Hough transformation to detect lines and curves in pictures. Commun. ACM, 15, 5.
    • (1972) Commun. ACM , vol.15 , pp. 5
    • Duda, R.O.1    Hart, P.E.2
  • 14
    • 78349267221 scopus 로고    scopus 로고
    • Pores formed by bax alpha 5 relax to a smaller size and keep at equilibrium
    • Fuertes, G. et al. (2010) Pores formed by bax alpha 5 relax to a smaller size and keep at equilibrium. Biophys. J., 99, 2917-2925.
    • (2010) Biophys. J. , vol.99 , pp. 2917-2925
    • Fuertes, G.1
  • 15
    • 70350768995 scopus 로고    scopus 로고
    • Membrane promotes tBID interaction with BCL(XL)
    • Garcia-Saez, A.J. et al. (2009) Membrane promotes tBID interaction with BCL(XL). Nat. Struct. Mol. Biol., 16, 1178-1185.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 1178-1185
    • Garcia-Saez, A.J.1
  • 16
    • 77955907520 scopus 로고    scopus 로고
    • Permeabilization of the outer mitochondrial membrane by Bcl-2 proteins
    • Garcia-Saez, A.J. et al. (2010) Permeabilization of the outer mitochondrial membrane by Bcl-2 proteins. Adv. Exp. Med. Biol., 677, 91-105.
    • (2010) Adv. Exp. Med. Biol. , vol.677 , pp. 91-105
    • Garcia-Saez, A.J.1
  • 17
    • 0032562796 scopus 로고    scopus 로고
    • Bax in murine thymus is a soluble monomeric protein that displays differential detergent-induced conformations
    • Hsu, Y.T. and Youle, R.J. (1998) Bax in murine thymus is a soluble monomeric protein that displays differential detergent-induced conformations. J. Biol. Chem., 273, 10777-10783.
    • (1998) J. Biol. Chem. , vol.273 , pp. 10777-10783
    • Hsu, Y.T.1    Youle, R.J.2
  • 18
    • 0031007644 scopus 로고    scopus 로고
    • Nonionic detergents induce dimerization among members of the Bcl-2 family
    • Hsu, Y.T. and Youle, R.J. (1997) Nonionic detergents induce dimerization among members of the Bcl-2 family. J. Biol. Chem., 272, 13829-13834.
    • (1997) J. Biol. Chem. , vol.272 , pp. 13829-13834
    • Hsu, Y.T.1    Youle, R.J.2
  • 20
    • 79959777767 scopus 로고    scopus 로고
    • Giant unilamellar vesicles (GUVs) as a new tool for analysis of caspase-8/Bid-FL complex binding to cardiolipin and its functional activity
    • Jalmar, O. et al. (2010) Giant unilamellar vesicles (GUVs) as a new tool for analysis of caspase-8/Bid-FL complex binding to cardiolipin and its functional activity. Cell Death Disease, 1, e103.
    • (2010) Cell Death Disease , vol.1
    • Jalmar, O.1
  • 21
    • 84881316536 scopus 로고    scopus 로고
    • Effects of transmembrane potential and pH gradient on the cytochrome c-promoted fusion of mitochondrial mimetic membranes
    • Kawai, C. et al. (2013) Effects of transmembrane potential and pH gradient on the cytochrome c-promoted fusion of mitochondrial mimetic membranes. J. Bioenerg. Biomembr., 45, 421-430.
    • (2013) J. Bioenerg. Biomembr. , vol.45 , pp. 421-430
    • Kawai, C.1
  • 22
    • 77956944037 scopus 로고    scopus 로고
    • Yeast Lipids Can Phase-separate into Micrometer-scale Membrane Domains
    • Klose, C. et al. (2010) Yeast Lipids Can Phase-separate into Micrometer-scale Membrane Domains. J. Biol. Chem., 285, 30224-30232.
    • (2010) J. Biol. Chem. , vol.285 , pp. 30224-30232
    • Klose, C.1
  • 23
    • 13944277343 scopus 로고    scopus 로고
    • BH3 domains of BH3-only proteins differentially regulate Bax-mediated mitochondrial membrane permeabilization both directly and indirectly
    • Kuwana, T. et al. (2005) BH3 domains of BH3-only proteins differentially regulate Bax-mediated mitochondrial membrane permeabilization both directly and indirectly. Mol. Cell, 17, 525-535.
    • (2005) Mol. Cell , vol.17 , pp. 525-535
    • Kuwana, T.1
  • 24
    • 0036850312 scopus 로고    scopus 로고
    • Bid, Bax, and lipids cooperate to form supramolecular openings in the outer mitochondrial membrane
    • Kuwana, T. et al. (2002) Bid, Bax, and lipids cooperate to form supramolecular openings in the outer mitochondrial membrane. Cell, 111, 331-342.
