-
1
-
-
54149095553
-
Biological principles of microRNA-mediated regulation: shared themes amid diversity
-
10.1038/nrg2455, 2729318, 18852696
-
Flynt AS, Lai EC. Biological principles of microRNA-mediated regulation: shared themes amid diversity. Nat Rev Genet 2008, 9(11):831-42. 10.1038/nrg2455, 2729318, 18852696.
-
(2008)
Nat Rev Genet
, vol.9
, Issue.11
, pp. 831-842
-
-
Flynt, A.S.1
Lai, E.C.2
-
2
-
-
58849112575
-
Biogenesis of small RNAs in animals
-
10.1038/nrm2632, 19165215
-
Kim V, Han J, Siomi M. Biogenesis of small RNAs in animals. Nat Rev Mol Cell Biol 2009, 10(2):126-139. 10.1038/nrm2632, 19165215.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, Issue.2
, pp. 126-139
-
-
Kim, V.1
Han, J.2
Siomi, M.3
-
3
-
-
0037321349
-
New microRNAs from mouse and human
-
10.1261/rna.2146903, 1370382, 12554859
-
Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T. New microRNAs from mouse and human. RNA 2003, 9(2):175-9. 10.1261/rna.2146903, 1370382, 12554859.
-
(2003)
RNA
, vol.9
, Issue.2
, pp. 175-179
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Meyer, J.3
Borkhardt, A.4
Tuschl, T.5
-
4
-
-
34250877841
-
A mammalian microRNA expression atlas based on small RNA library sequencing
-
10.1016/j.cell.2007.04.040, 2681231, 17604727
-
Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foffa R, Schliwka J, Fuchs U, Novosel A, Müller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, Vita GD, Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Lauro RD, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T. A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 2007, 129(7):1401-14. 10.1016/j.cell.2007.04.040, 2681231, 17604727.
-
(2007)
Cell
, vol.129
, Issue.7
, pp. 1401-1414
-
-
Landgraf, P.1
Rusu, M.2
Sheridan, R.3
Sewer, A.4
Iovino, N.5
Aravin, A.6
Pfeffer, S.7
Rice, A.8
Kamphorst, A.O.9
Landthaler, M.10
Lin, C.11
Socci, N.D.12
Hermida, L.13
Fulci, V.14
Chiaretti, S.15
Foffa, R.16
Schliwka, J.17
Fuchs, U.18
Novosel, A.19
Müller, R.U.20
Schermer, B.21
Bissels, U.22
Inman, J.23
Phan, Q.24
Chien, M.25
Weir, D.B.26
Choksi, R.27
Vita, G.D.28
Frezzetti, D.29
Trompeter, H.I.30
Hornung, V.31
Teng, G.32
Hartmann, G.33
Palkovits, M.34
Lauro, R.D.35
Wernet, P.36
Macino, G.37
Rogler, C.E.38
Nagle, J.W.39
Ju, J.40
Papavasiliou, F.N.41
Benzing, T.42
Lichter, P.43
Tam, W.44
Brownstein, M.J.45
Bosio, A.46
Borkhardt, A.47
Russo, J.J.48
Sander, C.49
Zavolan, M.50
Tuschl, T.51
more..
-
5
-
-
58849112575
-
Biogenesis of small RNAs in animals
-
10.1038/nrm2632, 19165215
-
Kim VN, Han J, Siomi MC. Biogenesis of small RNAs in animals. Nat Rev Mol Cell Biol 2009, 10(2):126-39. 10.1038/nrm2632, 19165215.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, Issue.2
, pp. 126-139
-
-
Kim, V.N.1
Han, J.2
Siomi, M.C.3
-
6
-
-
33645124258
-
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
-
10.1126/science.1122689, 16484454
-
Giraldez AJ, Mishima Y, Rihel J, Grocock RJ, Dongen SV, Inoue K, Enright AJ, Schier AF. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 2006, 312(5770):75-9. 10.1126/science.1122689, 16484454.
-
(2006)
Science
, vol.312
, Issue.5770
, pp. 75-79
-
-
Giraldez, A.J.1
Mishima, Y.2
Rihel, J.3
Grocock, R.J.4
Dongen, S.V.5
Inoue, K.6
Enright, A.J.7
Schier, A.F.8
-
7
-
-
28044471565
-
MicroRNA functions in animal development and human disease
-
10.1242/dev.02073, 16224045
-
Alvarez-Garcia I, Miska EA. MicroRNA functions in animal development and human disease. Development 2005, 132(21):4653-62. 10.1242/dev.02073, 16224045.
-
(2005)
Development
, vol.132
, Issue.21
, pp. 4653-4662
-
-
Alvarez-Garcia, I.1
Miska, E.A.2
-
8
-
-
29144527030
-
Plant microRNA: a small regulatory molecule with big impact
-
10.1016/j.ydbio.2005.10.036, 16325172
-
Zhang B, Pan X, Cobb GP, Anderson TA. Plant microRNA: a small regulatory molecule with big impact. Dev Biol 2006, 289:3-16. 10.1016/j.ydbio.2005.10.036, 16325172.
