Laser capture microdissection coupled with on-column extraction LC-MS n Enables lipidomics of fluorescently labeled drosophila neurons

Analytical Chemistry

Volumn 86, Issue 11, 2014, Pages 5345-5352

  Hebbar, Sarita ^a,c   Schulz, Wolf Dieter ^b   Sauer, Ulrich ^b   Schwudke, Dominik ^a,d  

^a TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

^b CARL ZEISS SMT AG   (Germany)

^c MAX PLANCK INSTITUTE OF MOLECULAR CELL BIOLOGY AND GENETICS   (Germany)

^d RESEARCH CENTER BORSTEL   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EQUIVALENCE CLASSES; EXTRACTION; FLUORESCENCE MICROSCOPY; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MICRODISSECTION; TISSUE;

DROSOPHILA MELANOGASTER; EXTRACTION EFFICIENCIES; LASER CAPTURE MICRODISSECTION; LIMIT OF QUANTITATIONS; MEMBRANE LIPIDS; REGIONS OF INTEREST; REVERSED-PHASE COLUMNS; SPATIAL RESOLUTION;

TISSUE ENGINEERING;

LIPID;

ANIMAL; CHEMISTRY; DROSOPHILA MELANOGASTER; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; LASER; LASER CAPTURE MICRODISSECTION; MASS SPECTROMETRY; NERVE CELL; PROCEDURES;

ANIMALS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DROSOPHILA MELANOGASTER; LASER CAPTURE MICRODISSECTION; LASERS; LIPIDS; MASS SPECTROMETRY; NEURONS;

EID: 84901751149     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac500276r     Document Type: Article

References (46)

