-
1
-
-
19544379881
-
Stochasticity in gene expression: From theories to phenotypes
-
doi:10.1038/nrg1615
-
Kaern M, Elston TC, Blake WJ, Collins JJ. 2005 Stochasticity in gene expression: from theories to phenotypes. Nat. Rev. Genet. 6, 451-464. (doi:10.1038/nrg1615)
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 451-464
-
-
Kaern, M.1
Elston, T.C.2
Blake, W.J.3
Collins, J.J.4
-
2
-
-
41749107942
-
Stochasticity and cell fate
-
doi:10.1126/science.1147888
-
Losick R, Desplan C. 2008 Stochasticity and cell fate. Science 320, 65-68. (doi:10.1126/science.1147888)
-
(2008)
Science
, vol.320
, pp. 65-68
-
-
Losick, R.1
Desplan, C.2
-
3
-
-
0037119587
-
Stochastic gene expression in a single cell
-
doi:10.1126/science.1070919
-
Elowitz MB, Levine AJ, Siggia ED, Swain PS. 2002 Stochastic gene expression in a single cell. Science 297, 1183-1186. (doi:10.1126/science. 1070919)
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
4
-
-
77956520011
-
Functional roles for noise in genetic circuits
-
doi:10.1038/nature09326
-
Eldar A, Elowitz MB. 2010 Functional roles for noise in genetic circuits. Nature 467, 167-173. (doi:10.1038/nature09326)
-
(2010)
Nature
, vol.467
, pp. 167-173
-
-
Eldar, A.1
Elowitz, M.B.2
-
5
-
-
53549123008
-
Nature, nurture, or chance: Stochastic gene expression and its consequences
-
doi:10.1016/j.cell.2008.09.050
-
Raj A, van Oudenaarden A. 2008 Nature, nurture, or chance: stochastic gene expression and its consequences. Cell 135, 216-226. (doi:10.1016/j.cell. 2008.09.050)
-
(2008)
Cell
, vol.135
, pp. 216-226
-
-
Raj, A.1
Van Oudenaarden, A.2
-
6
-
-
84864661479
-
Stochastic expression dynamics of a transcription factor revealed by single-molecule noise analysis
-
doi:10.1038/nsmb.2336
-
Hensel Z, Feng H, Han B, Hatem C, Wang J, Xiao J. 2012 Stochastic expression dynamics of a transcription factor revealed by single-molecule noise analysis. Nat. Struct. Mol. Biol. 19, 797-802. (doi:10.1038/nsmb.2336)
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 797-802
-
-
Hensel, Z.1
Feng, H.2
Han, B.3
Hatem, C.4
Wang, J.5
Xiao, J.6
-
7
-
-
58549110229
-
Determination of cell fate selection during phage lambda infection
-
doi:10.1073/pnas.0808831105
-
St-Pierre F, Endy D. 2008 Determination of cell fate selection during phage lambda infection. Proc. Natl Acad. Sci. USA 105, 20 705-20 710. (doi:10.1073/pnas.0808831105)
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 20705-20710
-
-
St-Pierre, F.1
Endy, D.2
-
8
-
-
77952536835
-
Decision making at a subcellular level determines the outcome of bacteriophage infection
-
doi:10.1016/j.cell.2010.03.034
-
Zeng L, Skinner SO, Zong C, Sippy J, Feiss M, Golding I. 2010 Decision making at a subcellular level determines the outcome of bacteriophage infection. Cell 141, 682-691. (doi:10.1016/j.cell.2010.03.034)
-
(2010)
Cell
, vol.141
, pp. 682-691
-
-
Zeng, L.1
Skinner, S.O.2
Zong, C.3
Sippy, J.4
Feiss, M.5
Golding, I.6
-
9
-
-
84861124169
-
Microbial scout hypothesis, stochastic exit from dormancy, and the nature of slow growers
-
doi:10.1128/AEM.07307-11
-
