-
1
-
-
79960976768
-
UniProt knowledgebase: A hub of integrated protein data
-
Magrane, M. and UniProt Consortium. (2011) UniProt Knowledgebase: a hub of integrated protein data. Database, 2011, bar009.
-
(2011)
Database
, vol.2011
-
-
Magrane, M.1
-
2
-
-
84859727275
-
The mouse genome database (MGD): Comprehensive resource for genetics and genomics of the laboratory mouse
-
Eppig, J.T., Blake, J.A., Bult, C.J. et al. (2011) The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse. Nucleic Acids Res., 40, D881-D886.
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. D881-D886
-
-
Eppig, J.T.1
Blake, J.A.2
Bult, C.J.3
-
3
-
-
84858588614
-
Saccharomyces genome database: The genomics resource of budding yeast
-
Cherry, J.M., Hong, E.L., Amundsen, C. et al. (2011) Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res., 40, D700-D705.
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. D700-D705
-
-
Cherry, J.M.1
Hong, E.L.2
Amundsen, C.3
-
4
-
-
84860332776
-
FlyBase 101 - The basics of navigating FlyBase
-
McQuilton, P., St. Pierre, S.E., Thurmond, J. et al. (2011) FlyBase 101 - the basics of navigating FlyBase. Nucleic Acids Res., 40, D706-D714.
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. D706-D714
-
-
McQuilton, P.1
St Pierre, S.E.2
Thurmond, J.3
-
5
-
-
75549084124
-
WormBase: A comprehensive resource for nematode research
-
Harris, T.W., Antoshechkin, I., Bieri, T. et al. (2009) WormBase: a comprehensive resource for nematode research. Nucleic Acids Res., 38, D463-D467.
-
(2009)
Nucleic Acids Res.
, vol.38
, pp. D463-D467
-
-
Harris, T.W.1
Antoshechkin, I.2
Bieri, T.3
-
6
-
-
0034280113
-
Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing
-
Simpson, J.C., Wellenreuther, R., Poustka, A. et al. (2000) Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. EMBO Rep., 1, 287-292.
-
(2000)
EMBO Rep.
, vol.1
, pp. 287-292
-
-
Simpson, J.C.1
Wellenreuther, R.2
Poustka, A.3
-
7
-
-
0035799654
-
Microarrays of cells expressing defined cDNAs
-
Ziauddin, J. and Sabatini, D.M. (2001) Microarrays of cells expressing defined cDNAs. Nature, 411, 107-110.
-
(2001)
Nature
, vol.411
, pp. 107-110
-
-
Ziauddin, J.1
Sabatini, D.M.2
-
8
-
-
0037338277
-
A genetic approach to identifying mitochondrial proteins
-
Ozawa, T., Sako, Y., Sato, M. et al. (2003) A genetic approach to identifying mitochondrial proteins. Nat. Biotechnol., 21, 287-293.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 287-293
-
-
Ozawa, T.1
Sako, Y.2
Sato, M.3
-
9
-
-
0037039159
-
Directed proteomic analysis of the human nucleolus
-
Andersen, J.S., Lyon, C.E., Fox, A.H. et al. (2002) Directed proteomic analysis of the human nucleolus. Curr. Biol., 12, 1-11.
-
(2002)
Curr. Biol.
, vol.12
, pp. 1-11
-
-
Andersen, J.S.1
Lyon, C.E.2
Fox, A.H.3
-
10
-
-
0035895890
-
Proteomics characterization of abundant golgi membrane proteins
-
Bell, A.W., Ward, M.A., Blackstock, W.P. et al. (2001) Proteomics characterization of abundant golgi membrane proteins. J. Biol. Chem., 276, 5152-5165.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 5152-5165
-
-
Bell, A.W.1
Ward, M.A.2
Blackstock, W.P.3
-
11
-
-
58149475699
-
Conservation of the protein composition and electron microscopy structure of drosophila melanogaster and human spliceosomal complexes
-
Herold, N., Will, C.L., Wolf, E. et al. (2009) Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human Spliceosomal complexes. Mol. Cell. Biol., 29, 281-301.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 281-301
-
-
Herold, N.1
Will, C.L.2
Wolf, E.3
-
12
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh, W.-K., Falvo, J.V., Gerke, L.C. et al. (2003) Global analysis of protein localization in budding yeast. Nature, 425, 686-691.
