The fecal viral flora of California sea lions

Journal of Virology

Volumn 85, Issue 19, 2011, Pages 9909-9917

  Li, Linlin ^a,b   Shan, Tongling ^a,c   Wang, Chunlin ^d   Côté, Colette ^e   Kolman, John ^e   Onions, David ^e   Gulland, Frances M D ^f   Delwart, Eric ^a,b  

^a BLOOD SYSTEMS RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c SHANGHAI JIAO TONG UNIVERSITY   (China)

^d STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e BioReliance   (United States)

^f THE MARINE MAMMAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENO ASSOCIATED VIRUS; AFRICAN SWINE FEVER VIRUS; ANELLOVIRUS; ARTICLE; ASTROVIRUS; BACTERIOPHAGE; BOCAVIRUS; CALICIVIRUS; CALIFORNIA SEA LION; CARDIOVIRUS; CONTROLLED STUDY; DNA VIRUS; ENTEROVIRUS; FECES ANALYSIS; FECES MICROFLORA; HEPEVIRUS; MICROVIRIDAE; NONHUMAN; NOROVIRUS; NUCLEOTIDE SEQUENCE; PAPILLOMA VIRUS; PARVOVIRUS; PHYLOGENY; PICOBIRNAVIRUS; PICORNAVIRUS; PREVALENCE; PRIORITY JOURNAL; PYROSEQUENCING; REOVIRUS; RNA VIRUS; ROTAVIRUS; SAPELOVIRUS; SAPOVIRUS; SEAL; VIRUS ASSEMBLY; VIRUS GENOME; VIRUS IDENTIFICATION;

ANIMALS; BIODIVERSITY; FECES; METAGENOME; MOLECULAR SEQUENCE DATA; SEA LIONS; SEQUENCE ANALYSIS, DNA; VIRUSES;

ANIMALIA; ASTROVIRIDAE; BOCAVIRUS; CALICIVIRIDAE; DNA VIRUSES; MAMMALIA; MICROVIRIDAE; OTARIIDAE; PARVOVIRIDAE; PICORNAVIRIDAE; REOVIRIDAE; RNA VIRUSES; ZALOPHUS;

EID: 80053965904     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.05026-11     Document Type: Article

References (67)