Buerger S, Spoering A, Gavrish E, Leslin C, Ling L, Epstein SS. 2012 Microbial scout hypothesis, stochastic exit from dormancy, and the nature of slow growers. Appl. Environ. Microbiol. 78, 3221-3228. (doi:10.1128/AEM.07307- 11)
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 3221-3228
-
-
Buerger, S.1
Spoering, A.2
Gavrish, E.3
Leslin, C.4
Ling, L.5
Epstein, S.S.6
-
10
-
-
33646540711
-
Predicting stochastic gene expression dynamics in single cells
-
doi:10.1073/pnas.0509874103
-
Mettetal JT, Muzzey D, Pedraza JM, Ozbudak EM, van Oudenaarden A. 2006 Predicting stochastic gene expression dynamics in single cells. Proc. Natl Acad. Sci. USA 103, 7304-7309. (doi:10.1073/pnas.0509874103)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 7304-7309
-
-
Mettetal, J.T.1
Muzzey, D.2
Pedraza, J.M.3
Ozbudak, E.M.4
Van Oudenaarden, A.5
-
11
-
-
77955452979
-
Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence
-
doi:10.1073/pnas.1004333107
-
Rotem E, Loinger A, Ronin I, Levin-Reisman I, Gabay C, Shoresh N, Biham O, Balaban NQ. 2010 Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence. Proc. Natl Acad. Sci. USA 107, 2541-2546. (doi:10.1073/pnas.1004333107)
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 2541-2546
-
-
Rotem, E.1
Loinger, A.2
Ronin, I.3
Levin-Reisman, I.4
Gabay, C.5
Shoresh, N.6
Biham, O.7
Balaban, N.Q.8
-
12
-
-
33645027986
-
Stochastic protein expression in individual cells at the single molecule level
-
doi:10.1038/nature04599
-
Cai L, Friedman N, Xie XS. 2006 Stochastic protein expression in individual cells at the single molecule level. Nature 440, 358-362. (doi:10.1038/nature04599)
-
(2006)
Nature
, vol.440
, pp. 358-362
-
-
Cai, L.1
Friedman, N.2
Xie, X.S.3
-
13
-
-
0036578645
-
Regulation of noise in the expression of a single gene
-
doi:10.1038/ng869
-
Ozbudak EM, Thattai M, Kurtser I, Grossman AD, van Oudenaarden A. 2002 Regulation of noise in the expression of a single gene. Nat. Genet. 31, 69-73. (doi:10.1038/ng869)
-
(2002)
Nat. Genet.
, vol.31
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
Van Oudenaarden, A.5
-
14
-
-
41349119880
-
Stochastic switching as a survival strategy in fluctuating environments
-
doi:10.1038/ng.110
-
Acar M, Mettetal JT, van Oudenaarden A. 2008 Stochastic switching as a survival strategy in fluctuating environments. Nat. Genet. 40, 471-475. (doi:10.1038/ng.110)
-
(2008)
Nat. Genet.
, vol.40
, pp. 471-475
-
-
Acar, M.1
Mettetal, J.T.2
Van Oudenaarden, A.3
-
15
-
-
33745287724
-
Noise in protein expression scales with natural protein abundance
-
doi:10.1038/ng1807
-
Bar-Even A, Paulsson J, Maheshri N, Carmi M, O'Shea E, Pilpel Y, Barkai N. 2006 Noise in protein expression scales with natural protein abundance. Nat. Genet. 38, 636-643. (doi:10.1038/ng1807)
-
(2006)
Nat. Genet.
, vol.38
, pp. 636-643
-
-
Bar-Even, A.1
Paulsson, J.2
Maheshri, N.3
Carmi, M.4
O'Shea, E.5
Pilpel, Y.6
Barkai, N.7
-
16
-
-
33745220278
-
Single-cell proteomic analysis of S. Cerevisiae reveals the architecture of biological noise
-
doi:10.1038/nature04785
-
Newman JRS, Ghaemmaghami S, Ihmels J, Breslow DK, Noble M, DeRisi JL, Weissman JS. 2006 Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nat. Genet. 441, 840-846. (doi:10.1038/ nature04785)
-
(2006)
Nat. Genet.