-
(2006)
Dev Biol
, vol.289
, pp. 3-16
-
-
Zhang, B.1
Pan, X.2
Cobb, G.P.3
Anderson, T.A.4
-
9
-
-
38549150275
-
MiRBase: tools for microRNA genomics
-
Database, 2238936, 17991681
-
Griffths-Jones S, Saini HK, Dongen SV, Enright AJ. miRBase: tools for microRNA genomics. Nucleic Acids Research 2008, (36 Database):D154-8. 2238936, 17991681.
-
(2008)
Nucleic Acids Research
, Issue.36
-
-
Griffths-Jones, S.1
Saini, H.K.2
Dongen, S.V.3
Enright, A.J.4
-
10
-
-
0034597777
-
Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA
-
10.1038/35040556, 11081512
-
Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, Maller B, Hayward DC, Ball EE, Degnan B, Müller P, Spring J, Srinivasan A, Fishman M, Finnerty J, Corbo J, Levine M, Leahy P, Davidson E, Ruvkun G. Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature 2000, 408(6808):86-9. 10.1038/35040556, 11081512.
-
(2000)
Nature
, vol.408
, Issue.6808
, pp. 86-89
-
-
Pasquinelli, A.E.1
Reinhart, B.J.2
Slack, F.3
Martindale, M.Q.4
Kuroda, M.I.5
Maller, B.6
Hayward, D.C.7
Ball, E.E.8
Degnan, B.9
Müller, P.10
Spring, J.11
Srinivasan, A.12
Fishman, M.13
Finnerty, J.14
Corbo, J.15
Levine, M.16
Leahy, P.17
Davidson, E.18
Ruvkun, G.19
-
11
-
-
58149181381
-
MiROrtho: computational survey of microRNA genes
-
Database, 10.1093/nar/gkn707, 2686488, 18927110
-
Gerlach D, Kriventseva EV, Rahman N, Vejnar CE, Zdobnov EM. miROrtho: computational survey of microRNA genes. Nucleic Acids Research 2009, (37 Database):D111-7. 10.1093/nar/gkn707, 2686488, 18927110.
-
(2009)
Nucleic Acids Research
, Issue.37
-
-
Gerlach, D.1
Kriventseva, E.V.2
Rahman, N.3
Vejnar, C.E.4
Zdobnov, E.M.5
-
12
-
-
39849111033
-
MiRNAminer: a tool for homologous microRNA gene search
-
10.1186/1471-2105-9-39, 2258288, 18215311
-
Artzi S, Kiezun A, Shomron N. miRNAminer: a tool for homologous microRNA gene search. BMC Bioinformatics 2008, 9:39. 10.1186/1471-2105-9-39, 2258288, 18215311.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 39
-
-
Artzi, S.1
Kiezun, A.2
Shomron, N.3
-
13
-
-
54049117227
-
CoGemiR: A comparative genomics microRNA database
-
10.1186/1471-2164-9-457, 2567348, 18837977
-
Maselli V, Bernardo DD, Banfi S. CoGemiR: A comparative genomics microRNA database. BMC Genomics 2008, 9:457. 10.1186/1471-2164-9-457, 2567348, 18837977.
-
(2008)
BMC Genomics
, vol.9
, pp. 457
-
-
Maselli, V.1
Bernardo, D.D.2
Banfi, S.3
-
14
-
-
84888278451
-
Current tools for the identification of miRNA genes and their targets
-
Mendes N, Freitas A, Sagot MF. Current tools for the identification of miRNA genes and their targets. Nucl Acids Res 2009, gkp145-gkp145.
-
(2009)
Nucl Acids Res
-
-
Mendes, N.1
Freitas, A.2
Sagot, M.F.3
-
15
-
-
58149185123
-
Ensembl 2009
-
Database
-
Hubbard TJP, Aken BL, Ayling S, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Clarke L, Coates G, Fairley S, Fitzgerald S, Fernandez-Banet J, Gordon L, Graf S, Haider S, Hammond M, Holland R, Howe K, Jenkinson A, Johnson N, Kahari A, Keefe D, Keenan S, Kinsella R, Kokocinski F, Kulesha E, Lawson D, Longden I, Megy K, Meidl P, Overduin B, Parker A, Pritchard B, Rios D, Schuster M, Slater G, Smedley D, Spooner W, Spudich G, Trevanion S, Vilella A, Vogel J, White S, Wilder S, Zadissa A, Birney E, Cunningham F, Curwen V, Durbin R, Fernandez-Suarez XM, Herrero J, Kasprzyk A, Proctor G, Smith J, Searle S, Flicek P. Ensembl 2009. Nucleic Acids Research 2009, (37 Database):D690-7.
