-
1
-
-
84870384047
-
The novel MER transposon-derived miRNAs in human genome
-
Ahn K, Gim JA, Ha HS, Han K, Kim HS. 2013. The novel MER transposon-derived miRNAs in human genome. Gene 512:422-428.
-
(2013)
Gene
, vol.512
, pp. 422-428
-
-
Ahn, K.1
Gim, J.A.2
Ha, H.S.3
Han, K.4
Kim, H.S.5
-
2
-
-
80053359585
-
The genome of the green anole lizard and a comparative analysis with birds and mammals
-
Alfoldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, et al. 2011. The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature 477:587-591.
-
(2011)
Nature
, vol.477
, pp. 587-591
-
-
Alfoldi, J.1
Di Palma, F.2
Grabherr, M.3
Williams, C.4
Kong, L.5
Mauceli, E.6
Russell, P.7
Lowe, C.B.8
Glor, R.E.9
Jaffe, J.D.10
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215:403-410.
-
(1990)
J Mol Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP. 2004. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
5
-
-
40849098032
-
Loss of LINE-1 activity in the megabats
-
Cantrell MA, Scott L, Brown CJ, Martinez AR, Wichman HA. 2008. Loss of LINE-1 activity in the megabats. Genetics 178:393-404.
-
(2008)
Genetics
, vol.178
, pp. 393-404
-
-
Cantrell, M.A.1
Scott, L.2
Brown, C.J.3
Martinez, A.R.4
Wichman, H.A.5
-
6
-
-
0036828639
-
The Argonaute family: Tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis
-
Carmell MA, Xuan Z, Zhang MQ, Hannon GJ. 2002. The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis. Genes Dev. 16: 2733-2742.
-
(2002)
Genes Dev.
, vol.16
, pp. 2733-2742
-
-
Carmell, M.A.1
Xuan, Z.2
Zhang, M.Q.3
Hannon, G.J.4
-
7
-
-
60149088848
-
Origins and mechanisms of miRNAs and siRNAs
-
Carthew RW, Sontheimer EJ. 2009. Origins and mechanisms of miRNAs and siRNAs. Cell 136:642-655.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
8
-
-
33846283385
-
The evolution of gene regulation by transcription factors and microRNAs
-
Chen K, Rajewsky N. 2007. The evolution of gene regulation by transcription factors and microRNAs. Nat Rev Genet. 8:93-103.
-
(2007)
Nat Rev Genet.
, vol.8
, pp. 93-103
-
-
Chen, K.1
Rajewsky, N.2
-
9
-
-
0036899513
-
The genetics of variation in gene expression
-
Cheung VG, Spielman RS. 2002. The genetics of variation in gene expression. Nat Genet. 32(Suppl), 522-525.
-
(2002)
Nat Genet.
, vol.32
, Issue.SUPPL.
, pp. 522-525
-
-
Cheung, V.G.1
Spielman, R.S.2
-
10
-
-
84863496231
-
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
-
Consortium HG. 2012. Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature 487:94-98.
-
(2012)
Nature
, vol.487
, pp. 94-98
-
-
Consortium, H.G.1
-
12
-
-
70350231929
-
Marsupial-specific microRNAs evolved from marsupial-specific transposable elements
-
Devor EJ, Peek AS, Lanier W, Samollow PB. 2009. Marsupial-specific microRNAs evolved from marsupial-specific transposable elements. Gene 448:187-191.
-
(2009)
Gene
, vol.448
, pp. 187-191
-
-
Devor, E.J.1
Peek, A.S.2
Lanier, W.3
Samollow, P.B.4
-
13
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
14
-
-
0036250001
-
Plant transposable elements: Where genetics meets genomics
-
Feschotte C, Jiang N, Wessler SR. 2002. Plant transposable elements: where genetics meets genomics. Nat Rev Genet. 3:329-341.
-
(2002)
Nat Rev Genet.