, vol.441
, pp. 840-846
-
-
Newman, J.R.S.1
Ghaemmaghami, S.2
Ihmels, J.3
Breslow, D.K.4
Noble, M.5
DeRisi, J.L.6
Weissman, J.S.7
-
17
-
-
0242416539
-
Noise in eukaryotic gene expression
-
doi:10.1038/nature01546
-
Blake WJ, Kaern M, Cantor CR, Collins JJ. 2003 Noise in eukaryotic gene expression. Nature 422, 633-637. (doi:10.1038/nature01546)
-
(2003)
Nature
, vol.422
, pp. 633-637
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
Collins, J.J.4
-
18
-
-
16644373292
-
Noise minimization in eukaryotic gene expression
-
doi:10.1371/journal.pbio.0020137
-
Fraser HB, Hirsh AE, Giaever G, Kumm J, Eisen MB. 2004 Noise minimization in eukaryotic gene expression. PLoS Biol. 2, e137. (doi:10.1371/journal.pbio. 0020137)
-
(2004)
PLoS Biol.
, vol.2
-
-
Fraser, H.B.1
Hirsh, A.E.2
Giaever, G.3
Kumm, J.4
Eisen, M.B.5
-
19
-
-
84873801555
-
Systematic identification of signal-activated stochastic gene regulation
-
doi:10.1126/science.1231456
-
Munsky B, Neuert G, Tan RZ, Teytelman L, Khammash M, van Oudenaarden A. 2013 Systematic identification of signal-activated stochastic gene regulation. Science 339, 584-587. (doi:10.1126/science.1231456)
-
(2013)
Science
, vol.339
, pp. 584-587
-
-
Munsky, B.1
Neuert, G.2
Tan, R.Z.3
Teytelman, L.4
Khammash, M.5
Van Oudenaarden, A.6
-
20
-
-
22744441386
-
Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity
-
doi:10.1016/j.cell.2005.06.006
-
Weinberger L, Burnett J, Toettcher J, Arkin A, Schaffer D. 2005 Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity. Cell 122, 169-182. (doi:10.1016/j.cell. 2005.06.006)
-
(2005)
Cell
, vol.122
, pp. 169-182
-
-
Weinberger, L.1
Burnett, J.2
Toettcher, J.3
Arkin, A.4
Schaffer, D.5
-
21
-
-
41349095731
-
Transient-mediated fate determination in a transcriptional circuit of HIV
-
doi:10.1038/ng.116
-
Weinberger LS, Dar RD, Simpson ML. 2008 Transient-mediated fate determination in a transcriptional circuit of HIV. Nat. Genet. 40, 466-470. (doi:10.1038/ng.116)
-
(2008)
Nat. Genet.
, vol.40
, pp. 466-470
-
-
Weinberger, L.S.1
Dar, R.D.2
Simpson, M.L.3
-
22
-
-
68049129695
-
Stochastic gene expression as a molecular switch for viral latency
-
doi:10.1016/j.mib.2009.06.016
-
Singh A, Weinberger LS. 2009 Stochastic gene expression as a molecular switch for viral latency. Curr. Opin. Microbiol. 12, 460-466. (doi:10.1016/j.mib.2009.06.016)
-
(2009)
Curr. Opin. Microbiol.
, vol.12
, pp. 460-466
-
-
Singh, A.1
Weinberger, L.S.2
-
23
-
-
70349466529
-
Population context determines cell-to-cell variability in endocytosis and virus infection
-
doi:10.1038/nature08282
-
Snijder B, Sacher R, Ramo P, Damm EM, Liberali P, Pelkmans L. 2009 Population context determines cell-to-cell variability in endocytosis and virus infection. Nature 461, 520-523. (doi:10.1038/nature08282)
-
(2009)
Nature
, vol.461
, pp. 520-523
-
-
Snijder, B.1
Sacher, R.2
Ramo, P.3
Damm, E.M.4
Liberali, P.5
Pelkmans, L.6
-
24
-
-
29444442484
-
Switches in bacteriophage lambda development
-
doi:10.1146/annurev.genet.39.073003.113656
-
Oppenheim AB, Kobiler O, Stavans J, Court DL, Adhya S. 2005 Switches in bacteriophage lambda development. Annu. Rev. Genet. 39, 409-429. (doi:10.1146/annurev.genet.39.073003.113656)
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 409-429
-
-
Oppenheim, A.B.1
Kobiler, O.2
Stavans, J.3
Court, D.L.4
Adhya, S.5
-
25
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage infected Escherichia coli cells
-
Arkin AP, Ross J, McAdams HH. 1998 Stochastic kinetic analysis of developmental pathway bifurcation in phage-infected Escherichia coli cells. Genetics 149, 1633-1648. (Pubitemid 28375939)
-
(1998)
Genetics
, vol.149
, Issue.4
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.H.3
-
26
-
-
79953657876
-
To lyse or not to lyse: Transient-mediated stochastic fate determination in cells infected by bacteriophages
-
doi:10.1371/journal.pcbi.1002006
-
Joh RI, Weitz JS. 2011 To lyse or not to lyse: transient-mediated stochastic fate determination in cells infected by bacteriophages. PLoS Comput. Biol. 7, e1002006. (doi:10.1371/journal.pcbi.1002006)
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Joh, R.I.1
Weitz, J.S.2
-
27
-
-
55549137424
-
Collective decision making in bacterial viruses
-
Weitz JS, Mileyko Y, Joh RI, Voit EO. 2008 Collective decision making in bacterial viruses. PLoS Comput. Biol. 95, 2673-2680.