-
(2009)
Nucleic Acids Research
, Issue.37
-
-
Hubbard, T.J.P.1
Aken, B.L.2
Ayling, S.3
Ballester, B.4
Beal, K.5
Bragin, E.6
Brent, S.7
Chen, Y.8
Clapham, P.9
Clarke, L.10
Coates, G.11
Fairley, S.12
Fitzgerald, S.13
Fernandez-Banet, J.14
Gordon, L.15
Graf, S.16
Haider, S.17
Hammond, M.18
Holland, R.19
Howe, K.20
Jenkinson, A.21
Johnson, N.22
Kahari, A.23
Keefe, D.24
Keenan, S.25
Kinsella, R.26
Kokocinski, F.27
Kulesha, E.28
Lawson, D.29
Longden, I.30
Megy, K.31
Meidl, P.32
Overduin, B.33
Parker, A.34
Pritchard, B.35
Rios, D.36
Schuster, M.37
Slater, G.38
Smedley, D.39
Spooner, W.40
Spudich, G.41
Trevanion, S.42
Vilella, A.43
Vogel, J.44
White, S.45
Wilder, S.46
Zadissa, A.47
Birney, E.48
Cunningham, F.49
Curwen, V.50
Durbin, R.51
Fernandez-Suarez, X.M.52
Herrero, J.53
Kasprzyk, A.54
Proctor, G.55
Smith, J.56
Searle, S.57
Flicek, P.58
more..
-
16
-
-
84871197257
-
Repeat Masker
-
Smit A, Hubley R, Green P. Repeat Masker. 2004, , http://www.ebi.ac.uk/enright-srv/MapMi/
-
(2004)
-
-
Smit, A.1
Hubley, R.2
Green, P.3
-
17
-
-
34250729886
-
Origin and Evolution of Human microRNAs From Transposable Elements
-
10.1534/genetics.107.072553, 1894593, 17435244
-
Piriyapongsa J, Marino-Ramirez L, Jordan I. Origin and Evolution of Human microRNAs From Transposable Elements. Genetics 2007, 176(2):1323. 10.1534/genetics.107.072553, 1894593, 17435244.
-
(2007)
Genetics
, vol.176
, Issue.2
, pp. 1323
-
-
Piriyapongsa, J.1
Marino-Ramirez, L.2
Jordan, I.3
-
18
-
-
62349130698
-
Ultra-fast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg S. Ultra-fast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 2009, 10(3):R25-R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biology
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.4
-
20
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
10.1080/10635150390235520, 14530136
-
Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52(5):696-704. 10.1080/10635150390235520, 14530136.
-
(2003)
Syst Biol
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
21
-
-
47049086792
-
PhyloWidget: web-based visualizations for the tree of life
-
10.1093/bioinformatics/btn235, 18487241
-
Jordan GE, Piel WH. PhyloWidget: web-based visualizations for the tree of life. Bioinformatics 2008, 24(14):1641-2. 10.1093/bioinformatics/btn235, 18487241.
-
(2008)
Bioinformatics
, vol.24
, Issue.14
, pp. 1641-1642
-
-
Jordan, G.E.1
Piel, W.H.2
-
22
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340, 390337, 15034147
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 2004, 32(5):1792-7. 10.1093/nar/gkh340, 390337, 15034147.
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
23
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
-
10.1093/bioinformatics/btp033, 2672624, 19151095
-
Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ. Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 2009, 25(9):1189-91. 10.1093/bioinformatics/btp033, 2672624, 19151095.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
24
-
-
48449084852
-
RNALogo: a new approach to display structural RNA alignment
-
Web Server, 10.1093/nar/gkn258, 2447718, 18495753
-
Chang TH, Horng JT, Huang HD. RNALogo: a new approach to display structural RNA alignment. Nucleic Acids Research 2008, (36 Web Server):W91-6. 10.1093/nar/gkn258, 2447718, 18495753.
-
(2008)
Nucleic Acids Research
, Issue.36
-
-
Chang, T.H.1
Horng, J.T.2
Huang, H.D.3
-
25
-
-
43449085794
-
UShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
-
10.1186/1471-2105-9-192, 2375906, 18405375
-
Jiang M, Anderson J, Gillespie J, Mayne M. uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts. BMC Bioinformatics 2008, 9:192. 10.1186/1471-2105-9-192, 2375906, 18405375.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 192
-
-
Jiang, M.1
Anderson, J.2
Gillespie, J.3
Mayne, M.4
-
26
-
-
64549116289
-
MicroPred: effective classification of pre-miRNAs for human miRNA gene prediction
-
10.1093/bioinformatics/btp107, 19233894
-
Batuwita R, Palade V. microPred: effective classification of pre-miRNAs for human miRNA gene prediction. Bioinformatics 2009, 25(8):989-995. 10.1093/bioinformatics/btp107, 19233894.
-
(2009)
Bioinformatics
, vol.25
, Issue.8
, pp. 989-995
-
-
Batuwita, R.1
Palade, V.2
|