-
1
-
-
2942564430
-
Prediction of post-translational glycosylation and phos-phorylation of proteins from the amino acid sequence
-
Blom, N. et al. (2004) Prediction of post-translational glycosylation and phos-phorylation of proteins from the amino acid sequence. Proteomics, 4, 1633-1649.
-
(2004)
Proteomics
, vol.4
, pp. 1633-1649
-
-
Blom, N.1
-
2
-
-
79952117302
-
Phosphoproteome resource for systems biology research
-
Bodenmiller, B. and Aebersold, R. (2011) Phosphoproteome resource for systems biology research. Methods Mol. Biol., 694, 307-322.
-
(2011)
Methods Mol. Biol.
, vol.694
, pp. 307-322
-
-
Bodenmiller, B.1
Aebersold, R.2
-
3
-
-
0034383949
-
The regulation of protein function by multisite phosphorylation- A 25 year update
-
Cohen, P. (2000) The regulation of protein function by multisite phosphorylation- A 25 year update. Trends Biochem. Sci., 25, 596-601.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 596-601
-
-
Cohen, P.1
-
4
-
-
78651320816
-
Phospho.ELM: A database of phosphorylation sites-update 2011
-
Dinkel, H. et al. (2010) Phospho.ELM: a database of phosphorylation sites-update 2011. Nucleic Acids Res., 39, D261-D267.
-
(2010)
Nucleic Acids Res.
, vol.39
-
-
Dinkel, H.1
-
5
-
-
33646023117
-
An introduction to ROC analysis
-
Fawcett, T. (2006) An introduction to ROC analysis. Pattern Recognit. Lett., 27, 861-874.
-
(2006)
Pattern Recognit. Lett.
, vol.27
, pp. 861-874
-
-
Fawcett, T.1
-
6
-
-
75549090603
-
The Pfam protein families database
-
Finn, R.D. et al. (2010) The Pfam protein families database. Nucleic Acids Res., 38, D211-D222.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Finn, R.D.1
-
7
-
-
84857047339
-
PhosphoSitePlus: A comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse
-
Hornbeck, P.V. et al. (2012) PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse. Nucleic Acids Res., 40, D261-D270.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Hornbeck, P.V.1
-
8
-
-
84891361322
-
PhosphoNetworks: A database for human phosphorylation networks
-
Hu, J. et al. (2014) PhosphoNetworks: a database for human phosphorylation networks. Bioinformatics, 30, 141-142.
-
(2014)
Bioinformatics
, vol.30
, pp. 141-142
-
-
Hu, J.1
-
9
-
-
84858602406
-
InterPro in 2011: New developments in the family and domain prediction database
-
Hunter, S. et al. (2012) InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res., 40, D306-D312.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Hunter, S.1
-
10
-
-
2342473198
-
The importance of intrinsic disorder for protein phosphorylation
-
Iakoucheva, L.M. et al. (2004) The importance of intrinsic disorder for protein phosphorylation. Nucleic Acids Res., 32, 1037-1049.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1037-1049
-
-
Iakoucheva, L.M.1
-
11
-
-
77950468073
-
Identification of substrates for Ser/Thr kinases using residue-based statistical pair potentials
-
Kumar, N. and Mohanty, D. (2010) Identification of substrates for Ser/Thr kinases using residue-based statistical pair potentials. Bioinformatics, 26, 189-197.
-
(2010)
Bioinformatics
, vol.26
, pp. 189-197
-
-
Kumar, N.1
Mohanty, D.2
-
12
-
-
34447498931
-
Stabilization and activation of p53 induced by Cdk5 contributes to neuronal cell death
-
Lee, J.H. et al. (2007) Stabilization and activation of p53 induced by Cdk5 contributes to neuronal cell death. J. Cell Sci., 120, 2259-2271.
-
(2007)
J. Cell Sci.
, vol.120
, pp. 2259-2271
-
-
Lee, J.H.1
-
13
-
-
34250743173
-
Systematic discovery of in vivo phosphorylation networks
-
Linding, R. et al. (2007) Systematic discovery of in vivo phosphorylation networks. Cell, 129, 1415-1426.
