Proteome responses to nitrate in bioethanol production contaminant Dekkera bruxellensis

Journal of Proteomics

Volumn 104, Issue , 2014, Pages 104-111

  Neto, Adauto Gomes Barbosa ^a   Pestana Calsa, Maria Clara ^a,b   de Morais, Marcos Antonio ^a   Calsa, Tercilio ^a  

^a FEDERAL UNIVERSITY OF PERNAMBUCO   (Brazil)

^b Mauricio de Nassau University   (Brazil)

Author keywords

2 DE; Nitrogen source; Proteomics; Yeast

Indexed keywords

ACTIN; ALCOHOL DEHYDROGENASE; AMMONIA; ENOLASE; FRUCTOSE BISPHOSPHATE ALDOLASE; GLYCERALDEHYDE 3 PHOSPHATE; GUANINE NUCLEOTIDE BINDING PROTEIN BETA SUBUNIT; HEAT SHOCK PROTEIN; INORGANIC PYROPHOSPHATASE; NITRATE; NITROGEN; NUCLEOSIDE DIPHOSPHATE KINASE; PHOSPHOGLUCONATE DEHYDROGENASE; PHOSPHOGLYCERATE KINASE; PYRUVATE KINASE; RIBOSOME PROTEIN; SPERMIDINE SYNTHASE; ALCOHOL; FUNGAL PROTEIN; NITRIC ACID DERIVATIVE; PROTEOME;

ALCOHOL PRODUCTION; ARTICLE; CARBOHYDRATE METABOLISM; CATABOLITE REPRESSION; CELL MEMBRANE; CELL SUSPENSION; DEKKERA; DEKKERA BRUXELLENSIS; FERMENTATION; FUNGUS GROWTH; GENE EXPRESSION; IMAGE ANALYSIS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NITRATE METABOLISM; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEOMICS; TANDEM MASS SPECTROMETRY; BIOREACTOR; GENE EXPRESSION REGULATION; METABOLISM; MICROBIOLOGY; PHYSIOLOGY; SACCHAROMYCES CEREVISIAE;

DEKKERA BRUXELLENSIS; SACCHAROMYCES CEREVISIAE;

BIOREACTORS; DEKKERA; ETHANOL; FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; NITRATES; PROTEOME; SACCHAROMYCES CEREVISIAE;

EID: 84901604447     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2014.03.014     Document Type: Article

References (28)