    • (2002) Cell , vol.111 , pp. 331-342
    • Kuwana, T.1
  • 25
    • 10344221598 scopus 로고    scopus 로고
    • Cooperative extraction of membrane nanotubes by molecular motors
    • Leduc, C. et al. (2004) Cooperative extraction of membrane nanotubes by molecular motors. Proc. Natl Acad. Sci. USA, 101, 17096-17101.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 17096-17101
    • Leduc, C.1
  • 26
    • 42449116949 scopus 로고    scopus 로고
    • Mechanism and kinetics of pore formation in membranes by water-soluble amphipathic peptides
    • Lee, M.T. et al. (2008) Mechanism and kinetics of pore formation in membranes by water-soluble amphipathic peptides. Proc. Natl Acad. Sci. USA, 105, 5087-5092.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 5087-5092
    • Lee, M.T.1
  • 27
    • 0036728834 scopus 로고    scopus 로고
    • Distinct BH3 domains either sensitize or activate mitochon-drial apoptosis, serving as prototype cancer therapeutics
    • Letai, A. et al. (2002) Distinct BH3 domains either sensitize or activate mitochon-drial apoptosis, serving as prototype cancer therapeutics. Cancer Cell, 2, 183-192.
    • (2002) Cancer Cell , vol.2 , pp. 183-192
    • Letai, A.1
  • 28
    • 0032555697 scopus 로고    scopus 로고
    • Cleavage of BID by caspase 8 mediates the mitochondrial damage in the Fas pathway of apoptosis
    • Li, H. et al. (1998) Cleavage of BID by caspase 8 mediates the mitochondrial damage in the Fas pathway of apoptosis. Cell, 94, 491-501.
    • (1998) Cell , vol.94 , pp. 491-501
    • Li, H.1
  • 29
    • 0035997034 scopus 로고    scopus 로고
    • Mechanisms of equinatoxin II-induced transport through the membrane of a giant phospholipid vesicle
    • Mally, M. et al. (2002) Mechanisms of equinatoxin II-induced transport through the membrane of a giant phospholipid vesicle. Biophys. J., 83, 944-953.
    • (2002) Biophys. J. , vol.83 , pp. 944-953
    • Mally, M.1
  • 30
    • 62349119443 scopus 로고    scopus 로고
    • Algorithms for on-line monitoring of micro spheres in an optical tweezers-based assembly cell
    • Peng, T. et al. (2007) Algorithms for on-line monitoring of micro spheres in an optical tweezers-based assembly cell. J. Comput. Inform. Sci. Engineer., 7, 9.
    • (2007) J. Comput. Inform. Sci. Engineer. , vol.7 , pp. 9
    • Peng, T.1
  • 31
    • 84855503658 scopus 로고    scopus 로고
    • Perforin activity at membranes leads to invaginations and vesicle formation
    • Praper, T. et al. (2011) Perforin activity at membranes leads to invaginations and vesicle formation. Proc. Natl Acad. Sci. USA, 108, 21016-21021.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 21016-21021
    • Praper, T.1
  • 32
    • 77749246128 scopus 로고    scopus 로고
    • Membrane curvature controls dynamin polymerization
    • Roux, A. et al. (2010) Membrane curvature controls dynamin polymerization. Proc. Natl Acad. Sci. USA, 107, 4141-4146.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 4141-4146
    • Roux, A.1
  • 33
    • 23044515069 scopus 로고    scopus 로고
    • Feature point tracking and trajectory analysis for video imaging in cell biology
    • Sbalzarini, I.F. and Koumoutsakos, P. (2005) Feature point tracking and trajectory analysis for video imaging in cell biology. J. Struct. Biol., 151, 182-195.
    • (2005) J. Struct. Biol. , vol.151 , pp. 182-195
    • Sbalzarini, I.F.1    Koumoutsakos, P.2
  • 34
    • 47749109057 scopus 로고    scopus 로고
    • Equinatoxin II permeabilizing activity depends on the presence of sphingomyelin and lipid phase coexistence
    • Schon, P. et al. (2008) Equinatoxin II permeabilizing activity depends on the presence of sphingomyelin and lipid phase coexistence. Biophys. J., 95, 691-698.
    • (2008) Biophys. J. , vol.95 , pp. 691-698
    • Schon, P.1
  • 35
    • 84864980066 scopus 로고    scopus 로고
    • Phosphatidylinositol 4, 5-Bisphosphate (PI(4, 5)P2)-dependent Oligomerization of Fibroblast Growth Factor 2 (FGF2) Triggers the Formation of a Lipidic Membrane Pore Implicated in Unconventional Secretion
    • Steringer, J.P. et al. (2012) Phosphatidylinositol 4, 5-Bisphosphate (PI(4, 5)P2)-dependent Oligomerization of Fibroblast Growth Factor 2 (FGF2) Triggers the Formation of a Lipidic Membrane Pore Implicated in Unconventional Secretion. J. Biol. Chem., 287, 27659-27669.
