Characterization of the Sandfly fever Naples species complex and description of a new Karimabad species complex (genus Phlebovirus, family Bunyaviridae)

Journal of General Virology

Volumn 95, Issue PART 2, 2014, Pages 292-300

  Palacios, Gustavo ^a   Tesh, Robert B ^b   Savji, Nazir ^c,e   Travassos da Rosa, Amelia P A ^b   Guzman, Hilda ^b   Bussetti, Ana Valeria ^c   Desai, Aaloki ^c   Ladner, Jason ^a   Sanchez Seco, Maripaz ^d   Ian Lipkin, W ^c  

^a UNITED STATES ARMY MEDICAL RESEARCH INSTITUTE OF INFECTIOUS DISEASES   (United States)

^b University of Texas Medical Branch School of Medicine   (United States)

^c Columbia University ^*  (United States)

^d INSTITUTO DE SALUD CARLOS III   (Spain)

^e NEW YORK UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

STRUCTURAL PROTEIN;

AFRICA; ANTIGENICITY; ARTICLE; BUNYAVIRUS; EGYPT; FARIMABAD VIRUS; GABEK FOREST VIRUS; GENETIC REASSORTMENT; GENOMICS; GORDIL VIRUS; GRANADA VIRUS; INDIA; ITALY; MASSILIA VIRUS; NUCLEOTIDE SEQUENCE; PHLEBOVIRUS; PRIORITY JOURNAL; SAINT FLORIS VIRUS; SEQUENCE ALIGNMENT; SERBIA; TEHRAN VIRUS; VIRUS CHARACTERIZATION; VIRUS CLASSIFICATION; VIRUS ISOLATION; VIRUS STRAIN;

HUMANS; MOLECULAR SEQUENCE DATA; PHLEBOTOMUS FEVER; PHLEBOVIRUS; PHYLOGEOGRAPHY; REASSORTANT VIRUSES; RECOMBINATION, GENETIC; RNA, VIRAL; SEQUENCE ANALYSIS, DNA;

EID: 84892587260     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.056614-0     Document Type: Article

References (57)