1. Jackson, S. N.; Wang, H. Y.; Woods, A. S. J. Am. Soc. Mass Spectrom. 2007, 18, 17-26
2. Jackson, S. N.; Ugarov, M.; Egan, T.; Post, J. D.; Langlais, D.; Albert Schultz, J.; Woods, A. S. J. Mass Spectrom 2007, 42, 1093-1098
3. Hankin, J. A.; Farias, S. E.; Barkley, R. M.; Heidenreich, K.; Frey, L. C.; Hamazaki, K.; Kim, H. Y.; Murphy, R. C. J. Am. Soc. Mass Spectrom. 2011, 22, 1014-1021
4. Cornett, D. S.; Reyzer, M. L.; Chaurand, P.; Caprioli, R. M. Nat. Methods 2007, 4, 828-833
5. Murphy, R. C.; Hankin, J. A.; Barkley, R. M. J. Lipid Res. 2009, 50 (Suppl) S317-322
6. Deeley, J. M.; Hankin, J. A.; Friedrich, M. G.; Murphy, R. C.; Truscott, R. J.; Mitchell, T. W.; Blanksby, S. J. J. Lipid Res. 2010, 51, 2753-2760
7. Zavalin, A.; Todd, E. M.; Rawhouser, P. D.; Yang, J.; Norris, J. L.; Caprioli, R. M. J. Mass Spectrom. 2012, 47, 1473-1481
8. Schober, Y.; Guenther, S.; Spengler, B.; Rompp, A. Anal. Chem. 2012, 84, 6293-6297
9. Stauber, J. Bioanalysis 2012, 4, 2095-2098
10. Rompp, A.; Spengler, B. Histochem. Cell Biol. 2013, 139, 759-783
11. Paschke, C.; Leisner, A.; Hester, A.; Maass, K.; Guenther, S.; Bouschen, W.; Spengler, B. J. Am. Soc. Mass Spectrom. 2013, 24, 1296-1306
12. Weigert, R.; Porat-Shliom, N.; Amornphimoltham, P. J. Cell Biol. 2013, 201, 969-979
13. Guillot, C.; Lecuit, T. Science 2013, 340, 1185-1189
14. Nagerl, U. V.; Bonhoeffer, T. J. Neurosci. 2010, 30, 9341-9346
15. Johnson, W. L.; Straight, A. F. Methods Cell Biol. 2013, 114, 99-123
16. Ghosh, S.; Saha, S.; Goswami, D.; Bilgrami, S.; Mayor, S. Methods Enzymol. 2012, 505, 291-327
17. Vogel, A.; Horneffer, V.; Lorenz, K.; Linz, N.; Huttmann, G.; Gebert, A. Methods Cell Biol. 2007, 82, 153-205
18. VanMeter, A. J.; Rodriguez, A. S.; Bowman, E. D.; Jen, J.; Harris, C. C.; Deng, J.; Calvert, V. S.; Silvestri, A.; Fredolini, C.; Chandhoke, V.; Petricoin, E. F., 3rd; Liotta, L. A.; Espina, V. Mol. Cell Proteomics 2008, 7, 1902-1924
19. Roberts, E.; Charboneau, L.; Espina, V.; Liotta, L.; Petricoin, E.; Dreher, K. J. Toxicol. Environ. Health A 2004, 67, 851-861
20. Ladanyi, A.; Sipos, F.; Szoke, D.; Galamb, O.; Molnar, B.; Tulassay, Z. Cytometry A 2006, 69, 947-960
21. Golubeva, Y.; Salcedo, R.; Mueller, C.; Liotta, L. A.; Espina, V. Methods Mol. Biol. 2013, 931, 213-257
22. Gallagher, R. I.; Blakely, S. R.; Liotta, L. A.; Espina, V. Methods Mol. Biol. 2012, 823, 157-178
23. Espina, V.; Heiby, M.; Pierobon, M.; Liotta, L. A. Expert Rev. Mol. Diagn. 2007, 7, 647-657
24. Schiebold, S.; Tschiersch, H.; Borisjuk, L.; Heinzel, N.; Radchuk, R.; Rolletschek, H. Plant Methods 2011, 7, 19
25. Gaudin, M.; Panchal, M.; Auzeil, N.; Duyckaerts, C.; Brunelle, A.; Laprevote, O.; Touboul, D. Bioanalysis 2012, 4, 2153-5159
26. Panchal, M.; Gaudin, M.; Lazar, A. N.; Salvati, E.; Rivals, I.; Ayciriex, S.; Dauphinot, L.; Dargere, D.; Auzeil, N.; Masserini, M.; Laprevote, O.; Duyckaerts, C. Neurobiol. Dis. 2014, 65, 193-201
27. Panchal, M.; Loeper, J.; Cossec, J. C.; Perruchini, C.; Lazar, A.; Pompon, D.; Duyckaerts, C. J. Lipid Res. 2010, 51, 598-605
28. Brand, A. H.; Perrimon, N. Development 1993, 118, 401-415
29. Zhang, Y. Q.; Rodesch, C. K.; Broadie, K. Genesis 2002, 34, 142-145
30. Estes, P. S.; Roos, J.; van der Bliek, A.; Kelly, R. B.; Krishnan, K. S.; Ramaswami, M. J. Neurosci. 1996, 16, 5443-5456
31. Schneider, C. A.; Rasband, W. S.; Eliceiri, K. W. Nat. Methods 2012, 9, 671-675
32. Herzog, R.; Schwudke, D.; Schuhmann, K.; Sampaio, J. L.; Bornstein, S. R.; Schroeder, M.; Shevchenko, A. Genome Biol. 2011, 12, R8
33. Guan, X. L.; Cestra, G.; Shui, G.; Kuhrs, A.; Schittenhelm, R. B.; Hafen, E.; van der Goot, F. G.; Robinett, C. C.; Gatti, M.; Gonzalez-Gaitan, M.; Wenk, M. R. Dev. Cell 2013, 24, 98-111
34. Carvalho, M.; Sampaio, J. L.; Palm, W.; Brankatschk, M.; Eaton, S.; Shevchenko, A. Mol. Syst. Biol. 2012, 8, 600
35. Strandskov, H. H. Annu. Rev. Physiol. 1942, 4, 49-66
36. Braakman, R. B.; Luider, T. M.; Martens, J. W.; Foekens, J. A.; Umar, A. Methods Mol. Biol. 2011, 755, 143-154
37. Schwudke, D.; Schuhmann, K.; Herzog, R.; Bornstein, S. R.; Shevchenko, A. Cold Spring Harbor Perspect. Biol. 2011, 3 a004614
38. Ogiso, H.; Suzuki, T.; Taguchi, R. Anal. Biochem. 2008, 375, 124-131
39. Stocker, R. F.; Heimbeck, G.; Gendre, N.; de Belle, J. S. J. Neurobiol. 1997, 32, 443-456
40. Das, A.; Sen, S.; Lichtneckert, R.; Okada, R.; Ito, K.; Rodrigues, V.; Reichert, H. Neural Dev. 2008, 3, 33
41. Jefferis, G. S.; Marin, E. C.; Stocker, R. F.; Luo, L. Nature 2001, 414, 204-208
42. Hartenstein, V.; Spindler, S.; Pereanu, W.; Fung, S. Adv. Exp. Med. Biol. 2008, 628, 1-31
43. Ito, K.; Shinomiya, K.; Ito, M.; Armstrong, J. D.; Boyan, G.; Hartenstein, V.; Harzsch, S.; Heisenberg, M.; Homberg, U.; Jenett, A.; Keshishian, H.; Restifo, L. L.; Rossler, W.; Simpson, J. H.; Strausfeld, N. J.; Strauss, R.; Vosshall, L. B.; Insect Brain Name Working, G. Neuron 2014, 81, 755-765
44. Yamada, T.; Uchikata, T.; Sakamoto, S.; Yokoi, Y.; Fukusaki, E.; Bamba, T. J. Chromatogr., A 2013, 1292, 211-218
45. Schuhmann, K.; Herzog, R.; Schwudke, D.; Metelmann-Strupat, W.; Bornstein, S. R.; Shevchenko, A. Anal. Chem. 2011, 83, 5480-5487
46. Schuhmann, K.; Almeida, R.; Baumert, M.; Herzog, R.; Bornstein, S. R.; Shevchenko, A. J. Mass Spectrom. 2012, 47, 96-104