메뉴 건너뛰기




Volumn 448, Issue 4, 2014, Pages 365-371

Genomic analysis and expression investigation of caleosin gene family in Arabidopsis

Author keywords

Caleosin; Classification; Evolution; Expression; Function

Indexed keywords

CALCIUM; CALEOSIN; HORMONE; MEMBRANE PROTEIN; PROTEOLIPID PROTEIN; UNCLASSIFIED DRUG;

EID: 84901826121     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2014.04.115     Document Type: Article
Times cited : (33)

References (44)
  • 1
    • 84855708946 scopus 로고    scopus 로고
    • Biogenesis and functions of lipid droplets in plants thematic review series: Lipid droplet synthesis and metabolism: From yeast to man
    • K.D. Chapman, J.M. Dyer, and R.T. Mullen Biogenesis and functions of lipid droplets in plants thematic review series: lipid droplet synthesis and metabolism: from yeast to man J. Lipid Res. 53 2012 215 226
    • (2012) J. Lipid Res. , vol.53 , pp. 215-226
    • Chapman, K.D.1    Dyer, J.M.2    Mullen, R.T.3
  • 2
    • 0034924506 scopus 로고    scopus 로고
    • The Brassica napus calcium-binding protein, caleosin, has distinct endoplasmic reticulum- and lipid body-associated isoforms
    • I. Hernandez-Pinzon, K. Patel, and D.J. Murphy The Brassica napus calcium-binding protein, caleosin, has distinct endoplasmic reticulum- and lipid body-associated isoforms Plant Physiol. Biochem. 39 2001 615 622
    • (2001) Plant Physiol. Biochem. , vol.39 , pp. 615-622
    • Hernandez-Pinzon, I.1    Patel, K.2    Murphy, D.J.3
  • 3
    • 0033213638 scopus 로고    scopus 로고
    • Cloning and secondary structure analysis of caleosin, a unique calcium-binding protein in oil bodies of plant seeds
    • J.C.F. Chen, C.C.Y. Tsai, and J.T. Tzen Cloning and secondary structure analysis of caleosin, a unique calcium-binding protein in oil bodies of plant seeds Plant Cell Physiol. 40 1999 1079 1086
    • (1999) Plant Cell Physiol. , vol.40 , pp. 1079-1086
    • Chen, J.C.F.1    Tsai, C.C.Y.2    Tzen, J.T.3
  • 4
    • 0005324072 scopus 로고    scopus 로고
    • Arabidopsis thaliana: A model plant for genome analysis
    • D.W. Meinke, J.M. Cherry, and C. Dean et al. Arabidopsis thaliana: a model plant for genome analysis Science 282 1998 662 682
    • (1998) Science , vol.282 , pp. 662-682
    • Meinke, D.W.1    Cherry, J.M.2    Dean, C.3
  • 5
    • 33845929997 scopus 로고    scopus 로고
    • Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif
    • A. Hanano, M. Burcklen, and M. Flenet et al. Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif J. Biol. Chem. 281 2006 33140 33151
    • (2006) J. Biol. Chem. , vol.281 , pp. 33140-33151
    • Hanano, A.1    Burcklen, M.2    Flenet, M.3
  • 6
    • 33748334331 scopus 로고    scopus 로고
    • A role for caleosin in degradation of oil-body storage lipid during seed germination
    • M. Poxleitner, S.W. Rogers, and A. Lacey Samuels et al. A role for caleosin in degradation of oil-body storage lipid during seed germination Plant J. 47 2006 917 933
    • (2006) Plant J. , vol.47 , pp. 917-933
    • Poxleitner, M.1    Rogers, S.W.2    Lacey Samuels, A.3
  • 7
    • 22444433064 scopus 로고    scopus 로고
    • Differentially expressed genes associated with dormancy or germination of Arabidopsis thaliana seeds
    • P.E. Toorop, R.M. Barroco, and G. Engler et al. Differentially expressed genes associated with dormancy or germination of Arabidopsis thaliana seeds Planta 221 2005 637 647
    • (2005) Planta , vol.221 , pp. 637-647
    • Toorop, P.E.1    Barroco, R.M.2    Engler, G.3
  • 8
    • 67649464241 scopus 로고    scopus 로고
    • Roles of a membrane-bound caleosin and putative peroxygenase in biotic and abiotic stress responses in Arabidopsis
    • M. Partridge, and D.J. Murphy Roles of a membrane-bound caleosin and putative peroxygenase in biotic and abiotic stress responses in Arabidopsis Plant Physiol. Biochem. 47 2009 796 806
    • (2009) Plant Physiol. Biochem. , vol.47 , pp. 796-806
    • Partridge, M.1    Murphy, D.J.2
  • 9
    • 79956125692 scopus 로고    scopus 로고
