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Volumn 11, Issue 1, 2014, Pages

Viral metagenomic analysis of feces of wild small carnivores

Author keywords

Amdovirus; Bunyavirus; Carnivore; Common gennet; Fox; Otter; Phlebovirus; Picobirnavirus; Red fox; Theilovirus; Viral metagenomics; Wild carnivore; Wildlife

Indexed keywords

ALEUTIAN MINK DISEASE VIRUS; AMERICAN MINK; ARTICLE; BUNYAVIRUS; CANIDAE; CARNIVORE; ENCEPHALOMYOCARDITIS VIRUS; EUROPEAN MINK; FECES ANALYSIS; FELIDAE; KOBUVIRUS; LUTRA LUTRA; MARTES FOINA; MARTES MARTES; MELES MELES; METAGENOMICS; MICROBIAL DIVERSITY; MURINE ENCEPHALOMYELITIS VIRUS; MUSTELA PUTORIUS; MUSTELIDAE; NONHUMAN; NUCLEOTIDE SEQUENCE; OTTER; PHLEBOVIRUS; PICOBIRNAVIRUS; VIRAL GENETICS; VIVERRIDAE; VULPES VULPES; ANIMAL; BIODIVERSITY; CARNIVORA; CLASSIFICATION; FECES; GENETICS; HIGH THROUGHPUT SEQUENCING; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; POLYMERASE CHAIN REACTION; SPAIN; VIROLOGY; VIRUS;

EID: 84901492969     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-11-89     Document Type: Article
Times cited : (60)

References (56)
  • 1
    • 84868516062 scopus 로고    scopus 로고
    • Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia
    • 10.1056/NEJMoa1211721 23075143
    • Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. Zaki AM, van Boheemen S, Bestebroer TM, Osterhaus AD, Fouchier RA, N Engl J Med 2012 367 1814 1820 10.1056/NEJMoa1211721 23075143
    • (2012) N Engl J Med , vol.367 , pp. 1814-1820
    • Zaki, A.M.1    Van Boheemen, S.2    Bestebroer, T.M.3    Osterhaus, A.D.4    Fouchier, R.A.5
  • 5
    • 84878284641 scopus 로고    scopus 로고
    • Origin and diversity of novel avian influenza A H7N9 viruses causing human infection: Phylogenetic, structural, and coalescent analyses
    • 10.1016/S0140-6736(13)60938-1 23643111
    • Origin and diversity of novel avian influenza A H7N9 viruses causing human infection: phylogenetic, structural, and coalescent analyses. Liu D, Shi W, Shi Y, Wang D, Xiao H, Li W, Bi Y, Wu Y, Li X, Yan J, Liu W, Zhao G, Yang W, Wang Y, Ma J, Shu Y, Lei F, Gao GF, Lancet 2013 381 1926 1932 10.1016/S0140-6736(13)60938-1 23643111
    • (2013) Lancet , vol.381 , pp. 1926-1932
    • Liu, D.1    Shi, W.2    Shi, Y.3    Wang, D.4    Xiao, H.5    Li, W.6    Bi, Y.7    Wu, Y.8    Li, X.9    Yan, J.10    Liu, W.11    Zhao, G.12    Yang, W.13    Wang, Y.14    Ma, J.15    Shu, Y.16    Lei, F.17    Gao, G.F.18
  • 8
    • 84861397655 scopus 로고    scopus 로고
    • Metagenomic analysis of viruses from bat fecal samples reveals many novel viruses in insectivorous bats in China
    • 10.1128/JVI.06671-11 22345464
    • Metagenomic analysis of viruses from bat fecal samples reveals many novel viruses in insectivorous bats in China. Ge X, Li Y, Yang X, Zhang H, Zhou P, Zhang Y, Shi Z, J Virol 2012 86 4620 4630 10.1128/JVI.06671-11 22345464
    • (2012) J Virol , vol.86 , pp. 4620-4630
    • Ge, X.1    Li, Y.2    Yang, X.3    Zhang, H.4    Zhou, P.5    Zhang, Y.6    Shi, Z.7
  • 10
    • 80655142520 scopus 로고    scopus 로고
    • The fecal virome of pigs on a high-density farm