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.-K.1
Falvo, J.V.2
Gerke, L.C.3
-
13
-
-
0037087575
-
Subcellular localization of the yeast proteome
-
Kumar, A., Agarwal, S., Heyman, J.A. et al. (2002) Subcellular localization of the yeast proteome. Genes Dev., 16, 707-719.
-
(2002)
Genes Dev.
, vol.16
, pp. 707-719
-
-
Kumar, A.1
Agarwal, S.2
Heyman, J.A.3
-
14
-
-
46349103594
-
A mitochondrial protein compendium elucidates complex I disease biology
-
Pagliarini, D.J., Calvo, S.E., Chang, B. et al. (2008) A mitochondrial protein compendium elucidates complex I disease biology. Cell, 134, 112-123.
-
(2008)
Cell
, vol.134
, pp. 112-123
-
-
Pagliarini, D.J.1
Calvo, S.E.2
Chang, B.3
-
15
-
-
78650034777
-
Towards a knowledge-based human protein atlas
-
Uhlen, M., Oksvold, P., Fagerberg, L. et al. (2010) Towards a knowledge-based Human Protein Atlas. Nat. Biotechnol., 28, 1248-1250.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1248-1250
-
-
Uhlen, M.1
Oksvold, P.2
Fagerberg, L.3
-
16
-
-
48449088232
-
PolySearch: A web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites
-
Cheng, D., Knox, C., Young, N. et al. (2008) PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites. Nucleic Acids Res., 36, W399-W405.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W399-W405
-
-
Cheng, D.1
Knox, C.2
Young, N.3
-
17
-
-
14044254746
-
Textpresso: An ontology-based information retrieval and extraction system for biological literature
-
Müller, H.-M., Kenny, E.E. and Sternberg, P.W. (2004) Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol., 2, e309.
-
(2004)
PLoS Biol.
, vol.2
, pp. e309
-
-
Müller, H.-M.1
Kenny, E.E.2
Sternberg, P.W.3
-
18
-
-
84876468442
-
Text mining in the biocuration workflow: Applications for literature curation at WormBase, dictyBase and TAIR
-
van Auken, K., Fey, P., Berardini, T.Z. et al. (2012) Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR. Database, 2012, bas040.
-
(2012)
Database
, vol.2012
-
-
Van Auken, K.1
Fey, P.2
Berardini, T.Z.3
-
19
-
-
78449279166
-
Prediction of subcellular locations of proteins: Where to proceed?
-
Imai, K. and Nakai, K. (2010) Prediction of subcellular locations of proteins: where to proceed? Proteomics, 10, 3970-3983.
-
(2010)
Proteomics
, vol.10
, pp. 3970-3983
-
-
Imai, K.1
Nakai, K.2
-
20
-
-
33747872590
-
BaCelLo: A balanced subcellular localization predictor
-
Pierleoni, A., Martelli, P.L., Fariselli, P. et al. (2006) BaCelLo: a balanced subcellular localization predictor. Bioinformatics, 22, e408-e416.
-
(2006)
Bioinformatics
, vol.22
, pp. e408-e416
-
-
Pierleoni, A.1
Martelli, P.L.2
Fariselli, P.3
-
21
-
-
84866461910
-
LocTree2 predicts localization for all domains of life
-
Goldberg, T., Hamp, T. and Rost, B. (2012) LocTree2 predicts localization for all domains of life. Bioinformatics, 28, i458-i465.