1. Auguste, A. J., Carrington, C. V. F., Forrester, N. L., Popov, V. L., Guzman, H., Widen, S. G., Wood, T. G., Weaver, S. C. & Tesh, R. B. Characterization of a novel Negevirus and a novel Bunyavirus isolated from Culex declaratory mosquitoes in Trinidad. J Gen Virol (in press).
2. Beaty, B., Calisher, C. H. & Shope, R. E. (1989). Arboviruses. In Diagnostic Procedures for Viral, Rickettsial and Chlamydial Infections, pp. 979-1005. Edited by N. J. Schmidt & R. W. Emmons. Washington, DC: American Public Health Association.
3. Bendtsen, J. D., Nielsen, H., von Heijne, G. & Brunak, S. (2004). Improved prediction of signal peptides: SignalP 3. 0. J Mol Biol 340, 783-795.
4. Berge, T. (1975). International Catalogue of Arboviruses Including Certain Other Viruses of Vertebrates. Atlanta: CDC.
5. Billecocq, A., Spiegel, M., Vialat, P., Kohl, A., Weber, F., Bouloy, M. & Haller, O. (2004). NSs protein of Rift Valley Fever Virus blocks interferon production by inhibiting host gene transcription. J Virol 78, 9798-9806.
6. Bishop, D. H., Calisher, C. H., Casals, J., Chumakov, M. P., Gaidamovich, S. Y., Hannoun, C., Lvov, D. K., Marshall, I. D., Oker-Blom, N. & other authors (1980). Bunyaviridae. Intervirology 14, 125-143.
7. Bouloy, M., Janzen, C., Vialat, P., Khun, H., Pavlovic, J., Huerre, M. & Haller, O. (2001). Genetic evidence for an interferon-antagonistic function of Rift Valley Fever Virus nonstructural protein NSs. J Virol 75, 1371-1377.
8. Bowen, M. D., Trappier, S. G., Sanchez, A. J., Meyer, R. F., Goldsmith, C. S., Zaki, S. R., Dunster, L. M., Peters, C. J., Ksiazek, T. G., Nichol, S. T. & RVF Task Force (2001). A reassortant bunyavirus isolated from acute hemorrhagic fever cases in Kenya and Somalia. Virology 291, 185-190.
9. Briese, T., Bird, B., Kapoor, V., Nichol, S. T. & Lipkin, W. I. (2006). Batai and Ngari viruses: M segment reassortment and association with severe febrile disease outbreaks in East Africa. J Virol 80, 5627-5630.
10. Briese, T., Kapoor, V. & Lipkin, W. I. (2007). Natural M-segment reassortment in Potosi and Main Drain viruses: implications for the evolution of orthobunyaviruses. Arch Virol 152, 2237-2247.
11. Burt, F. J., Paweska, J. T., Ashkettle, B. & Swanepoel, R. (2009). Genetic relationship in southern African Crimean-Congo haemorrhagic fever virus isolates: evidence for occurrence of reassortment. Epidemiol Infect 137, 1302-1308.
12. Charrel, R. N., Gallian, P., Navarro-Mari, J. M., Nicoletti, L., Papa, A., Sánchez-Seco, M. P., Tenorio, A. & de Lamballerie, X. (2005). Emergence of Toscana virus in Europe. Emerg Infect Dis 11, 1657-1663.
13. Charrel, R. N., Moureau, G., Temmam, S., Izri, A., Marty, P., Parola, P., da Rosa, A. T., Tesh, R. B. & de Lamballerie, X. (2009). Massilia virus, a novel Phlebovirus (Bunyaviridae) isolated from sandflies in the Mediterranean. Vector Borne Zoonotic Dis 9, 519-530.
14. Clarke, D. H. & Casals, J. (1958). Techniques for hemagglutination and hemagglutination-inhibition with arthropod-borne viruses. Am J Trop Med Hyg 7, 561-573.
15. Claros, M. G. & von Heijne, G. (1994). TopPred II: an improved software for membrane protein structure predictions. Comput Appl Biosci 10, 685-686.
16. Collao, X., Palacios, G., de Ory, F., Sanbonmatsu, S., Pérez-Ruiz, M., Navarro, J. M., Molina, R., Hutchison, S. K., Lipkin, W. I. & other authors (2010). Granada virus: a natural phlebovirus reassortant of the sandfly fever Naples serocomplex with low seroprevalence in humans. Am J Trop Med Hyg 83, 760-765.
17. Cox-Foster, D. L., Conlan, S., Holmes, E. C., Palacios, G., Evans, J. D., Moran, N. A., Quan, P. L., Briese, T., Hornig, M. & other authors (2007). A metagenomic survey of microbes in honey bee colony collapse disorder. Science 318, 283-287.
18. Felsenstein, J. (1989). PHYLIP-Phylogeny Inference Package (Version 3. 2). Cladistics 5, 164-166.