    • A stress-responsive caleosin-like protein, AtCLO4, acts as a negative regulator of ABA responses in Arabidopsis
    • Y.Y. Kim, K.W. Jung, and K.S. Yoo et al. A stress-responsive caleosin-like protein, AtCLO4, acts as a negative regulator of ABA responses in Arabidopsis Plant Cell Physiol. 52 2011 874 884
    • (2011) Plant Cell Physiol. , vol.52 , pp. 874-884
    • Kim, Y.Y.1    Jung, K.W.2    Yoo, K.S.3
  • 10
    • 67649411773 scopus 로고    scopus 로고
    • Breeding response of transcript profiling in developing seeds of Brassica napus
    • Y. Hu, G. Wu, and Y. Cao et al. Breeding response of transcript profiling in developing seeds of Brassica napus BMC Mol. Biol. 10 2009 49
    • (2009) BMC Mol. Biol. , vol.10 , pp. 49
    • Hu, Y.1    Wu, G.2    Cao, Y.3
  • 11
    • 0035180589 scopus 로고    scopus 로고
    • The Arabidopsis Information Resource (TAIR): A comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
    • E. Huala, A.W. Dickerman, and M. Garcia-Hernandez et al. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant Nucleic Acids Res. 29 2001 102 105
    • (2001) Nucleic Acids Res. , vol.29 , pp. 102-105
    • Huala, E.1    Dickerman, A.W.2    Garcia-Hernandez, M.3
  • 13
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: Interactive sequence similarity searching
    • R.D. Finn, J. Clements, and S.R. Eddy HMMER web server: interactive sequence similarity searching Nucleic Acids Res. 39 2011 W29 W37
    • (2011) Nucleic Acids Res. , vol.39
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 14
    • 84858602406 scopus 로고    scopus 로고
    • InterPro in 2011: New developments in the family and domain prediction database
    • S. Hunter, P. Jones, and A. Mitchell et al. InterPro in 2011: new developments in the family and domain prediction database Nucleic Acids Res. 40 2011 D306 D312
    • (2011) Nucleic Acids Res. , vol.40
    • Hunter, S.1    Jones, P.2    Mitchell, A.3
  • 15
    • 0043122944 scopus 로고    scopus 로고
    • ExPASy: The proteomics server for in-depth protein knowledge and analysis
    • E. Gasteiger, A. Gattiker, and C. Hoogland et al. ExPASy: the proteomics server for in-depth protein knowledge and analysis Nucleic Acids Res. 31 2003 3784 3788
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3784-3788
    • Gasteiger, E.1    Gattiker, A.2    Hoogland, C.3
  • 16
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • J. Kyte, and R.F. Doolittle A simple method for displaying the hydropathic character of a protein J. Mol. Biol. 157 1982 105 132
    • (1982) J. Mol. Biol. , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 17
    • 0033579464 scopus 로고    scopus 로고
    • Sequence- and structure-based prediction of eukaryotic protein phosphorylation sites
    • N. Blom, S. Gammeltoft, and S. Brunak Sequence- and structure-based prediction of eukaryotic protein phosphorylation sites J. Mol. Biol. 294 1999 1351 1362
    • (1999) J. Mol. Biol. , vol.294 , pp. 1351-1362
    • Blom, N.1    Gammeltoft, S.2    Brunak, S.3
  • 18
    • 33644847172 scopus 로고    scopus 로고
    • Prediction of protein stability changes for single-site mutations using support vector machines
    • J. Cheng, A. Randall, and P. Baldi Prediction of protein stability changes for single-site mutations using support vector machines Proteins 62 2006 1125 1132
    • (2006) Proteins , vol.62 , pp. 1125-1132
    • Cheng, J.1    Randall, A.2    Baldi, P.3
  • 19
    • 33747823564 scopus 로고    scopus 로고
    • MEME: Discovering and analyzing DNA and protein sequence motifs
    • T.L. Bailey, N. Williams, and C. Misleh et al. MEME: discovering and analyzing DNA and protein sequence motifs Nucleic Acids Res. 34 2006 W369 W373
    • (2006) Nucleic Acids Res. , vol.34
    • Bailey, T.L.1    Williams, N.2    Misleh, C.3
  • 21
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular evolutionary genetics analysis version 6
    • K. Tamura, G. Stecher, and D. Peterson et al. MEGA6: molecular evolutionary genetics analysis version 6 Mol. Biol. Evol. 30 2013 2725 2729
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3
  • 22