-
(2012)
Bioinformatics
, vol.28
, pp. i458-i465
-
-
Goldberg, T.1
Hamp, T.2
Rost, B.3
-
22
-
-
0030624540
-
Better prediction of protein cellular localization sites with the k nearest neighbors classifier
-
Horton, P. and Nakai, K. (1997) Better prediction of protein cellular localization sites with the k nearest neighbors classifier. Proc. Int. Conf. Intell. Syst. Mol. Biol., 5, 147-152.
-
(1997)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.5
, pp. 147-152
-
-
Horton, P.1
Nakai, K.2
-
23
-
-
77952811130
-
Going from where to why - Interpretable prediction of protein subcellular localization
-
Briesemeister, S., Rahnenführer, J. and Kohlbacher, O. (2010) Going from where to why - interpretable prediction of protein subcellular localization. Bioinformatics, 26, 1232-1238.
-
(2010)
Bioinformatics
, vol.26
, pp. 1232-1238
-
-
Briesemeister, S.1
Rahnenführer, J.2
Kohlbacher, O.3
-
24
-
-
77954274687
-
YLoc - An interpretable web server for predicting subcellular localization
-
Briesemeister, S., Rahnenfuhrer, J. and Kohlbacher, O. (2010) YLoc-an interpretable web server for predicting subcellular localization. Nucleic Acids Res., 38, W497-W502.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W497-W502
-
-
Briesemeister, S.1
Rahnenfuhrer, J.2
Kohlbacher, O.3
-
25
-
-
0345864026
-
DBSubLoc: Database of protein subcellular localization
-
Guo, T., Hua, S., Ji, X. et al. (2004) DBSubLoc: database of protein subcellular localization. Nucleic Acids Res., 32, D122-D124.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D122-D124
-
-
Guo, T.1
Hua, S.2
Ji, X.3
-
26
-
-
33846093379
-
ESLDB: Eukaryotic subcellular localization database
-
Pierleoni, A., Martelli, P.L., Fariselli, P. et al. (2007) eSLDB: eukaryotic subcellular localization database. Nucleic Acids Res., 35, D208-D212.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D208-D212
-
-
Pierleoni, A.1
Martelli, P.L.2
Fariselli, P.3
-
27
-
-
38549141104
-
LOCATE: A mammalian protein subcellular localization database
-
Sprenger, J., Lynn Fink, J., Karunaratne, S. et al. (2007) LOCATE: a mammalian protein subcellular localization database. Nucleic Acids Res., 36, D230-D233.
-
(2007)
Nucleic Acids Res.
, vol.36
, pp. D230-D233
-
-
Sprenger, J.1
Lynn Fink, J.2
Karunaratne, S.3
-
28
-
-
78651301769
-
LocDB: Experimental annotations of localization for homo sapiens and arabidopsis thaliana
-
Rastogi, S. and Rost, B. (2010) LocDB: experimental annotations of localization for Homo sapiens and Arabidopsis thaliana. Nucleic Acids Res., 39, D230-D234.
-
(2010)
Nucleic Acids Res.
, vol.39
, pp. D230-D234
-
-
Rastogi, S.1
Rost, B.2
-
29
-
-
84876544295
-
SUBA3: A database for integrating experimentation and prediction to define the SUBcellular location of proteins in arabidopsis
-
Tanz, S.K., Castleden, I., Hooper, C.M. et al. (2012) SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res., 41, D1185-D1191.
-
(2012)
Nucleic Acids Res.
, vol.41
, pp. D1185-D1191
-
-
Tanz, S.K.1
Castleden, I.2
Hooper, C.M.3
-
30
-
-
84876515907
-
STRING v9.1: Protein-protein interaction networks, with increased coverage and integration
-
Franceschini, A., Szklarczyk, D., Frankild, S. et al. (2013) STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res., 41, D808-D815.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D808-D815
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
-
31
-
-
84875391572
-
Ensembl 2013
-
Flicek, P., Ahmed, I., Amode, M.R. et al. (2012) Ensembl 2013. Nucleic Acids Res., 41, D48-D55.
-
(2012)
Nucleic Acids Res.