19. Gaidamovich, S., Khutoretskaya, N., Asyamov, Y. V., Tsyupa, V. I. & Melnikova, E. (1991). Sandfly fever in Central Asia and Afghanistan. In Hemorrhagic Fever with Renal Syndrome, Tick-and Mosquito-Borne Viruses, pp. 287-293. Edited by C. H. Calisher. Springer: Vienna.
20. Henderson, W. W., Monroe, M. C., St Jeor, S. C., Thayer, W. P., Rowe, J. E., Peters, C. J. & Nichol, S. T. (1995). Naturally occurring Sin Nombre virus genetic reassortants. Virology 214, 602-610.
21. Holmes, E. C. (1998). Molecular epidemiology of dengue virus-the time for big science. Trop Med Int Health 3, 855-856.
22. Ikegami, T., Won, S., Peters, C. J. & Makino, S. (2006). Rescue of infectious Rift Valley fever virus entirely from cDNA, analysis of virus lacking the NSs gene, and expression of a foreign gene. J Virol 80, 2933-2940.
23. Iroegbu, C. U. & Pringle, C. R. (1981). Genetic interactions among viruses of the Bunyamwera complex. J Virol 37, 383-394.
24. Kahsay, R. Y., Gao, G. & Liao, L. (2005). An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes. Bioinformatics 21, 1853-1858.
25. Käll, L., Krogh, A. & Sonnhammer, E. L. (2004). A combined transmembrane topology and signal peptide prediction method. J Mol Biol 338, 1027-1036.
26. Kemp, G. E., Causey, O. R., Setzer, H. W. & Moore, D. L. (1974). Isolation of viruses from wild mammals in West Africa, 1966-1970. J Wildl Dis 10, 279-293.
27. Kondiah, K., Swanepoel, R., Paweska, J. T. & Burt, F. J. (2010). A Simple-probe real-time PCR assay for genotyping reassorted and nonreassorted isolates of Crimean-Congo hemorrhagic fever virus in southern Africa. J Virol Methods 169, 34-38.
28. Krogh, A., Larsson, B., von Heijne, G. & Sonnhammer, E. L. (2001). Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305, 567-580.
29. Li, D., Schmaljohn, A. L., Anderson, K. & Schmaljohn, C. S. (1995). Complete nucleotide sequences of the M and S segments of two hantavirus isolates from California: evidence for reassortment in nature among viruses related to hantavirus pulmonary syndrome. Virology 206, 973-983.
30. Marklewitz, M., Handrick, S., Grasse, W., Kurth, A., Lukashev, A., Drosten, C., Ellerbrok, H., Leendertz, F. H., Pauli, G. & Junglen, S. (2011). Gouleako virus isolated from West African mosquitoes constitutes a proposed novel genus in the family Bunyaviridae. J Virol 85, 9227-9234.
31. Martin, D. & Rybicki, E. (2000). RDP: detection of recombination amongst aligned sequences. Bioinformatics 16, 562-563.
32. Matsuno, K., Weisend, C., Travassos da Rosa, A. P., Anzick, S. L., Dahlstrom, E., Porcella, S. F., Dorward, D. W., Yu, X. J., Tesh, R. B. & Ebihara, H. (2013). Characterization of the Bhanja serogroup viruses (Bunyaviridae): a novel species of the genus Phlebovirus and its relationship with other emerging tick-borne phleboviruses. J Virol 87, 3719-3728.
33. McMullan, L. K., Folk, S. M., Kelly, A. J., MacNeil, A., Goldsmith, C. S., Metcalfe, M. G., Batten, B. C., Albariño, C. G., Zaki, S. R. & other authors (2012). A new phlebovirus associated with severe febrile illness in Missouri. N Engl J Med 367, 834-841.
34. Muller, R., Saluzzo, J. F., Lopez, N., Dreier, T., Turell, M., Smith, J. & Bouloy, M. (1995). Characterization of clone 13, a naturally attenuated avirulent isolate of Rift Valley fever virus, which is altered in the small segment. Am J Trop Med Hyg 53, 405-411.
35. Nichol, S. T., Beaty, B. J., Elliott, R. M., Goldbach, R., Plyusin, A., Schmaljohn, C. & Tesh, R. (2005). Family Bunyaviridae. London: Elsevier Academic Press.
36. Nunes, M. R., Travassos da Rosa, A. P., Weaver, S. C., Tesh, R. B. & Vasconcelos, P. F. (2005). Molecular epidemiology of group C viruses (Bunyaviridae, Orthobunyavirus) isolated in the Americas. J Virol 79, 10561-10570.
37. Palacios, G., Druce, J., Du, L., Tran, T., Birch, C., Briese, T., Conlan, S., Quan, P. L., Hui, J. & other authors (2008). A new arenavirus in a cluster of fatal transplant-associated diseases. N Engl J Med 358, 991-998.