, vol.3
, pp. 329-341
-
-
Feschotte, C.1
Jiang, N.2
Wessler, S.R.3
-
16
-
-
84858221706
-
Ensembl 2012
-
Flicek P, Amode MR, Barrell D, Beal K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fairley S, Fitzgerald S, et al. 2012. Ensembl 2012. Nucleic Acids Res. 40:D84-D90.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Carvalho-Silva, D.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
-
17
-
-
0028012669
-
Amplification of the ancient murine Lx family of long interspersed repeated DNA occurred during the murine radiation
-
Furano AV, Hayward BE, Chevret P, Catzeflis F, Usdin K. 1994. Amplification of the ancient murine Lx family of long interspersed repeated DNA occurred during the murine radiation. J Mol Evol. 38: 18-27.
-
(1994)
J Mol Evol.
, vol.38
, pp. 18-27
-
-
Furano, A.V.1
Hayward, B.E.2
Chevret, P.3
Catzeflis, F.4
Usdin, K.5
-
18
-
-
77951778552
-
A role for host-parasite interactions in the horizontal transfer of transposons across phyla
-
Gilbert C, Schaack S, Pace JK 2nd, Brindley PJ, Feschotte C. 2010. A role for host-parasite interactions in the horizontal transfer of transposons across phyla. Nature 464:1347-1350.
-
(2010)
Nature
, vol.464
, pp. 1347-1350
-
-
Gilbert, C.1
Schaack, S.2
Pace, I.I.J.K.3
Brindley, P.J.4
Feschotte, C.5
-
21
-
-
3042767202
-
MicroRNAs: Small RNAs with a big role in gene regulation
-
He L, Hannon GJ. 2004. MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet. 5:522-531.
-
(2004)
Nat Rev Genet.
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
22
-
-
42949146575
-
MicroRNAs and the advent of vertebratemorphological complexity
-
Heimberg AM, Sempere LF, Moy VN, Donoghue PC, Peterson KJ. 2008. MicroRNAs and the advent of vertebratemorphological complexity. Proc Natl Acad Sci USA. 105:2946-2950.
-
(2008)
Proc Natl Acad Sci USA.
, vol.105
, pp. 2946-2950
-
-
Heimberg, A.M.1
Sempere, L.F.2
Moy, V.N.3
Donoghue, P.C.4
Peterson, K.J.5
-
23
-
-
84871823219
-
The diversity of class II transposable elements in mammalian genomes has arisen from ancestral phylogenetic splits during ancient waves of proliferation through the genome
-
Hellen EH, Brookfield JF. 2013. The diversity of class II transposable elements in mammalian genomes has arisen from ancestral phylogenetic splits during ancient waves of proliferation through the genome. Mol Biol Evol. 30:100-108.
-
(2013)
Mol Biol Evol.
, vol.30
, pp. 100-108
-
-
Hellen, E.H.1
Brookfield, J.F.2
-
24
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang DW, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 4:44-57.
-
(2009)
Nat Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
25
-
-
84873607017
-
Human microRNAs originated from two periods at accelerated rates in mammalian evolution
-
Iwama H, Kato K, Imachi H, Murao K, Masaki T. 2013. Human microRNAs originated from two periods at accelerated rates in mammalian evolution. Mol Biol Evol. 30:613-626.
-
(2013)
Mol Biol Evol.
, vol.30
, pp. 613-626
-
-
Iwama, H.1
Kato, K.2
Imachi, H.3
Murao, K.4
Masaki, T.5
-
26
-
-
80052854314
-
Families of transposable elements, population structure and the origin of species
-
Jurka J, Bao W, Kojima KK. 2011. Families of transposable elements, population structure and the origin of species. Biol Direct. 6:44.
-
(2011)
Biol Direct.
, vol.6
, pp. 44
-
-
Jurka, J.1
Bao, W.2
Kojima, K.K.3
-
27
-
-
84867748191
-
Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates
-
Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG. 2012. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates. Biol Direct. 7:36.
-
(2012)
Biol Direct.