, vol.41
, pp. D48-D55
-
-
Flicek, P.1
Ahmed, I.2
Amode, M.R.3
-
32
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Ashburner, M., Ball, C.A., Blake, J.A. et al. (2000) Gene Ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
-
33
-
-
0346801873
-
The gene ontology (GO) database and informatics resource
-
Harris, M.A., Clark, J., Ireland, A. et al. (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res., 32, D258-D261.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D258-D261
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
-
34
-
-
63349096475
-
The UniProtKB/Swiss-prot knowledgebase and its plant proteome annotation program
-
Schneider, M., Lane, L., Boutet, E. et al. (2009) The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program. J. Proteomics, 72, 567-573.
-
(2009)
J. Proteomics
, vol.72
, pp. 567-573
-
-
Schneider, M.1
Lane, L.2
Boutet, E.3
-
35
-
-
58349111875
-
AmiGO: Online access to ontology and annotation data
-
Carbon, S., Ireland, A., Mungall, C.J. et al. (2009) AmiGO: online access to ontology and annotation data. Bioinformatics, 25, 288-289.
-
(2009)
Bioinformatics
, vol.25
, pp. 288-289
-
-
Carbon, S.1
Ireland, A.2
Mungall, C.J.3
-
36
-
-
84870595917
-
Automated analysis and reannotation of subcellular locations in confocal images from the human protein atlas
-
Li, J., Newberg, J.Y., Uhlén, M. et al. (2012) Automated analysis and reannotation of subcellular locations in confocal images from the human protein atlas. PLoS One, 7, e50514.
-
(2012)
PLoS One
, vol.7
-
-
Li, J.1
Newberg, J.Y.2
Uhlén, M.3
-
37
-
-
34547560275
-
Wolf PSORT: Protein localization predictor
-
Horton, P., Park, K.-J., Obayashi, T. et al. (2007) WoLF PSORT: protein localization predictor. Nucleic Acids Res., 35, W585-W587.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W585-W587
-
-
Horton, P.1
Park, K.-J.2
Obayashi, T.3
-
38
-
-
84863693531
-
Quality of computationally inferred gene ontology annotations
-
Škunca, N., Altenhoff, A. and Dessimoz, C. (2012) Quality of computationally inferred Gene Ontology annotations. PLoS Comput. Biol., 8, e1002533.
-
(2012)
PLoS Comput. Biol.
, vol.8
-
-
Škunca, N.1
Altenhoff, A.2
Dessimoz, C.3
-
39
-
-
0033756012
-
Nucleocytoplasmic protein traffic and its significance to cell function
-
Yoneda, Y. (2000) Nucleocytoplasmic protein traffic and its significance to cell function. Genes Cells, 5, 777-787.
-
(2000)
Genes Cells
, vol.5
, pp. 777-787
-
-
Yoneda, Y.1
-
40
-
-
77956182563
-
Actin cytoskeleton dynamics and the cell division cycle
-
Heng, Y.-W. and Koh, C.-G. (2010) Actin cytoskeleton dynamics and the cell division cycle. Int. J. Biochem. Cell Biol., 42, 1622-1633.
-
(2010)
Int. J. Biochem. Cell Biol.
, vol.42
, pp. 1622-1633
-
-
Heng, Y.-W.1
Koh, C.-G.2
-
41
-
-
16244397057
-
Absence of peroxisomes in mouse hepatocytes causes mitochondrial and ER abnormalities
-
Dirkx, R., Vanhorebeek, I., Martens, K. et al. (2005) Absence of peroxisomes in mouse hepatocytes causes mitochondrial and ER abnormalities. Hepatology, 41, 868-878.
-
(2005)
Hepatology
, vol.41
, pp. 868-878
-
-
Dirkx, R.1
Vanhorebeek, I.2
Martens, K.3
-
42
-
-
84864046701
-
Functions of plasmalogen lipids in health and disease
-
Braverman, N.E. and Moser, A.B. (2012) Functions of plasmalogen lipids in health and disease. Biochim. Biophys. Acta, 1822, 1442-1452.