-
(2008)
PLoS Comput. Biol.
, vol.95
, pp. 2673-2680
-
-
Weitz, J.S.1
Mileyko, Y.2
Joh, R.I.3
Voit, E.O.4
-
29
-
-
15444369858
-
Quantitative kinetic analysis of the bacteriophage l genetic network
-
doi:10.1073/pnas.0500670102
-
Kobiler O, Rokney A, Friedman N, Court DL, Stavans J, Oppenheim AB. 2005 Quantitative kinetic analysis of the bacteriophage l genetic network. Proc. Natl Acad. Sci. USA 102, 4470-4475. (doi:10.1073/pnas.0500670102)
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 4470-4475
-
-
Kobiler, O.1
Rokney, A.2
Friedman, N.3
Court, D.L.4
Stavans, J.5
Oppenheim, A.B.6
-
30
-
-
84880372200
-
High-resolution view of bacteriophage lambda gene expression by ribosome profiling
-
doi:10.1073/pnas.1309739110
-
Liu X, Jiang H, Gu Z, Roberts JW. 2013 High-resolution view of bacteriophage lambda gene expression by ribosome profiling. Proc. Natl Acad. Sci. USA 110, 11 928-11 933. (doi:10.1073/pnas.1309739110)
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 11928-11933
-
-
Liu, X.1
Jiang, H.2
Gu, Z.3
Roberts, J.W.4
-
31
-
-
79551668033
-
Holin triggering in real time
-
doi:10.1073/pnas.1011921108
-
White R, Chiba S, Pang T, Dewey JS, Savva CG, Holzenburg A, Pogliano K, Young R. 2011 Holin triggering in real time. Proc. Natl Acad. Sci. USA 108, 798-803. (doi:10.1073/pnas.1011921108)
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 798-803
-
-
White, R.1
Chiba, S.2
Pang, T.3
Dewey, J.S.4
Savva, C.G.5
Holzenburg, A.6
Pogliano, K.7
Young, R.8
-
32
-
-
84868557725
-
The spanin complex is essential for lambda lysis
-
doi:10.1128/JB.01245-12
-
Berry J, Rajaure M, Pang T, Young R. 2012 The spanin complex is essential for lambda lysis. J. Bacteriol. 194, 5667-5674. (doi:10.1128/JB.01245-12)
-
(2012)
J. Bacteriol.
, vol.194
, pp. 5667-5674
-
-
Berry, J.1
Rajaure, M.2
Pang, T.3
Young, R.4
-
34
-
-
79960890754
-
Factors influencing lysis time stochasticity in bacteriophage λ
-
doi:10.1186/1471-2180-11-174
-
Dennehy JJ, Wang IN. 2011 Factors influencing lysis time stochasticity in bacteriophage λ. BMC Microbiol. 11, 174. (doi:10.1186/1471-2180-11-174)
-
(2011)
BMC Microbiol.