, vol.7
, pp. 36
-
-
Jurka, J.1
Bao, W.2
Kojima, K.K.3
Kohany, O.4
Yurka, M.G.5
-
28
-
-
84884855941
-
Identification of microRNA-like RNAs in the filamentous fungus Trichoderma reesei by solexa sequencing
-
Kang K, Zhong J, Jiang L, Liu G, Gou CY, Wu Q, Wang Y, Luo J, Gou D. 2013. Identification of microRNA-like RNAs in the filamentous fungus Trichoderma reesei by solexa sequencing. PLoS One 8: e76288.
-
(2013)
PLoS One
, vol.8
-
-
Kang, K.1
Zhong, J.2
Jiang, L.3
Liu, G.4
Gou, C.Y.5
Wu, Q.6
Wang, Y.7
Luo, J.8
Gou, D.9
-
29
-
-
33750831582
-
Annotation, submission and screening of repetitive elements in Repbase: RebaseSubmitter and Censor
-
Kohany O, Gentles A, Hankus L, Jurka J. 2006. Annotation, submission and screening of repetitive elements in Repbase: RebaseSubmitter and Censor. BMC Bioinformatics 7:474.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 474
-
-
Kohany, O.1
Gentles, A.2
Hankus, L.3
Jurka, J.4
-
30
-
-
0001803394
-
Chiroptera: Systematics
-
In: Niethammer J, Schliemann H, Starck D, editors Berlin: de Gruyter
-
Koopman KF. 1994. Chiroptera: Systematics. In: Niethammer J, Schliemann H, Starck D, editors. Handbuch der Zoologie. Berlin: de Gruyter. p. 100-109.
-
(1994)
Handbuch der Zoologie
, pp. 100-109
-
-
Koopman, K.F.1
-
31
-
-
78651293534
-
MiRBase: Integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S. 2011. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39: D152-D157.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
32
-
-
37349042903
-
Experimental validation of miRNA targets
-
Kuhn DE, Martin MM, Feldman DS, Terry AV Jr, Nuovo GJ, Elton TS. 2008. Experimental validation of miRNA targets. Methods 44:47-54.
-
(2008)
Methods
, vol.44
, pp. 47-54
-
-
Kuhn, D.E.1
Martin, M.M.2
Feldman, D.S.3
Terry Jr., A.V.4
Nuovo, G.J.5
Elton, T.S.6
-
33
-
-
78650438634
-
Identifying the confounding factors in resolving phylogenetic relationships in Vespertilionidae
-
Lack JB, Van Den Bussche RA. 2010. Identifying the confounding factors in resolving phylogenetic relationships in Vespertilionidae. J Mammal. 91:1435-1448.
-
(2010)
J Mammal.
, vol.91
, pp. 1435-1448
-
-
Lack, J.B.1
Van Den Bussche, R.A.2
-
34
-
-
0036544755
-
Micro RNAs are complementary to 30 UTR sequence motifs that mediate negative post-transcriptional regulation
-
Lai EC. 2002. Micro RNAs are complementary to 30 UTR sequence motifs that mediate negative post-transcriptional regulation. Nat Genet. 30:363-364.
-
(2002)
Nat Genet.
, vol.30
, pp. 363-364
-
-
Lai, E.C.1
-
35
-
-
84867043271
-
Genetic diversity of neotropical Myotis (chiroptera: Vespertilionidae) with an emphasis on South American species
-
Larsen RJ, Knapp MC, Genoways HH, Khan FA, Larsen PA, Wilson DE, Baker RJ. 2012. Genetic diversity of neotropical Myotis (chiroptera: vespertilionidae) with an emphasis on South American species. PLoS One 7:e46578.