    • 10.1128/JVI.05217-11 21900163
    • The fecal virome of pigs on a high-density farm. Shan T, Li L, Simmonds P, Wang C, Moeser A, Delwart E, J Virol 2011 85 11697 11708 10.1128/JVI.05217-11 21900163
    • (2011) J Virol , vol.85 , pp. 11697-11708
    • Shan, T.1    Li, L.2    Simmonds, P.3    Wang, C.4    Moeser, A.5    Delwart, E.6
  • 14
    • 84880372290 scopus 로고    scopus 로고
    • Identification of multiple novel viruses, including a parvovirus and a hepevirus, in feces of red foxes
    • 10.1128/JVI.00568-13 23616657
    • Identification of multiple novel viruses, including a parvovirus and a hepevirus, in feces of red foxes. Bodewes R, van der Giessen J, Haagmans BL, Osterhaus AD, Smits SL, J Virol 2013 87 7758 7764 10.1128/JVI.00568-13 23616657
    • (2013) J Virol , vol.87 , pp. 7758-7764
    • Bodewes, R.1    Van Der Giessen, J.2    Haagmans, B.L.3    Osterhaus, A.D.4    Smits, S.L.5
  • 16
    • 84891681779 scopus 로고    scopus 로고
    • Novel hybrid parvovirus-like virus, NIH-CQV/PHV, contaminants in silica column-based nucleic acid extraction kits
    • 10.1128/JVI.03206-13 24335290
    • Novel hybrid parvovirus-like virus, NIH-CQV/PHV, contaminants in silica column-based nucleic acid extraction kits. Smuts H, Kew M, Khan A, Korsman S, J Virol 2014 88 1398 10.1128/JVI.03206-13 24335290
    • (2014) J Virol , vol.88 , pp. 1398
    • Smuts, H.1    Kew, M.2    Khan, A.3    Korsman, S.4
  • 17
    • 84869885382 scopus 로고    scopus 로고
    • Isolation and molecular characterization of a second serotype of the encephalomyocarditis virus
    • 10.1016/j.vetmic.2012.07.006 22824255
    • Isolation and molecular characterization of a second serotype of the encephalomyocarditis virus. Philipps A, Dauber M, Groth M, Schirrmeier H, Platzer M, Krumbholz A, Wutzler P, Zell R, Vet Microbiol 2012 161 49 57 10.1016/j.vetmic.2012.07.006 22824255
    • (2012) Vet Microbiol , vol.161 , pp. 49-57
    • Philipps, A.1    Dauber, M.2    Groth, M.3    Schirrmeier, H.4    Platzer, M.5    Krumbholz, A.6    Wutzler, P.7    Zell, R.8
  • 18
    • 84870660014 scopus 로고    scopus 로고
    • Complete genome sequence of a mink calicivirus in China
    • 10.1128/JVI.02582-12 23166245
    • Complete genome sequence of a mink calicivirus in China. Yang B, Wang F, Zhang S, Xu G, Wen Y, Li J, Yang Z, Wu H, J Virol 2012 86 13835 10.1128/JVI.02582-12 23166245
    • (2012) J Virol , vol.86 , pp. 13835
    • Yang, B.1    Wang, F.2    Zhang, S.3    Xu, G.4    Wen, Y.5    Li, J.6    Yang, Z.7    Wu, H.8
  • 22
    • 84901489605 scopus 로고    scopus 로고
    • International Committee on Taxonomy of Viruses (ICTV)
    • International Committee on Taxonomy of Viruses (ICTV), Virus Taxonomy, Release 2013 Available at http://www.ictvonline.org/virusTaxonomy.asp
    • (2013) Virus Taxonomy, Release
  • 23
    • 27144467078 scopus 로고    scopus 로고
    • The genetics of the persistent infection and demyelinating disease caused by Theiler's virus
    • DOI 10.1146/annurev.micro.59.030804.121242