-
(2007)
Cell
, vol.129
, pp. 1415-1426
-
-
Linding, R.1
-
14
-
-
77955354765
-
Modular composition predicts kinase/substrate interactions
-
Liu, Y. and Tozeren, A. (2010) Modular composition predicts kinase/substrate interactions. BMC Bioinformatics, 11, 349.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 349
-
-
Liu, Y.1
Tozeren, A.2
-
15
-
-
77956548953
-
Cytoscape Web: An interactive web-based network browser
-
Lopes, C.T. et al. (2010) Cytoscape Web: an interactive web-based network browser. Bioinformatics, 26, 2347-2348.
-
(2010)
Bioinformatics
, vol.26
, pp. 2347-2348
-
-
Lopes, C.T.1
-
16
-
-
0037032835
-
The protein kinase complement of the human genome
-
Manning, G. et al. (2002) The protein kinase complement of the human genome. Science, 298, 1912-1934.
-
(2002)
Science
, vol.298
, pp. 1912-1934
-
-
Manning, G.1
-
17
-
-
55749111058
-
Linear motif atlas for phosphorylation-dependent signaling
-
Miller, M.L. et al. (2008) Linear motif atlas for phosphorylation- dependent signaling. Sci. Signal., 1, ra2.
-
(2008)
Sci. Signal.
, vol.1
-
-
Miller, M.L.1
-
18
-
-
77952986553
-
Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs
-
Mok, J. et al. (2010) Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs. Sci. Signal., 3, ra12.
-
(2010)
Sci. Signal.
, vol.3
-
-
Mok, J.1
-
19
-
-
84876557296
-
Construction of human activity-based phosphorylation networks
-
Newman, R.H. et al. (2013) Construction of human activity-based phosphorylation networks. Mol. Syst. Biol., 9, 655.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 655
-
-
Newman, R.H.1
-
20
-
-
0042622251
-
Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs
-
Obenauer, J.C. et al. (2003) Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs. Nucleic Acids Res., 31, 3635-3641.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3635-3641
-
-
Obenauer, J.C.1
-
21
-
-
77952132933
-
Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases
-
Prisic, S. et al. (2010) Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases. Proc. Natl Acad. Sci. USA, 107, 7521-7526.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 7521-7526
-
-
Prisic, S.1
-
22
-
-
48449084853
-
The Predikin webserver: Improved prediction of protein kinase peptide specificity using structural information
-
Saunders, N.F. and Kobe, B. (2008) The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information. Nucleic Acids Res., 36, W286-W290.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Saunders, N.F.1
Kobe, B.2
-
23
-
-
84867153786
-
Systematic analysis of protein phosphorylation networks from phosphoproteomic data
-
Song, C. et al. (2012) Systematic analysis of protein phosphorylation networks from phosphoproteomic data. Mol. Cell Proteomics, 11, 1070-1083.
-
(2012)
Mol. Cell Proteomics
, vol.11
, pp. 1070-1083
-
-
Song, C.1
-
24
-
-
0035943340
-
Correlated sequence-signatures as markers of protein-protein interaction
-
Sprinzak, E. and Margalit, H. (2001) Correlated sequence-signatures as markers of protein-protein interaction. J. Mol. Biol., 311, 681-692.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 681-692
-
-
Sprinzak, E.1
Margalit, H.2
-
25
-
-
33644873184
-
BioGRID: A general repository for interaction datasets
-
Stark, C. et al. (2006) BioGRID: a general repository for interaction datasets. Nucleic Acids Res., 34, D535-D539.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Stark, C.1
-
26
-
-
78651344377
-
3did: Identification and classification of domain-based interactions of known three-dimensional structure
-
Stein, A. et al. (2011) 3did: identification and classification of domain-based interactions of known three-dimensional structure. Nucleic Acids Res., 39, D718-D723.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Stein, A.1
-
27
-
-
78651324347
-
The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
-
Szklarczyk, D. et al. (2011) The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res., 39, D561-D568.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Szklarczyk, D.1
-
28
-
-
33645758540
-
PPSP: Prediction of PK-specific phosphorylation site with Bayesian decision theory
-
Xue, Y. et al. (2006) PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory. BMC Bioinformatics, 7, 163.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 163
-
-
Xue, Y.1
-
29
-
-
52649145895
-
GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy
-
Xue, Y. et al. (2008) GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy. Mol. Cell. Proteomics, 7, 1598-1608.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 1598-1608
-
-
Xue, Y.1
|