-
(2012)
PLoS One
, vol.7
-
-
Larsen, R.J.1
Knapp, M.C.2
Genoways, H.H.3
Khan, F.A.4
Larsen, P.A.5
Wilson, D.E.6
Baker, R.J.7
-
36
-
-
84883319233
-
Identification of microRNA-like RNAs in mycelial and yeast phases of the thermal dimorphic fungus Penicillium marneffei
-
Lau SK, ChowWN, Wong AY, Yeung JM, Bao J, Zhang N, Lok S, Woo PC, Yuen KY. 2013. Identification of microRNA-like RNAs in mycelial and yeast phases of the thermal dimorphic fungus Penicillium marneffei. PLoS Negl Trop Dis. 7:e2398.
-
(2013)
PLoS Negl Trop Dis.
, vol.7
-
-
Lau, S.K.1
Chow, W.N.2
Wong, A.Y.3
Yeung, J.M.4
Bao, J.5
Zhang, N.6
Lok, S.7
Woo, P.C.8
Yuen, K.Y.9
-
37
-
-
61349156757
-
Global cooling during the eocene-oligocene climate transition
-
Liu Z, Pagani M, Zinniker D, Deconto R, Huber M, Brinkhuis H, Shah SR, Leckie RM, Pearson A. 2009. Global cooling during the eocene-oligocene climate transition. Science 323:1187-1190.
-
(2009)
Science
, vol.323
, pp. 1187-1190
-
-
Liu, Z.1
Pagani, M.2
Zinniker, D.3
Deconto, R.4
Huber, M.5
Brinkhuis, H.6
Shah, S.R.7
Leckie, R.M.8
Pearson, A.9
-
38
-
-
80055070300
-
Impacts of the Cretaceous terrestrial revolution and KPg extinction on mammal diversification
-
Meredith RW, Janecka JE, Gatesy J, Ryder OA, Fisher CA, Teeling EC, Goodbla A, Eizirik E, Simao TL, Stadler T, et al. 2011. Impacts of the Cretaceous terrestrial revolution and KPg extinction on mammal diversification. Science 334:521-524.
-
(2011)
Science
, vol.334
, pp. 521-524
-
-
Meredith, R.W.1
Janecka, J.E.2
Gatesy, J.3
Ryder, O.A.4
Fisher, C.A.5
Teeling, E.C.6
Goodbla, A.7
Eizirik, E.8
Simao, T.L.9
Stadler, T.10
-
39
-
-
34547659887
-
A family matter: Conclusive resolution of the taxonomic position of the long-fingered bats, Miniopterus
-
Miller-Butterworth CM, Murphy WJ, O'Brien SJ, Jacobs DS, Springer MS, Teeling EC. 2007. A family matter: conclusive resolution of the taxonomic position of the long-fingered bats, Miniopterus. Mol Biol Evol. 24:1553-1561.
-
(2007)
Mol Biol Evol.
, vol.24
, pp. 1553-1561
-
-
Miller-Butterworth, C.M.1
Murphy, W.J.2
O'Brien, S.J.3
Jacobs, D.S.4
Springer, M.S.5
Teeling, E.C.6
-
40
-
-
84871945205
-
Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon
-
Mitra R, Li X, Kapusta A, Mayhew D, Mitra RD, Feschotte C, Craig NL. 2013. Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon. Proc Natl Acad Sci USA. 110:234-239.
-
(2013)
Proc Natl Acad Sci USA.
, vol.110
, pp. 234-239
-
-
Mitra, R.1
Li, X.2
Kapusta, A.3
Mayhew, D.4
Mitra, R.D.5
Feschotte, C.6
Craig, N.L.7
-
41
-
-
34147184456
-
Using genomic data to unravel the root of the placental mammal phylogeny
-
Murphy WJ, Pringle TH, Crider TA, Springer MS, Miller W. 2007. Using genomic data to unravel the root of the placental mammal phylogeny. Genome Res. 17:413-421.
-
(2007)
Genome Res.
, vol.17
, pp. 413-421
-
-
Murphy, W.J.1
Pringle, T.H.2
Crider, T.A.3
Springer, M.S.4
Miller, W.5
-
42
-
-
70350411861
-
Independent and parallel lateral transfer of DNA transposons in tetrapod genomes
-
Novick P, Smith J, Ray D, Boissinot S. 2010. Independent and parallel lateral transfer of DNA transposons in tetrapod genomes. Gene 449: 85-94.