1. Beckner M., Ivey M.L., Phister T.G. Microbial contamination of fuel ethanol fermentations. Lett Appl Microbiol 2011, 53(4):387-394.
2. de Souza Liberal A.T., Basílio A.C., do Monte Resende A., Brasileiro B.T., da Silva-Filho E.A., de Morais J.O., et al. Identification of Dekkera bruxellensis as a major contaminant yeast in continuous fuel ethanol fermentation. J Appl Microbiol 2007, 102(2):538-547.
3. de Barros Pita W., Leite F.C., de Souza Liberal A.T., Simões D.A., de Morais M.A. The ability to use nitrate confers advantage to Dekkera bruxellensis over Saccharomyces cerevisiae and can explain its adaptation to industrial fermentation processes. Antonie Van Leeuwenhoek 2011, 100(1):99-107.
4. Rossi B., Berardi E. Assimilatory nitrate reduction in Hansenula polymorpha. Yeast biotechnology: diversity and applications 2007, 307-320. T. Satyanarayana, G. Kunze (Eds.).
5. Blomqvist J., Nogué V.S., Gorwa-Grauslund M., Passoth V. Physiological requirements for growth and competitiveness of Dekkera bruxellensis under oxygen-limited or anaerobic conditions. Yeast 2012, 29(7):265-274.
6. Pereira L.F., Bassi A.P., Avansini S.H., Neto A.G., Brasileiro B.T., Ceccato-Antonini S.R., et al. The physiological characteristics of the yeast Dekkera bruxellensis in fully fermentative conditions with cell recycling and in mixed cultures with Saccharomyces cerevisiae. Antonie Van Leeuwenhoek 2012, 101(3):529-539.
7. de Barros Pita W., Tiukova I., Leite F.C., Passoth V., Simões D.A., de Morais M.A. The influence of nitrate on the physiology of the yeast Dekkera bruxellensis grown under oxygen limitation. Yeast 2013, 30(3):111-117.
8. Galafassi S., Capusoni C., Moktaduzzaman M., Compagno C. Utilization of nitrate abolishes the "Custers effect" in Dekkera bruxellensis and determines a different pattern of fermentation products. J Ind Microbiol Biotechnol 2013, 40(3-4):297-303.
9. da Silva-Filho E.A., Brito dos Santos S.K., Resende Ado M., de Morais J.O., de Morais M.A., Ardaillon Simões D. Yeast population dynamics of industrial fuel-ethanol fermentation process assessed by PCR-fingerprinting. Antonie Van Leeuwenhoek 2005, 88(1):13-23.
10. Leite F.C., Basso T.O., Pita Wde B., Gombert A.K., Simões D.A., de Morais M.A. Quantitative aerobic physiology of the yeast Dekkera bruxellensis, a major contaminant in bioethanol production plants. FEMS Yeast Res 2013, 13(1):34-43.
11. Matsuo Y., Asakawa K., Toda T., Katayama S. A rapid method for protein extraction from fission yeast. Biosci Biotechnol Biochem 2006, 70(8):1992-1994.
12. Kushnirov V.V. Rapid and reliable protein extraction from yeast. Yeast 2000, 16:857-860.
13. Nandakumar M.P., Marten M.R. Comparison of lysis methods and preparation protocols for one and two dimensional electrophoresis of Aspergillus oryzae intracellular proteins. Electrophoresis 2002, 23:2216-2222.
14. Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976, 72:248-254.
15. Pacheco C.M., Pestana-Calsa M.C., Gozzo F.C., Mansur Custodio Nogueira R.J., Menossi M., Calsa T. Differentially delayed root proteome responses to salt stress in sugar cane varieties. J Proteome Res 2013, 12(12):5681-5695.
16. Shevchenko A., Wilm M., Vorm O., Mann M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem 1996, 68(5):850-858.
17. Conesa A., Götz S., García-Gómez J.M., Terol J., Talón M., Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21(18):3674-3676.
18. de Smidt O., du Preez J.C., Albertyn J. Molecular and physiological aspects of alcohol dehydrogenases in the ethanol metabolism of Saccharomyces cerevisiae. FEMS Yeast Res 2012, 12(1):33-47.
19. Serrano-Bueno G., Hernández A., López-Lluch G., Pérez-Castiñeira J.R., Navas P., Serrano A. Inorganic pyrophosphatase defects lead to cell cycle arrest and autophagic cell death through NAD+depletion in fermenting yeast. J Biol Chem 2013, 288(18):13082-13092.
20. Gorsich S.W., Dien B.S., Nichols N.N., Slininger P.J., Liu Z.L., Skory C.D. Tolerance to furfural-induced stress is associated with pentose phosphate pathway genes ZWF1, GND1, RPE1, and TKL1 in Saccharomyces cerevisiae. Appl Microbiol Biotechnol 2006, 71(3):339-349.
21. Zhu M., Torres M.P., Kelley J.B., Dohlman H.G., Wang Y. Pheromone- and RSP5-dependent ubiquitination of the G protein beta subunit Ste4 in yeast. J Biol Chem 2011, 286(31):27147-27155.
22. Navarro-Olmos R., Kawasaki L., Domínguez-Ramírez L., Ongay-Larios L., Pérez-Molina R., Coria R. The beta subunit of the heterotrimeric G protein triggers the Kluyveromyces lactis pheromone response pathway in the absence of the gamma subunit. Mol Biol Cell 2010, 21(3):489-498.
23. Zeller C.E., Parnell S.C., Dohlman H.G. The RACK1 ortholog Asc1 functions as a G-protein beta subunit coupled to glucose responsiveness in yeast. J Biol Chem 2007, 282(34):25168-25176.
24. Wang Y., Chen W., Simpson D.M., Elion E.A. Cdc24 regulates nuclear shuttling and recruitment of the Ste5 scaffold to a heterotrimeric G protein in Saccharomyces cerevisiae. J Biol Chem 2005, 280(13):13084-13096.
25. Matynia A., Salus S.S., Sazer S. Three proteins required for early steps in the protein secretory pathway also affect nuclear envelope structure and cell cycle progression in fission yeast. J Cell Sci 2002, 115(Pt 2):421-431.
26. Suzuki T., Imanishi Y., Iwaguchi S., Kamihara T. A search for specific genes working on the process of mycelial growth in Candida tropicalis. Nippon Ishinkin Gakkai Zasshi 1998, 39(2):61-65.
27. Hyvönen M.T., Uimari A., Keinänen T.A., Heikkinen S., Pellinen R., Wahlfors T., et al. Polyamine-regulated unproductive splicing and translation of spermidine/spermine N1-acetyltransferase. RNA 2006, 12(8):1569-1582.
28. Chattopadhyay M.K., Chen W., Poy G., Cam M., Stiles D., Tabor H. Microarray studies on the genes responsive to the addition of spermidine or spermine to a Saccharomyces cerevisiae spermidine synthase mutant. Yeast 2009, 26(10):531-544.