, vol.11
, pp. 174
-
-
Dennehy, J.J.1
Wang, I.N.2
-
35
-
-
33847022310
-
Noise in timing and precision of gene activities in a genetic cascade
-
doi:10.1038/msb4100113
-
Amir A, Kobiler O, Rokney A, Oppenheim AB, Stavans J. 2007 Noise in timing and precision of gene activities in a genetic cascade. Mol. Syst. Biol. 3, 71. (doi:10.1038/msb4100113)
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 71
-
-
Amir, A.1
Kobiler, O.2
Rokney, A.3
Oppenheim, A.B.4
Stavans, J.5
-
36
-
-
0029020763
-
S gene expression and the timing of lysis by bacteriophage lambda
-
Chang CY, Nam K, Young R. 1995 S gene expression and the timing of lysis by bacteriophage lambda. J. Bacteriol. 177, 3283-3294.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 3283-3294
-
-
Chang, C.Y.1
Nam, K.2
Young, R.3
-
37
-
-
56249130793
-
Analytical distributions for stochastic gene expression
-
doi:10.1073/pnas.0803850105
-
Shahrezaei V, Swain PS. 2008 Analytical distributions for stochastic gene expression. Proc. Natl Acad. Sci. USA 105, 17 256-17 261. (doi:10.1073/pnas. 0803850105)
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 17256-17261
-
-
Shahrezaei, V.1
Swain, P.S.2
-
38
-
-
20344389483
-
Model of stochastic gene expression
-
doi:10.1016/j.plrev.2005.03.003
-
Paulsson J. 2005 Model of stochastic gene expression. Phys. Life Rev. 2, 157-175. (doi:10.1016/j.plrev.2005.03.003)
-
(2005)
Phys. Life Rev.
, vol.2
, pp. 157-175
-
-
Paulsson, J.1
-
39
-
-
33750247101
-
Linking stochastic dynamics to population distribution: An analytical framework of gene expression
-
doi:10.1103/PhysRevLett.97.168302
-
Friedman N, Cai L, Xie XS. 2006 Linking stochastic dynamics to population distribution: an analytical framework of gene expression. Phys. Rev. Lett. 97, 168302. (doi:10.1103/PhysRevLett.97.168302)
-
(2006)
Phys. Rev. Lett.
, vol.97
, pp. 168302
-
-
Friedman, N.1
Cai, L.2
Xie, X.S.3
-
40
-
-
0017833657
-
A model for the statistical fluctuations of protein numbers in a microbial population
-
doi:10.1016/0022-5193(78)90326-0
-
Berg OG. 1978 A model for the statistical fluctuations of protein numbers in a microbial population. J. Theor. Biol. 71, 587-603. (doi:10.1016/0022- 5193(78)90326-0)
-
(1978)
J. Theor. Biol.
, vol.71
, pp. 587-603
-
-
Berg, O.G.1
-
41
-
-
33645033645
-
Probing gene expression in live cells, one protein molecule at a time
-
doi:10.1126/science.1119623
-
Yu J, Xiao J, Ren X, Lao K, Xie XS. 2006 Probing gene expression in live cells, one protein molecule at a time. Science 311, 1600-1603. (doi:10.1126/science.1119623)
-
(2006)
Science
, vol.311
, pp. 1600-1603
-
-
Yu, J.1
Xiao, J.2
Ren, X.3
Lao, K.4
Xie, X.S.5
-
42
-
-
0035193294
-
Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations
-
doi:10.1016/S0006-3495(01)75949-8
-
Kepler TB, Elston TC. 2001 Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. Biophys. J. 81, 3116-3136. (doi:10.1016/S0006-3495(01)75949-8)
-
(2001)
Biophys. J.
, vol.81
, pp. 3116-3136
-
-
Kepler, T.B.1
Elston, T.C.2
-
43
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
doi:10.1371/journal.pbio.0040309
-
Raj A, Peskin CS, Tranchina D, Vargas DY, Tyagi S. 2006 Stochastic mRNA synthesis in mammalian cells. PLoS Biol. 4, e309. (doi:10.1371/journal.pbio. 0040309)
-
(2006)
PLoS Biol.