-
(2010)
Gene
, vol.449
, pp. 85-94
-
-
Novick, P.1
Smith, J.2
Ray, D.3
Boissinot, S.4
-
43
-
-
67749095911
-
The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis shows more similarity to fish than mammals
-
Novick PA, Basta H, Floumanhaft M, McClure MA, Boissinot S. 2009. The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis shows more similarity to fish than mammals. Mol Biol Evol. 26:1811-1822.
-
(2009)
Mol Biol Evol.
, vol.26
, pp. 1811-1822
-
-
Novick, P.A.1
Basta, H.2
Floumanhaft, M.3
McClure, M.A.4
Boissinot, S.5
-
44
-
-
79952274187
-
The evolution and diversity of DNA transposons in the genome of the lizard Anolis carolinensis
-
Novick PA, Smith JD, Floumanhaft M, Ray DA, Boissinot S. 2011. The evolution and diversity of DNA transposons in the genome of the lizard Anolis carolinensis. Genome Biol Evol. 3:1-14.
-
(2011)
Genome Biol Evol.
, vol.3
, pp. 1-14
-
-
Novick, P.A.1
Smith, J.D.2
Floumanhaft, M.3
Ray, D.A.4
Boissinot, S.5
-
45
-
-
0004327233
-
-
Baltimore (MD): The Johns Hopkins University Press
-
Nowak RM. 1999. Walker's mammals of the world. Baltimore (MD): The Johns Hopkins University Press.
-
(1999)
Walker's Mammals of the World
-
-
Nowak, R.M.1
-
46
-
-
84870894398
-
Horizontal transfers of Mariner transposons betweenmammals and insects
-
Oliveira SG, Bao WD, Martins C, Jurka J. 2012. Horizontal transfers of Mariner transposons betweenmammals and insects. Mob DNA. 3:14.
-
(2012)
Mob DNA.
, vol.3
, pp. 14
-
-
Oliveira, S.G.1
Bao, W.D.2
Martins, C.3
Jurka, J.4
-
47
-
-
80053266481
-
Mobile DNA and the TE-thrust hypo thesis: Supporting evidence from the primates
-
Oliver KR, GreeneWK. 2011. Mobile DNA and the TE-thrust hypothesis: supporting evidence from the primates. Mob DNA. 2:8.
-
(2011)
Mob DNA.
, vol.2
, pp. 8
-
-
Oliver, K.R.1
Greene, W.K.2
-
48
-
-
84890522036
-
Transposable elements and viruses as factors in adaptation and evolution: An expansion and strengthening of the TE-Thrust hypothesis
-
Oliver KR, Greene WK. 2012. Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis. Ecol Evol. 2:2912-2933.
-
(2012)
Ecol Evol.
, vol.2
, pp. 2912-2933
-
-
Oliver, K.R.1
Greene, W.K.2
-
49
-
-
34147105638
-
The evolutionary history of human DNA transposons: Evidence for intense activity in the primate lineage
-
Pace JK 2nd, Feschotte C. 2007. The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage. Genome Res. 17:422-432.
-
(2007)
Genome Res.
, vol.17
, pp. 422-432
-
-
Pace, I.I.J.K.1
Feschotte, C.2
-
50
-
-
55949134735
-
Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods
-
Pace JK 2nd, Gilbert C, Clark MS, Feschotte C. 2008. Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods. Proc Natl Acad Sci USA. 105:17023-17028.
-
(2008)
Proc Natl Acad Sci USA.
, vol.105
, pp. 17023-17028
-
-
Pace, I.I.J.K.1
Gilbert, C.2
Clark, M.S.3
Feschotte, C.4
-
51
-
-
84864081575
-
Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats
-
Pagan HJ, Macas J, Novak P, McCulloch ES, Stevens RD, Ray DA. 2012. Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats. Genome Biol Evol. 4:575-585.