1. Allander, T., S. U. Emerson, R. E. Engle, R. H. Purcell, and J. Bukh. 2001. A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc. Natl. Acad. Sci. U. S. A. 98:11609-11614.
2. Allander, T., et al. 2005. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc. Natl. Acad. Sci. U. S. A. 102:12891-12896.
3. Arthur, J. L., G. D. Higgins, G. P. Davidson, R. C. Givney, and R. M. Ratcliff. 2009. A novel bocavirus associated with acute gastroenteritis in Australian children. PLoS Pathog. 5:e1000391.
4. Barrett, T., P. Wohlsein, C. A. Bidewell, and S. F. Rowell. 2004. Canine distemper virus in a Californian sea lion (Zalophus californianus). Vet. Rec. 154:334-336.
5. Blasius, M. E., and G. D. Goodmanlowe. 2008. Contaminants still high in top-level carnivores in the Southern California Bight: levels of DDT and PCBs in resident and transient pinnipeds. Mar. Pollut. Bull. 56:1973-1982.
6. Blomstrom, A. L., et al. 2009. Detection of a novel porcine boca-like virus in the background of porcine circovirus type 2 induced postweaning multisystemic wasting syndrome. Virus Res. 146:125-129.
7. Bonner, W. 2004. Seals and sea lions of the world. Facts on File, New York, NY.
8. Breitbart, M., et al. 2008. Viral diversity and dynamics in an infant gut. Res. Microbiol. 159:367-373.
9. Breitbart, M., et al. 2003. Metagenomic analyses of an uncultured viral community from human feces. J. Bacteriol. 185:6220-6223.
10. Buckles, E. L., et al. 2006. Otarine herpesvirus-1, not papillomavirus, is associated with endemic tumours in California sea lions (Zalophus californianus). J. Comp. Pathol. 135:183-189.
11. Cann, A. J., S. E. Fandrich, and S. Heaphy. 2005. Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes. Virus Genes 30:151-156.
12. Cheng, W. X., et al. 2010. Identification and nearly full-length genome characterization of novel porcine bocaviruses. PLoS One 5:e13583.
13. Chevreux, B. 2005. MIRA: an automated genome and EST assembler. Ruprecht-Karls University, Heidelberg, Germany.
14. Chiba, S., et al. 1979. An outbreak of gastroenteritis associated with calicivirus in an infant home. J. Med. Virol. 4:249-254.
15. Colegrove, K. M., et al. 2010. Polyomavirus infection in a free-ranging California sea lion (Zalophus californianus) with intestinal T-cell lymphoma. J. Vet. Diagn. Invest. 22:628-632.
16. Coria-Galindo, E., et al. 2009. Rotavirus infections in Galapagos sea lions. J. Wildl. Dis. 45:722-728.
17. David, S. T., et al. 2007. An outbreak of norovirus caused by consumption of oysters from geographically dispersed harvest sites, British Columbia, Canada, 2004. Foodborne Pathog. Dis. 4:349-358.
18. Dierauf, L. A., L. J. Lowenstine, and C. Jerome. 1981. Viral hepatitis (adenovirus) in a California sea lion. J. Am. Vet. Med. Assoc. 179:1194-1197.
19. Donaldson, E. F., et al. 2010. Metagenomic analysis of the viromes of three North American bat species: viral diversity among different bat species that share a common habitat. J. Virol. 84:13004-13018.
20. Emerson, S. U., et al. 2005. Caliciviridae, p. 353-369. In C. Fauquet, M. Mayo, J. Maniloff, U. Desselberger, and L. Ball (ed.), Virus taxonomy: eighth report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, CA.
21. Flotte, T. R., and K. I. Berns. 2005. Adeno-associated virus: a ubiquitous commensal of mammals. Hum. Gene Ther. 16:401-407.
22. Grachev, M. A., et al. 1989. Distemper virus in Baikal seals. Nature 338:209-210.
23. Greig, D. J., F. M. D. Gulland, and C. Kreuder. 2005. A decade of live California sea lion (Zalophus californianus) strandings along the central California coast: causes and trends, 1991-2000. Aquat. Mammals 31:40-51.
24. Guix, S., A. Bosch, and R. M. Pinto. 2005. Human astrovirus diagnosis and typing: current and future prospects. Lett. Appl. Microbiol. 41:103-105.
25. Hernandez-Morga, J., J. Leon-Felix, F. Peraza-Garay, B. G. Gil-Salas, and C. Chaidez. 2009. Detection and characterization of hepatitis A virus and norovirus in estuarine water samples using ultrafiltration-RT-PCR integrated methods. J. Appl. Microbiol. 106:1579-1590.
26. Kahn, J. 2008. Human bocavirus: clinical significance and implications. Curr. Opin. Pediatr. 20:62-66.
27. Kapoor, A., et al. 2010. Identification and characterization of a new bocavirus species in gorillas. PLoS One 5:e11948.
28. Kapoor, A., P. Simmonds, W. I. Lipkin, S. Zaidi, and E. Delwart. Use of nucleotide composition analysis to infer hosts for three novel picorna-like viruses. J. Virol. 84:10322-10328.
29. Kapoor, A., et al. 2009. A newly identified bocavirus species in human stool. J. Infect. Dis. 199:196-200.
30. Kennedy, S., et al. 2000. Mass die-off of Caspian seals caused by canine distemper virus. Emerg. Infect. Dis. 6:637-639.
31. Kennedy-Stoskopf, S., M. K. Stoskopf, M. A. Eckhaus, and J. D. Strandberg. 1986. Isolation of a retrovirus and a herpesvirus from a captive California sea lion. J. Wildl. Dis. 22:156-164.
32. King, D. P., et al. 2002. Otarine herpesvirus-1: a novel gammaherpesvirus associated with urogenital carcinoma in California sea lions (Zalophus californianus). Vet. Microbiol. 86:131-137.
33. Kumar, S., M. Nei, J. Dudley, and K. Tamura. 2008. MEGA: a biologistcentric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 9:299-306.
34. Li, L., et al. 2010. Multiple diverse circoviruses infect farm animals and are commonly found in human and chimpanzee feces. J. Virol. 84:1674-1682.
35. Li, L., et al. 2010. Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses. J. Virol. 84:6955-6965.