-
(2012)
Biochim. Biophys. Acta
, vol.1822
, pp. 1442-1452
-
-
Braverman, N.E.1
Moser, A.B.2
-
43
-
-
64449084971
-
Organelle dynamics and dysfunction: A closer link between peroxisomes and mitochondria
-
Camões, F., Bonekamp, N.A., Delille, H.K. et al. (2009) Organelle dynamics and dysfunction: a closer link between peroxisomes and mitochondria. J. Inherit. Metab. Dis., 32, 163-180.
-
(2009)
J. Inherit. Metab. Dis.
, vol.32
, pp. 163-180
-
-
Camões, F.1
Bonekamp, N.A.2
Delille, H.K.3
-
44
-
-
35848932285
-
Mitochondria and peroxisomes: Are the "big brother" and the "little sister" closer than assumed?
-
Schrader, M. and Yoon, Y. (2007) Mitochondria and peroxisomes: are the "big brother" and the "little sister" closer than assumed? BioEssays, 29, 1105-1114.
-
(2007)
BioEssays
, vol.29
, pp. 1105-1114
-
-
Schrader, M.1
Yoon, Y.2
-
45
-
-
84862874864
-
The peroxisome: An update on mysteries
-
Islinger, M., Grille, S., Fahimi, H.D. et al. (2012) The peroxisome: an update on mysteries. Histochem. Cell Biol., 137, 547-574.
-
(2012)
Histochem. Cell Biol.
, vol.137
, pp. 547-574
-
-
Islinger, M.1
Grille, S.2
Fahimi, H.D.3
-
46
-
-
0035145332
-
Antigen processing in the endocytic compartment
-
Watts, C. (2001) Antigen processing in the endocytic compartment. Curr. Opin. Immunol., 13, 26-31.
-
(2001)
Curr. Opin. Immunol.
, vol.13
, pp. 26-31
-
-
Watts, C.1
-
47
-
-
82755189571
-
The endosome-lysosome pathway and information generation in the immune system
-
Watts, C. (2012) The endosome-lysosome pathway and information generation in the immune system. Biochim. Biophys. Acta, 1824, 14-21.
-
(2012)
Biochim. Biophys. Acta
, vol.1824
, pp. 14-21
-
-
Watts, C.1
-
48
-
-
0034614647
-
The road taken: Past and future foundations of membrane traffic
-
Mellman, I. and Warren, G. (2000) The road taken: past and future foundations of membrane traffic. Cell, 100, 99-112.
-
(2000)
Cell
, vol.100
, pp. 99-112
-
-
Mellman, I.1
Warren, G.2
-
49
-
-
13444263549
-
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling
-
Le Roy, C. and Wrana, J.L. (2005) Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling. Nat. Rev. Mol. Cell Biol., 6, 112-126.
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 112-126
-
-
Le Roy, C.1
Wrana, J.L.2
-
50
-
-
84879327718
-
Contribution of antibody-based protein profiling to the human chromosome-centric proteome project (C-HPP)
-
Fagerberg, L., Oksvold, P., Skogs, M. et al. (2013) Contribution of antibody-based protein profiling to the human Chromosome-centric Proteome Project (C-HPP). J. Proteome Res., 12, 2439-2448.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 2439-2448
-
-
Fagerberg, L.1
Oksvold, P.2
Skogs, M.3
-
51
-
-
84879162734
-
The SPECIES and ORGANISMS resources for fast and accurate identification of taxonomic names in text
-
Pafilis, E., Frankild, S.P., Fanini, L. et al. (2013) The SPECIES and ORGANISMS resources for fast and accurate identification of taxonomic names in text. PLoS One, 8, e65390.
-
(2013)
PLoS One
, vol.8
-
-
Pafilis, E.1
Frankild, S.P.2
Fanini, L.3
-
52
-
-
84987680445
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B Methodol., 57, 289-300.
-
(1995)
J. R. Stat. Soc. B Methodol.
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
|