    • The genetics of the persistent infection and demyelinating disease caused by Theiler's virus. Brahic M, Bureau JF, Michiels T, Annu Rev Microbiol 2005 59 279 298 10.1146/annurev.micro.59.030804.121242 16153171 (Pubitemid 41507433)
    • (2005) Annual Review of Microbiology , vol.59 , pp. 279-298
    • Brahic, M.1    Bureau, J.-F.2    Michiels, T.3
  • 24
    • 0007722618 scopus 로고
    • Immunological characterization of Vilyuisk human encephalomyelitis virus
    • 10.1038/200339a0 14087883
    • Immunological characterization of Vilyuisk human encephalomyelitis virus. Casals J, Nature 1963 200 339 341 10.1038/200339a0 14087883
    • (1963) Nature , vol.200 , pp. 339-341
    • Casals, J.1
  • 25
    • 0026808583 scopus 로고
    • Nucleotide sequence identifies Vilyuisk virus as a divergent Theiler's virus
    • 10.1016/0042-6822(92)90212-8 1413519
    • Nucleotide sequence identifies Vilyuisk virus as a divergent Theiler's virus. Pritchard AE, Strom T, Lipton HL, Virology 1992 191 469 472 10.1016/0042-6822(92)90212-8 1413519
    • (1992) Virology , vol.191 , pp. 469-472
    • Pritchard, A.E.1    Strom, T.2    Lipton, H.L.3
  • 26
    • 34547630287 scopus 로고    scopus 로고
    • Discovery of a novel human picornavirus in a stool sample from a pediatric patient presenting with fever of unknown origin
    • DOI 10.1128/JCM.00174-07
    • Discovery of a novel human picornavirus in a stool sample from a pediatric patient presenting with fever of unknown origin. Jones MS, Lukashov VV, Ganac RD, Schnurr DP, J Clin Microbiol 2007 45 2144 2150 10.1128/JCM.00174-07 17460053 (Pubitemid 47203784)
    • (2007) Journal of Clinical Microbiology , vol.45 , Issue.7 , pp. 2144-2150
    • Jones, M.S.1    Lukashov, V.V.2    Ganac, R.D.3    Schnurr, D.P.4
  • 27
    • 84857098134 scopus 로고    scopus 로고
    • Saffold virus, a novel human Cardiovirus with unknown pathogenicity
    • 10.1128/JVI.06087-11 22114344
    • Saffold virus, a novel human Cardiovirus with unknown pathogenicity. Himeda T, Ohara Y, J Virol 2012 86 1292 1296 10.1128/JVI.06087-11 22114344
    • (2012) J Virol , vol.86 , pp. 1292-1296
    • Himeda, T.1    Ohara, Y.2
  • 29
    • 56449119821 scopus 로고    scopus 로고
    • Phylogenetic analysis of the species Theilovirus: Emerging murine and human pathogens
    • 10.1128/JVI.01160-08 18815294
    • Phylogenetic analysis of the species Theilovirus: emerging murine and human pathogens. Liang Z, Kumar AS, Jones MS, Knowles NJ, Lipton HL, J Virol 2008 82 11545 11554 10.1128/JVI.01160-08 18815294
    • (2008) J Virol , vol.82 , pp. 11545-11554
    • Liang, Z.1    Kumar, A.S.2    Jones, M.S.3    Knowles, N.J.4    Lipton, H.L.5
  • 30
    • 0028884661 scopus 로고
    • Characterization of Mengo virus neutralization epitopes. II. Infection of mice with an attenuated virus
    • 10.1006/viro.1995.9948 8525606
    • Characterization of Mengo virus neutralization epitopes. II. Infection of mice with an attenuated virus. Kobasa D, Mulvey M, Lee JS, Scraba DG, Virology 1995 214 118 127 10.1006/viro.1995.9948 8525606
    • (1995) Virology , vol.214 , pp. 118-127
    • Kobasa, D.1    Mulvey, M.2    Lee, J.S.3    Scraba, D.G.4
  • 31
    • 0026051935 scopus 로고