, vol.4
-
-
Raj, A.1
Peskin, C.S.2
Tranchina, D.3
Vargas, D.Y.4
Tyagi, S.5
-
44
-
-
84867914780
-
Transcriptional burst frequency and burst size are equally modulated across the human genome
-
doi:10.1073/pnas.1213530109
-
Dar RD, Razooky BS, Singh A, Trimeloni T, McCollum J, Cox C, Simpson ML, Weinberger LS. 2012 Transcriptional burst frequency and burst size are equally modulated across the human genome. Proc. Natl Acad. Sci. USA 109, 17 454-17 459. (doi:10.1073/pnas.1213530109)
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 17454-17459
-
-
Dar, R.D.1
Razooky, B.S.2
Singh, A.3
Trimeloni, T.4
McCollum, J.5
Cox, C.6
Simpson, M.L.7
Weinberger, L.S.8
-
45
-
-
84866083176
-
Dynamics of protein noise can distinguish between alternate sources of gene-expression variability
-
doi:10.1038/msb.2012.38
-
Singh A, Razooky BS, Dar RD, Weinberger LS. 2012 Dynamics of protein noise can distinguish between alternate sources of gene-expression variability. Mol. Syst. Biol. 8, 607. (doi:10.1038/msb.2012.38)
-
(2012)
Mol. Syst. Biol.
, vol.8
, pp. 607
-
-
Singh, A.1
Razooky, B.S.2
Dar, R.D.3
Weinberger, L.S.4
-
46
-
-
28944434119
-
Real-time kinetics of gene activity in individual bacteria
-
doi:10.1016/j.cell.2005.09.031
-
Golding I, Paulsson J, Zawilski SM, Cox EC. 2005 Real-time kinetics of gene activity in individual bacteria. Cell 123, 1025-1036. (doi:10.1016/j.cell. 2005.09.031)
-
(2005)
Cell
, vol.123
, pp. 1025-1036
-
-
Golding, I.1
Paulsson, J.2
Zawilski, S.M.3
Cox, E.C.4
-
47
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
doi:10.1016/0021-9991(76)90041-3
-
Gillespie DT. 1976 A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comput. Phys. 22, 403-434. (doi:10.1016/0021-9991(76)90041-3)
-
(1976)
J. Comput. Phys.
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
48
-
-
84870562146
-
Noise-mean relationship in mutated promoters
-
doi:10.1101/gr.139378.112
-
Hornung G, Bar-Ziv R, Rosin D, Tokuriki N, Tawfik DS, Oren M, Barkai N. 2012 Noise-mean relationship in mutated promoters. Genome Res. 22, 2409-2417. (doi:10.1101/gr.139378.112)
-
(2012)
Genome Res.
, vol.22
, pp. 2409-2417
-
-
Hornung, G.1
Bar-Ziv, R.2
Rosin, D.3
Tokuriki, N.4
Tawfik, D.S.5
Oren, M.6
Barkai, N.7
-
49
-
-
77951604611
-
Transcriptional bursting from the HIV-1 promoter is a significant source of stochastic noise in HIV-1 gene expression
-
doi:10.1016/j.bpj.2010.03.001
-
Singh A, Razooky B, Cox CD, Simpson ML, Weinberger LS. 2010 Transcriptional bursting from the HIV-1 promoter is a significant source of stochastic noise in HIV-1 gene expression. Biophys. J. 98, L32-L34. (doi:10.1016/j.bpj.2010.03.001)
-
(2010)
Biophys. J.
, vol.98
-
-
Singh, A.1
Razooky, B.2
Cox, C.D.3
Simpson, M.L.4
Weinberger, L.S.5
-
50
-
-
0029764787
-
Two beginnings for a single purpose: The dual-start holins in the regulation of phage lysis
-
doi:10.1046/j.1365-2958.1996.331395.x
-
Blasi U, Young R. 1996 Two beginnings for a single purpose: the dual-start holins in the regulation of phage lysis. Mol. Microbiol. 21, 675-682. (doi:10.1046/j.1365-2958.1996.331395.x)
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 675-682
-
-
Blasi, U.1
Young, R.2
-
51
-
-
0033768655
-
Holins: The protein clocks of bacteriophage infections
-
doi:10.1146/annurev.micro.54.1.799
-
Wang IN, Smith DL, Young R. 2000 Holins: the protein clocks of bacteriophage infections. Annu. Rev. Microbiol. 54, 799-825. (doi:10.1146/annurev.micro.54.1.799)
-
(2000)
Annu. Rev. Microbiol.