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • S. Guindon, J.F. Dufayard, and V. Lefort et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 Syst. Biol. 59 2010 307 321
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3
  • 23
    • 77954744704 scopus 로고    scopus 로고
    • Genome-wide identification, classification, and expression analysis of the arabinogalactan protein gene family in rice (Oryza sativa L.)
    • H. Ma, and J. Zhao Genome-wide identification, classification, and expression analysis of the arabinogalactan protein gene family in rice (Oryza sativa L.) J. Exp. Bot. 61 2010 2647 2668
    • (2010) J. Exp. Bot. , vol.61 , pp. 2647-2668
    • Ma, H.1    Zhao, J.2
  • 24
    • 33645509923 scopus 로고    scopus 로고
    • Evolution of Arabidopsis microRNA families through duplication events
    • C. Maher, L. Stein, and D. Ware Evolution of Arabidopsis microRNA families through duplication events Genome Res. 16 2006 510 519
    • (2006) Genome Res. , vol.16 , pp. 510-519
    • Maher, C.1    Stein, L.2    Ware, D.3
  • 25
    • 84876531652 scopus 로고    scopus 로고
    • PGDD: A database of gene and genome duplication in plants
    • T.H. Lee, H. Tang, and X. Wang et al. PGDD: a database of gene and genome duplication in plants Nucleic Acids Res. 41 2013 D1152 D1158
    • (2013) Nucleic Acids Res. , vol.41
    • Lee, T.H.1    Tang, H.2    Wang, X.3
  • 26
    • 3142700743 scopus 로고    scopus 로고
    • Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
    • G. Blanc, and K.H. Wolfe Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes Plant Cell 16 2004 1667 1678
    • (2004) Plant Cell , vol.16 , pp. 1667-1678
    • Blanc, G.1    Wolfe, K.H.2
  • 28
    • 0032918558 scopus 로고    scopus 로고
    • Plant cis-acting regulatory DNA elements (PLACE) database
    • K. Higo, Y. Ugawa, and M. Iwamoto et al. Plant cis-acting regulatory DNA elements (PLACE) database Nucleic Acids Res. 27 1999 297 300
    • (1999) Nucleic Acids Res. , vol.27 , pp. 297-300
    • Higo, K.1    Ugawa, Y.2    Iwamoto, M.3
  • 29
    • 0035165581 scopus 로고    scopus 로고
    • The TIGR Gene Indices: Analysis of gene transcript sequences in highly sampled eukaryotic species
    • J. Quackenbush, J. Cho, and D. Lee et al. The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species Nucleic Acids Res. 29 2001 159 164
    • (2001) Nucleic Acids Res. , vol.29 , pp. 159-164
    • Quackenbush, J.1    Cho, J.2    Lee, D.3
  • 30
    • 47749083127 scopus 로고    scopus 로고
    • The AtGenExpress hormone and chemical treatment data set: Experimental design, data evaluation, model data analysis and data access
    • H. Goda, E. Sasaki, and K. Akiyama et al. The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access Plant J. 55 2008 526 542
    • (2008) Plant J. , vol.55 , pp. 526-542
    • Goda, H.1    Sasaki, E.2    Akiyama, K.3
  • 31
    • 34247200577 scopus 로고    scopus 로고
    • The AtGenExpress global stress expression data set: Protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
    • J. Kilian, D. Whitehead, and J. Horak et al. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses Plant J. 50 2007 347 363
    • (2007) Plant J. , vol.50 , pp. 347-363
    • Kilian, J.1    Whitehead, D.2    Horak, J.3
  • 33
    • 0034328315 scopus 로고    scopus 로고
    • Caleosins: Ca2+-binding proteins associated with lipid bodies
    • H. Næsted, G.I. Frandsen, and G.Y. Jauh et al. Caleosins: Ca2+-binding proteins associated with lipid bodies Plant Mol. Biol. 44 2000 463 476
    • (2000) Plant Mol. Biol. , vol.44 , pp. 463-476
    • Næsted, H.1    Frandsen, G.I.2    Jauh, G.Y.3
  • 34
    • 77649191491 scopus 로고    scopus 로고
    • Different effects on triacylglycerol packaging to oil bodies in transgenic rice seeds by specifically eliminating one of their two oleosin isoforms
    • Y.Y. Wu, Y.R. Chou, and C.S. Wang et al. Different effects on triacylglycerol packaging to oil bodies in transgenic rice seeds by specifically eliminating one of their two oleosin isoforms Plant Physiol. Biochem. 48 2010 81 89