    • Alternative translation initiation site in the da strain of Theiler's murine encephalomyelitis virus
    • 2033677
    • Alternative translation initiation site in the DA strain of Theiler's murine encephalomyelitis virus. Kong WP, Roos RP, J Virol 1991 65 3395 3399 2033677
    • (1991) J Virol , vol.65 , pp. 3395-3399
    • Kong, W.P.1    Roos, R.P.2
  • 32
    • 84892587260 scopus 로고    scopus 로고
    • Characterization of the Sandfly fever Naples species complex and description of a new Karimabad species complex (genus Phlebovirus, family Bunyaviridae)
    • 24096318
    • Characterization of the Sandfly fever Naples species complex and description of a new Karimabad species complex (genus Phlebovirus, family Bunyaviridae). Palacios G, Tesh R, Savji N, da Rosa APT, Guzman H, Bussetti AV, Desai A, Ladner J, Sanchez-Seco M, Lipkin WI, J Gen Virol 2014 95 Pt 2 292 300 24096318
    • (2014) J Gen Virol , vol.95 , Issue.PT 2 , pp. 292-300
    • Palacios, G.1    Tesh, R.2    Savji, N.3    Da Rosa, A.P.T.4    Guzman, H.5    Bussetti, A.V.6    Desai, A.7    Ladner, J.8    Sanchez-Seco, M.9    Lipkin, W.I.10
  • 33
  • 34
    • 84876918112 scopus 로고    scopus 로고
    • The genome sequence of Lone Star virus, a highly divergent bunyavirus found in the Amblyomma americanum tick
    • 10.1371/journal.pone.0062083 23637969
    • The genome sequence of Lone Star virus, a highly divergent bunyavirus found in the Amblyomma americanum tick. Swei A, Russell BJ, Naccache SN, Kabre B, Veeraraghavan N, Pilgard MA, Johnson BJ, Chiu CY, PLoS One 2013 8 62083 10.1371/journal.pone.0062083 23637969
    • (2013) PLoS One , vol.8 , pp. 562083
    • Swei, A.1    Russell, B.J.2    Naccache, S.N.3    Kabre, B.4    Veeraraghavan, N.5    Pilgard, M.A.6    Johnson, B.J.7    Chiu, C.Y.8
  • 37
  • 39
    • 0031713179 scopus 로고    scopus 로고
    • Complete nucleotide sequence and genetic organization of Aichi virus, a distinct member of the Picornaviridae associated with acute gastroenteritis in humans
    • Complete nucleotide sequence and genetic organization of Aichi virus, a distinct member of the Picornaviridae associated with acute gastroenteritis in humans. Yamashita T, Sakae K, Tsuzuki H, Suzuki Y, Ishikawa N, Takeda N, Miyamura T, Yamazaki S, J Virol 1998 72 8408 8412 9733894 (Pubitemid 28421848)
    • (1998) Journal of Virology , vol.72 , Issue.10 , pp. 8408-8412
    • Yamashita, T.1    Sakae, K.2    Tsuzuki, H.3    Suzuki, Y.4    Ishikawa, N.5    Takeda, N.6    Miyamura, T.7    Yamazaki, S.8
  • 40
    • 0242383311 scopus 로고    scopus 로고
    • Isolation and characterization of a new species of kobuvirus associated with cattle
    • DOI 10.1099/vir.0.19266-0
    • Isolation and characterization of a new species of kobuvirus associated with cattle. Yamashita T, Ito M, Kabashima Y, Tsuzuki H, Fujiura A, Sakae K, J Gen Virol 2003 84 3069 3077 10.1099/vir.0.19266-0 14573811 (Pubitemid 37336790)
    • (2003) Journal of General Virology , vol.84 , Issue.11 , pp. 3069-3077
    • Yamashita, T.1    Ito, M.2    Kabashima, Y.3    Tsuzuki, H.4    Fujiura, A.5    Sakae, K.6
  • 41
    • 58149293409 scopus 로고    scopus 로고
    • Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae
    • 10.1007/s00705-008-0288-2 19096904
    • Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae. Reuter G, Boldizsar A, Pankovics P, Arch Virol 2009 154 101 108 10.1007/s00705-008-0288-2 19096904
    • (2009) Arch Virol , vol.154 , pp. 101-108
    • Reuter, G.1    Boldizsar, A.2    Pankovics, P.3
  • 46
    • 84880509179 scopus 로고    scopus 로고
    • Canine kobuviruses in diarrhoeic dogs in Italy
    • 10.1016/j.vetmic.2013.05.007 23806200
    • Canine kobuviruses in diarrhoeic dogs in Italy. Di Martino B, Di Felice E, Ceci C, Di Profio F, Marsilio F, Vet Microbiol 2013 166 246 249 10.1016/j.vetmic.2013.05.007 23806200
    • (2013) Vet Microbiol , vol.166 , pp. 246-249
    • Di Martino, B.1    Di Felice, E.2    Ceci, C.3    Di Profio, F.4    Marsilio, F.5
  • 49
    • 77951831305 scopus 로고    scopus 로고
    • Human picobirnaviruses identified by molecular screening of diarrhea samples
    • 10.1128/JCM.02452-09 20335418
    • Human picobirnaviruses identified by molecular screening of diarrhea samples. van Leeuwen M, Williams MM, Koraka P, Simon JH, Smits SL, Osterhaus AD, J Clin Microbiol 2010 48 1787 1794 10.1128/JCM.02452-09 20335418
    • (2010) J Clin Microbiol , vol.48 , pp. 1787-1794
    • Van Leeuwen, M.1    Williams, M.M.2    Koraka, P.3    Simon, J.H.4    Smits, S.L.5    Osterhaus, A.D.6
  • 52
    • 84862883106 scopus 로고    scopus 로고
    • Animal virus discovery: Improving animal health, understanding zoonoses, and opportunities for vaccine development
    • 10.1016/j.coviro.2012.02.012 22463981
    • Animal virus discovery: improving animal health, understanding zoonoses, and opportunities for vaccine development. Delwart E, Curr Opin Virol 2012 2 344 352 10.1016/j.coviro.2012.02.012 22463981
    • (2012) Curr Opin Virol , vol.2 , pp. 344-352
    • Delwart, E.1
  • 53
    • 80052549504 scopus 로고    scopus 로고
    • Integrative analysis of environmental sequences using MEGAN4
    • 10.1101/gr.120618.111 21690186
    • Integrative analysis of environmental sequences using MEGAN4. Huson DH, Mitra S, Ruscheweyh HJ, Weber N, Schuster SC, Genome Res 2011 21 1552 1560 10.1101/gr.120618.111 21690186
    • (2011) Genome Res , vol.21 , pp. 1552-1560
    • Huson, D.H.1    Mitra, S.2    Ruscheweyh, H.J.3    Weber, N.4    Schuster, S.C.5
  • 54
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • 10.1093/molbev/msr121 21546353
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, Mol Biol Evol 2011 28 2731 2739 10.1093/molbev/msr121 21546353
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 55
    • 65449188232 scopus 로고    scopus 로고
    • Jalview Version 2-A multiple sequence alignment editor and analysis workbench
    • 10.1093/bioinformatics/btp033 19151095
    • Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ, Bioinformatics 2009 25 1189 1191 10.1093/bioinformatics/btp033 19151095
    • (2009) Bioinformatics , vol.25 , pp. 1189-1191
    • Waterhouse, A.M.1    Procter, J.B.2    Martin, D.M.3    Clamp, M.4    Barton, G.J.5


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