38. Palacios, G., da Rosa, A. T., Savji, N., Sze, W., Wick, I., Guzman, H., Hutchison, S., Tesh, R. & Lipkin, W. I. (2011a). Aguacate virus, a new antigenic complex of the genus Phlebovirus (family Bunyaviridae). J Gen Virol 92, 1445-1453.
39. Palacios, G., Tesh, R., Travassos da Rosa, A., Savji, N., Sze, W., Jain, K., Serge, R., Guzman, H., Guevara, C. & other authors (2011b). Characterization of the Candiru antigenic complex (Bunyaviridae: Phlebovirus), a highly diverse and reassorting group of viruses affecting humans in tropical America. J Virol 85, 3811-3820.
40. Palacios, G., Savji, N., Travassos da Rosa, A., Desai, A., Sanchez-Seco, M. P., Guzman, H., Lipkin, W. I. & Tesh, R. (2013a). Characterization of the Salehabad virus species complex of the genus Phlebovirus (Bunyaviridae). J Gen Virol 94, 837-842.
41. Palacios, G., Savji, N., Travassos da Rosa, A., Guzman, H., Yu, X., Desai, A., Rosen, G. E., Hutchison, S., Lipkin, W. I. & Tesh, R. (2013b). Characterization of the Uukuniemi virus group (Phlebovirus: Bunyaviridae): evidence for seven distinct species. J Virol 87, 3187-3195.
42. Posada, D. & Crandall, K. A. (2001). Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci U S A 98, 13757-13762.
43. Pringle, C. R., Lees, J. F., Clark, W. & Elliott, R. M. (1984). Genome subunit reassortment among Bunyaviruses analysed by dot hybridization using molecularly cloned complementary DNA probes. Virology 135, 244-256.
44. Rodriguez, L. L., Owens, J. H., Peters, C. J. & Nichol, S. T. (1998). Genetic reassortment among viruses causing hantavirus pulmonary syndrome. Virology 242, 99-106.
45. Saeed, M. F., Wang, H., Suderman, M., Beasley, D. W., Travassos da Rosa, A., Li, L., Shope, R. E., Tesh, R. B. & Barrett, A. D. (2001). Jatobal virus is a reassortant containing the small RNA of Oropouche virus. Virus Res 77, 25-30.
46. Sall, A. A., de A Zanotto, P. M., Zeller, H. G., Digoutte, J. P., Thiongane, Y. & Bouloy, M. (1997). Variability of the NS (S) protein among Rift Valley fever virus isolates. J Gen Virol 78, 2853-2858.
47. Salminen, M. O., Carr, J. K., Burke, D. S. & McCutchan, F. E. (1995). Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res Hum Retroviruses 11, 1423-1425.
48. Smith, J. M. (1992). Analyzing the mosaic structure of genes. J Mol Evol 34, 126-129.
49. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
50. Tesh, R. B. (1988). Phlebotomus Fevers. Boca Raton: CRC Press.
51. Tesh, R. B., Saidi, S., Gajdamovic, S. J., Rodhain, F. & Vesenjak-Hirjan, J. (1976). Serological studies on the epidemiology of sandfly fever in the Old World. Bull World Health Organ 54, 663-674.
52. Tesh, R., Saidi, S., Javadian, E. & Nadim, A. (1977). Studies on the epidemiology of sandfly fever in Iran. I. Virus isolates obtained from Phlebotomus. Am J Trop Med Hyg 26, 282-287.
53. Tesh, R. B., Peters, C. J. & Meegan, J. M. (1982). Studies on the antigenic relationship among phleboviruses. Am J Trop Med Hyg 31, 149-155.
54. Vialat, P., Billecocq, A., Kohl, A. & Bouloy, M. (2000). The S segment of Rift Valley Fever Phlebovirus (Bunyaviridae) carries determinants for attenuation and virulence in mice. J Virol 74, 1538-1543.
55. Yanase, T., Kato, T., Yamakawa, M., Takayoshi, K., Nakamura, K., Kokuba, T. & Tsuda, T. (2006). Genetic characterization of Batai virus indicates a genomic reassortment between orthobunyaviruses in nature. Arch Virol 151, 2253-2260.
56. Yanase, T., Aizawa, M., Kato, T., Yamakawa, M., Shirafuji, H. & Tsuda, T. (2010). Genetic characterization of Aino and Peaton virus field isolates reveals a genetic reassortment between these viruses in nature. Virus Res 153, 1-7.
57. Yu, X. J., Liang, M. F., Zhang, S. Y., Liu, Y., Li, J. D., Sun, Y. L., Zhang, L., Zhang, Q. F., Popov, V. L. & other authors (2011). Fever with thrombocytopenia associated with a novel bunyavirus in China. N Engl J Med 364, 1523-1532.