-
(2012)
Genome Biol Evol.
, vol.4
, pp. 575-585
-
-
Pagan, H.J.1
MacAs, J.2
Novak, P.3
McCulloch, E.S.4
Stevens, R.D.5
Ray, D.A.6
-
52
-
-
77958455491
-
PiggyBac-ing on a primate genome: Novel elements, recent activity and horizontal transfer
-
Pagan HJ, Smith JD, Hubley RM, Ray DA. 2010. PiggyBac-ing on a primate genome: novel elements, recent activity and horizontal transfer. Genome Biol Evol. 2:293-303.
-
(2010)
Genome Biol Evol.
, vol.2
, pp. 293-303
-
-
Pagan, H.J.1
Smith, J.D.2
Hubley, R.M.3
Ray, D.A.4
-
53
-
-
34250776711
-
A family of human microRNA genes from miniature inverted-repeat transposable elements
-
Piriyapongsa J, Jordan IK. 2007. A family of human microRNA genes from miniature inverted-repeat transposable elements. PLoS One 2: e203.
-
(2007)
PLoS One
, vol.2
-
-
Piriyapongsa, J.1
Jordan, I.K.2
-
54
-
-
34250729886
-
Origin and evolution of human microRNAs from transposable elements
-
Piriyapongsa J, Marino-Ramirez L, Jordan IK. 2007. Origin and evolution of human microRNAs from transposable elements. Genetics 176: 1323-1337.
-
(2007)
Genetics
, vol.176
, pp. 1323-1337
-
-
Piriyapongsa, J.1
Marino-Ramirez, L.2
Jordan, I.K.3
-
55
-
-
43149113564
-
Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus
-
Pritham EJ, Feschotte C. 2007. Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus. Proc Natl Acad Sci USA. 17:422-432.
-
(2007)
Proc Natl Acad Sci USA.
, vol.17
, pp. 422-432
-
-
Pritham, E.J.1
Feschotte, C.2
-
56
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26:841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
57
-
-
43149103661
-
Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus
-
Ray DA, Feschotte C, Pagan HJ, Smith JD, Pritham EJ, Arensburger P, Atkinson PW, Craig NL. 2008. Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus. Genome Res. 18: 717-728.
-
(2008)
Genome Res.
, vol.18
, pp. 717-728
-
-
Ray, D.A.1
Feschotte, C.2
Pagan, H.J.3
Smith, J.D.4
Pritham, E.J.5
Arensburger, P.6
Atkinson, P.W.7
Craig, N.L.8
-
58
-
-
33847633354
-
Bats with hATs: Evidence for recent DNA transposon activity in genus Myotis
-
Ray DA, Pagan HJT, Thompson ML, Stevens RD. 2007. Bats with hATs: evidence for recent DNA transposon activity in genus Myotis. Mol Biol Evol. 24:632-639.
-
(2007)
Mol Biol Evol.
, vol.24
, pp. 632-639
-
-
Ray, D.A.1
Pagan, H.J.T.2
Thompson, M.L.3
Stevens, R.D.4
-
59
-
-
77958486965
-
Tribal phylogenetic relationships within Vespertilioninae (Chiroptera:Vespertilionidae) based on mitochondrial and nuclear sequence data
-
Roehrs ZP, Lack JB, Van Den Bussche RA. 2010. Tribal phylogenetic relationships within Vespertilioninae (Chiroptera:Vespertilionidae) based on mitochondrial and nuclear sequence data. J Mammal 91:1073-1082.
-
(2010)
J Mammal
, vol.91
, pp. 1073-1082
-
-
Roehrs, Z.P.1
Lack, J.B.2
Van Den Bussche, R.A.3
-
60
-
-
0345306117
-
Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi
-
Sijen T, Plasterk RH. 2003. Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi. Nature 426:310-314.