    • (2012) J. Biol. Chem. , vol.287 , pp. 27659-27669
    • Steringer, J.P.1
  • 36
    • 0033713002 scopus 로고    scopus 로고
    • Structure of Bax: Coregulation of dimer formation and intracellular localization
    • Suzuki, M. et al. (2000) Structure of Bax: coregulation of dimer formation and intracellular localization. Cell, 103, 645-654.
    • (2000) Cell , vol.103 , pp. 645-654
    • Suzuki, M.1
  • 37
    • 65249174105 scopus 로고    scopus 로고
    • Magainin 2-induced pore formation in the lipid membranes depends on its concentration in the membrane interface
    • Tamba, Y. and Yamazaki, M. (2009) Magainin 2-induced pore formation in the lipid membranes depends on its concentration in the membrane interface. J. Phys. Chem. B, 113, 4846-4852.
    • (2009) J. Phys. Chem. B , vol.113 , pp. 4846-4852
    • Tamba, Y.1    Yamazaki, M.2
  • 38
    • 28544437689 scopus 로고    scopus 로고
    • Single giant unilamellar vesicle method reveals effect of antimicrobial peptide magainin 2 on membrane permeability
    • Tamba, Y. and Yamazaki, M. (2005) Single giant unilamellar vesicle method reveals effect of antimicrobial peptide magainin 2 on membrane permeability. Biochemistry, 44, 15823-15833.
    • (2005) Biochemistry , vol.44 , pp. 15823-15833
    • Tamba, Y.1    Yamazaki, M.2
  • 39
    • 34247626376 scopus 로고    scopus 로고
    • Single GUV method reveals interaction of tea catechin (-)-epigallocatechin gallate with lipid membranes
    • Tamba, Y. et al. (2007) Single GUV method reveals interaction of tea catechin (-)-epigallocatechin gallate with lipid membranes. Biophys. J., 92, 3178-3194.
    • (2007) Biophys. J. , vol.92 , pp. 3178-3194
    • Tamba, Y.1
  • 40
    • 78650763561 scopus 로고    scopus 로고
    • Membrane permeabilization by oligomeric alpha-Synuclein: In search of the mechanism
    • van Rooijen, B.D. et al. (2010) Membrane permeabilization by oligomeric alpha-Synuclein: in search of the mechanism. PLoS One, 5, e14292.
    • (2010) PLoS One , vol.5
    • Van Rooijen, B.D.1
  • 41
    • 84880368509 scopus 로고    scopus 로고
    • Statistical analysis of peptide-induced graded and all-or-none fluxes in giant vesicles
    • Wheaten, S.A. et al. (2013a) Statistical analysis of peptide-induced graded and all-or-none fluxes in giant vesicles. Biophys. J., 105, 432-443.
    • (2013) Biophys. J. , vol.105 , pp. 432-443
    • Wheaten, S.A.1
  • 42
    • 84887665716 scopus 로고    scopus 로고
    • Translocation of cationic amphipathic peptides across the membranes of pure phospholipid giant vesicles
    • Wheaten, S.A. et al. (2013b) Translocation of cationic amphipathic peptides across the membranes of pure phospholipid giant vesicles. J. Am. Chem. Soc., 135, 16517-16525.
    • (2013) J. Am. Chem. Soc. , vol.135 , pp. 16517-16525
    • Wheaten, S.A.1
  • 43
    • 77950863406 scopus 로고    scopus 로고
    • Molecular mechanism of multivesicular body biogenesis by ESCRT complexes
    • Wollert, T. and Hurley, J.H. (2010) Molecular mechanism of multivesicular body biogenesis by ESCRT complexes. Nature, 464, 864-869.
    • (2010) Nature , vol.464 , pp. 864-869
    • Wollert, T.1    Hurley, J.H.2
  • 44
    • 80455179540 scopus 로고    scopus 로고
    • A new approach to analyse effects of nanoparticles on lipid vesicles
    • Zupanc, J. et al. (2010) A new approach to analyse effects of nanoparticles on lipid vesicles. Int. J. Biomed. Nanosci. Nanotechnol., 1, 34-51.
    • (2010) Int. J. Biomed. Nanosci. Nanotechnol. , vol.1 , pp. 34-51
    • Zupanc, J.1
  • 45
    • 81355138358 scopus 로고    scopus 로고
    • Markov random field model for segmenting large populations of lipid vesicles from micrographs
    • Zupanc, J. et al. (2011) Markov random field model for segmenting large populations of lipid vesicles from micrographs. J. Liposome Res., 21, 315-323.
    • (2011) J. Liposome Res. , vol.21 , pp. 315-323
    • Zupanc, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.