36. Lipscomb, T. P., et al. 2000. Common metastatic carcinoma of California sea lions (Zalophus californianus): evidence of genital origin and association with novel gammaherpesvirus. Vet. Pathol. 37:609-617.
37. Manteufel, J., and U. Truyen. 2008. Animal bocaviruses: a brief review. Intervirology 51:328-334.
38. Martella, V., G. Elia, and C. Buonavoglia. 2008. Canine distemper virus. Vet. Clin. North Am. Small Anim. Pract. 38:787-797.
39. Martella, V., et al. 2008. Identification of a porcine calicivirus related genetically to human sapoviruses. J. Clin. Microbiol. 46:1907-1913.
40. Martin, E. T., et al. Frequent and prolonged shedding of bocavirus in young children attending daycare. J. Infect. Dis. 201:1625-1632.
41. McClenahan, S. D., et al. 2008. Genomic characterization of novel marine vesiviruses from Steller sea lions (Eumetopias jubatus) from Alaska. Virus Res. 138:26-35.
42. Monroe, S., M. Carter, J. Hermann, D. Mitchell, and A. Sanchez-Fauquier. 2005. Astroviridae, p. 859-864. In C. Fauquet, M. Mayo, J. Maniloff, U. Desselberger, and L. Ball (ed.), Virus taxonomy: eighth report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, CA.
43. Neill, J. D., R. F. Meyer, and B. S. Seal. 1995. Genetic relatedness of the caliciviruses: San Miguel sea lion and vesicular exanthema of swine viruses constitute a single genotype within the Caliciviridae. J. Virol. 69:4484-4488.
44. Newman, S. J., and S. A. Smith. 2006. Marine mammal neoplasia: a review. Vet. Pathol. 43:865-880.
45. Ng, T. F., W. K. Suedmeyer, E. Wheeler, F. Gulland, and M. Breitbart. 2009. Novel anellovirus discovered from a mortality event of captive California sea lions. J. Gen. Virol. 90:1256-1261.
46. Nollens, H. H., et al. 2006. Seroepidemiology of parapoxvirus infections in captive and free-ranging California sea lions Zalophus californianus. Dis. Aquat. Organ. 69:153-161.
47. Nollens, H. H., et al. 2006. Pathology and preliminary characterization of a parapoxvirus isolated from a California sea lion (Zalophus californianus). J. Wildl. Dis. 42:23-32.
48. Pomeroy, L. W., O. N. Bjornstad, and E. C. Holmes. 2008. The evolutionary and epidemiological dynamics of the paramyxoviridae. J. Mol. Evol. 66:98-106.
49. Ramig, R. F., M. Ciarlet, P. P. C. Mertens, and T. S. Dermody. 2005. Rotavirus, p. 859-864. In C. Fauquet, M. Mayo, J. Maniloff, U. Desselberger, and L. Ball (ed.), Virus taxonomy: eighth report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, CA.
50. Rivera, R., H. H. Nollens, S. Venn-Watson, F. M. Gulland, and J. F. Wellehan, Jr. 2010. Characterization of phylogenetically diverse astroviruses of marine mammals. J. Gen. Virol. 91:166-173.
51. Saitoh, M., H. Kimura, K. Kozawa, O. Nishio, and A. Shoji. 2007. Detection and phylogenetic analysis of norovirus in Corbicula fluminea in a freshwater river in Japan. Microbiol. Immunol. 51:815-822.
52. Sharp, C. P., et al. 2010. Widespread infection with homologues of human parvoviruses B19, PARV4, and human bocavirus of chimpanzees and gorillas in the wild. J. Virol. 84:10289-10296.
53. Smith, A. W., T. G. Akers, S. H. Madin, and N. A. Vedros. 1973. San Miguel sea lion virus isolation, preliminary characterization and relationship to vesicular exanthema of swine virus. Nature 244:108-110.
54. Smith, A. W., et al. 1998. In vitro isolation and characterization of a calicivirus causing a vesicular disease of the hands and feet. Clin. Infect. Dis. 26:434-439.
55. Smith, A. W., et al. 2006. Vesivirus viremia and seroprevalence in humans. J. Med. Virol. 78:693-701.
56. Smith, A. W., D. E. Skilling, A. H. Dardiri, and A. B. Latham. 1980. Calicivirus pathogenic for swine: a new serotype isolated from opaleye Girella nigricans, an ocean fish. Science 209:940-941.
57. Smith, A. W., N. A. Vedros, T. G. Akers, and W. G. Gilmartin. 1978. Hazards of disease transfer from marine mammals to land mammals: review and recent findings. J. Am. Vet. Med. Assoc. 173:1131-1133.
58. Stanway, G., et al. 2005. Picornaviridae, p. 859-864. In C. Fauquet, M. Mayo, J. Maniloff, U. Desselberger, and L. Ball (ed.), Virus taxonomy: eighth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, San Diego, CA.
59. Tattersall, P., et al. 2005. Parvoviridae, p. 353-369. In C. Fauquet, M. Mayo, J. Maniloff, U. Desselberger, and L. Ball (ed.), Virus taxonomy: eighth report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, CA.
60. Terio, V., et al. 2010. Norovirus in retail shellfish. Food Microbiol. 27:29-32.
61. Usuku, S., M. Kumazaki, K. Kitamura, O. Tochikubo, and Y. Noguchi. 2008. An outbreak of food-borne gastroenteritis due to sapovirus among junior high school students. Jpn. J. Infect. Dis. 61:438-441.
62. Victoria, J. G., et al. 2009. Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J. Virol. 83:4642-4651.
63. Victoria, M., et al. 2010. Assessment of norovirus contamination in environmental samples from Florianopolis City, Southern Brazil. J. Appl. Microbiol. 109:231-238.
64. Wellehan, J. J. 2010. Discovery, phylogenetic analysis, diagnostic test development, and surveillance of the astroviruses of marine mammals. Ph.D. thesis. University of Florida, Gainesville, FL.
65. Wilder, F. W., and A. H. Dardiri. 1978. San Miguel sea lion virus fed to mink and pigs. Can. J. Comp. Med. 42:200-204.
66. Zadori, Z., R. Stefancsik, T. Rauch, and J. Kisary. 1995. Analysis of the complete nucleotide sequences of goose and muscovy duck parvoviruses indicates common ancestral origin with adeno-associated virus 2. Virology 212:562-573.
67. Zhang, T., et al. 2006. RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol. 4:e3.