    • (2010) Plant Physiol. Biochem. , vol.48 , pp. 81-89
    • Wu, Y.Y.1    Chou, Y.R.2    Wang, C.S.3
  • 35
    • 0037313579 scopus 로고    scopus 로고
    • A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
    • G. Blanc, K. Hokamp, and K.H. Wolfe A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome Genome Res. 13 2003 137 144
    • (2003) Genome Res. , vol.13 , pp. 137-144
    • Blanc, G.1    Hokamp, K.2    Wolfe, K.H.3
  • 36
    • 0033804889 scopus 로고    scopus 로고
    • Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)
    • M.A. Koch, B. Haubold, and T. Mitchell-Olds Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae) Mol. Biol. Evol. 17 2000 1483 1498
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1483-1498
    • Koch, M.A.1    Haubold, B.2    Mitchell-Olds, T.3
  • 37
    • 0029394940 scopus 로고
    • MYB.Ph3 transcription factor from Petunia hybrida induces similar DNA-bending/distortions on its two types of binding site
    • R. Solano, C. Nieto, and J. Paz-Ares MYB.Ph3 transcription factor from Petunia hybrida induces similar DNA-bending/distortions on its two types of binding site Plant J. 8 1995 673 682
    • (1995) Plant J. , vol.8 , pp. 673-682
    • Solano, R.1    Nieto, C.2    Paz-Ares, J.3
  • 38
    • 0028173692 scopus 로고
    • The myb-homologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosynthetic gene subset
    • E. Grotewold, B.J. Drummond, and B. Bowen et al. The myb-homologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosynthetic gene subset Cell 76 1994 543 553
    • (1994) Cell , vol.76 , pp. 543-553
    • Grotewold, E.1    Drummond, B.J.2    Bowen, B.3
  • 39
    • 0142245411 scopus 로고    scopus 로고
    • Flavonoid function and activity to plants and other organisms
    • T. Iwashina Flavonoid function and activity to plants and other organisms Uchu Seibutsu Kagaku 17 2003 24 44
    • (2003) Uchu Seibutsu Kagaku , vol.17 , pp. 24-44
    • Iwashina, T.1
  • 40
    • 0026112115 scopus 로고
    • Silencer region of a chalcone synthase promoter contains multiple binding sites for a factor, SBF-1, closely related to GT-1
    • M.A. Lawton, S.M. Dean, and M. Dron et al. Silencer region of a chalcone synthase promoter contains multiple binding sites for a factor, SBF-1, closely related to GT-1 Plant Mol. Biol. 16 1991 235 249
    • (1991) Plant Mol. Biol. , vol.16 , pp. 235-249
    • Lawton, M.A.1    Dean, S.M.2    Dron, M.3
  • 41
    • 0032971627 scopus 로고    scopus 로고
    • Regulatory mechanism of plant gene transcription by GT-elements and GT-factors
    • D.X. Zhou Regulatory mechanism of plant gene transcription by GT-elements and GT-factors Trends Plant Sci. 4 1999 210 214
    • (1999) Trends Plant Sci. , vol.4 , pp. 210-214
    • Zhou, D.X.1
  • 42
    • 0030482710 scopus 로고    scopus 로고
    • Calcium and cGMP target distinct phytochrome-responsive elements
    • Y. Wu, K. Hiratsuka, and G. Neuhaus et al. Calcium and cGMP target distinct phytochrome-responsive elements Plant J. 10 1996 1149 1154
    • (1996) Plant J. , vol.10 , pp. 1149-1154
    • Wu, Y.1    Hiratsuka, K.2    Neuhaus, G.3
  • 43
    • 84866902488 scopus 로고    scopus 로고
    • Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon
    • G. Monke, M. Seifert, and J. Keilwagen et al. Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon Nucleic Acids Res. 40 2012 8240 8254
    • (2012) Nucleic Acids Res. , vol.40 , pp. 8240-8254
    • Monke, G.1    Seifert, M.2    Keilwagen, J.3
  • 44
    • 84896305522 scopus 로고    scopus 로고
    • Wrinkled 1 (WRI1) homologs, AP2-type transcription factors involving master regulation of seed storage oil synthesis in castor bean (Ricinus communis L.)
    • D. Tajima, A. Kaneko, and M. Sakamoto et al. Wrinkled 1 (WRI1) homologs, AP2-type transcription factors involving master regulation of seed storage oil synthesis in castor bean (Ricinus communis L.) Am. J. Plant Sci. 4 2013 333 339
    • (2013) Am. J. Plant Sci. , vol.4 , pp. 333-339
    • Tajima, D.1    Kaneko, A.2    Sakamoto, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.