-
(2003)
Nature
, vol.426
, pp. 310-314
-
-
Sijen, T.1
Plasterk, R.H.2
-
61
-
-
33845965438
-
Order chiroptera
-
In: Wilson DE, Reeder DM, editors Baltimore (MD): The Johns Hopkins University Press
-
Simmons NB. 2005. Order Chiroptera. In: Wilson DE, Reeder DM, editors. Mammal species of the world: a taxonomic and geographic reference. Baltimore (MD): The Johns Hopkins University Press. p. 312-529.
-
(2005)
Mammal Species of the World: A Taxonomic and Geographic Reference
, pp. 312-529
-
-
Simmons, N.B.1
-
63
-
-
79961177098
-
-
[Internet] [cited 2014, April 2]. Available from
-
RepeatModeler Open-1.0. 2008-2010 [Internet]. 2008-2010. [cited 2014, April 2]. Available from: http://www.repeatmasker.org.
-
(2008)
Repeat Modeler Open-1.0. 2008-2010
-
-
-
64
-
-
80155157561
-
Expedited batch processing and analysis of transposon insertions
-
Smith JD, Ray DA. 2011. Expedited batch processing and analysis of transposon insertions. BMC Res Notes. 4:482.
-
(2011)
BMC Res Notes.
, vol.4
, pp. 482
-
-
Smith, J.D.1
Ray, D.A.2
-
65
-
-
33947591101
-
Molecular phylogeny of New World Myotis (Chiroptera, Vespertilionidae) inferred from mitochondrial and nuclear DNA genes
-
Stadelmann B, Lin LK, Kunz TH, Ruedi M. 2007. Molecular phylogeny of New World Myotis (Chiroptera, Vespertilionidae) inferred from mitochondrial and nuclear DNA genes. Mol Phylogenet Evol. 43: 32-48.
-
(2007)
Mol Phylogenet Evol.
, vol.43
, pp. 32-48
-
-
Stadelmann, B.1
Lin, L.K.2
Kunz, T.H.3
Ruedi, M.4
-
66
-
-
2942527473
-
Gene prediction with a hidden Markov model and a new intron submodel
-
Stanke M, Waack S. 2003. Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics 19(2 Suppl), ii215-ii225.
-
(2003)
Bioinformatics
, vol.19
, Issue.2 SUPPL.
-
-
Stanke, M.1
Waack, S.2
-
67
-
-
79952006291
-
The limited distribution of Helitrons to vesper bats supports horizontal transfer
-
Thomas J, Sorourian M, Ray D, Baker RJ, Pritham EJ. 2011. The limited distribution of Helitrons to vesper bats supports horizontal transfer. Gene 474:52-58.
-
(2011)
Gene
, vol.474
, pp. 52-58
-
-
Thomas, J.1
Sorourian, M.2
Ray, D.3
Baker, R.J.4
Pritham, E.J.5
-
68
-
-
84870026990
-
Functional validation of microRNA-target RNA interactions
-
Vasudevan S. 2012. Functional validation of microRNA-target RNA interactions. Methods 58:126-134.
-
(2012)
Methods
, vol.58
, pp. 126-134
-
-
Vasudevan, S.1
-
69
-
-
33846895690
-
Large temperature drop across the Eocene-Oligocene transition in central North America
-
Zanazzi A, Kohn MJ, MacFadden BJ, Terry DO. 2007. Large temperature drop across the Eocene-Oligocene transition in central North America. Nature 445:639-642.
-
(2007)
Nature
, vol.445
, pp. 639-642
-
-
Zanazzi, A.1
Kohn, M.J.2
MacFadden, B.J.3
Terry, D.O.4
-
70
-
-
70349323106
-
Transposable elements and an epigenetic basis for punctuated equilibria
-
Zeh DW, Zeh JA, Ishida Y. 2009. Transposable elements and an epigenetic basis for punctuated equilibria. Bioessays 31:715-726.
-
(2009)
Bioessays
, vol.31
, pp. 715-726
-
-
Zeh, D.W.1
Zeh, J.A.2
Ishida, Y.3
|