, vol.54
, pp. 799-825
-
-
Wang, I.N.1
Smith, D.L.2
Young, R.3
-
52
-
-
0034162940
-
Phages will out: Strategies of host cell lysis
-
doi:10.1016/S0966-842X(00)01705-4
-
Young R, Wang IN, Roof WD. 2000 Phages will out: strategies of host cell lysis. Trends Microbiol. 8, 120-128. (doi:10.1016/S0966-842X(00)01705-4)
-
(2000)
Trends Microbiol.
, vol.8
, pp. 120-128
-
-
Young, R.1
Wang, I.N.2
Roof, W.D.3
-
53
-
-
0342980358
-
Biochemical and genetic evidence for three transmembrane domains in the class I holin, lambda S
-
doi:10.1074/jbc.275.2.769
-
Gründling A, Bläsi U, Young R. 2000 Biochemical and genetic evidence for three transmembrane domains in the class I holin, lambda S. J. Biol. Chem. 275, 769-776. (doi:10.1074/jbc.275.2.769)
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 769-776
-
-
Gründling, A.1
Bläsi, U.2
Young, R.3
-
54
-
-
0033758762
-
Genetic and biochemical analysis of dimer and oligomer interactions of the λ S holin
-
doi:10.1128/JB.182.21.6082-6090.2000
-
Gründling A, Bläsi U, Young R. 2000 Genetic and biochemical analysis of dimer and oligomer interactions of the λ S holin. J. Bacteriol. 182, 6082-6090. (doi:10.1128/JB.182.21.6082-6090.2000)
-
(2000)
J. Bacteriol.
, vol.182
, pp. 6082-6090
-
-
Gründling, A.1
Bläsi, U.2
Young, R.3
-
55
-
-
0033758938
-
Dimerization between the holin and holin inhibitor of phage l
-
doi:10.1128/JB.182.21.6075-6081.2000
-
Gründling A, Smith DL, Bläsi U, Young R. 2000 Dimerization between the holin and holin inhibitor of phage l. J. Bacteriol. 182, 6075-6081. (doi:10.1128/JB.182.21.6075-6081.2000)
-
(2000)
J. Bacteriol.
, vol.182
, pp. 6075-6081
-
-
Gründling, A.1
Smith, D.L.2
Bläsi, U.3
Young, R.4
-
56
-
-
34249079154
-
Network motifs: Theory and experimental approaches
-
doi:10.1038/nrg2102
-
Alon U. 2007 Network motifs: theory and experimental approaches. Nat. Rev. Genet. 8, 450-461. (doi:10.1038/nrg2102)
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 450-461
-
-
Alon, U.1
-
57
-
-
79952302623
-
The role of incoherent microRNA-mediated feedforward loops in noise buffering
-
doi:10.1371/journal.pcbi.1001101
-
Osella M, Bosia C, Cora D, Caselle M. 2011 The role of incoherent microRNA-mediated feedforward loops in noise buffering. PLoS Comput. Biol. 7, e1001101. (doi:10.1371/journal.pcbi.1001101)
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Osella, M.1
Bosia, C.2
Cora, D.3
Caselle, M.4
-
58
-
-
84877259595
-
Effects of post-transcriptional regulation on phenotypic noise in Escherichia coli
-
doi:10.1093/nar/gkt184
-
Arbel-Goren R, Tal A, Friedlander T, Meshner S, Costantino N, Court DL, Stavans J. 2013 Effects of post-transcriptional regulation on phenotypic noise in Escherichia coli. Nucleic Acids Res. 41, 4825-4834. (doi:10.1093/nar/gkt184)
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 4825-4834
-
-
Arbel-Goren, R.1
Tal, A.2
Friedlander, T.3
Meshner, S.4
Costantino, N.5
Court, D.L.6
Stavans, J.7
-
59
-
-
84887120736
-
Dampening of expression oscillations by synchronous regulation of a microRNA and its target
-
hyun Kim D, Grun D, van Oudenaarden A. 2013 Dampening of expression oscillations by synchronous regulation of a microRNA and its target. Nat. Genet. 45, 1337-1344.
-
(2013)
Nat. Genet.
, vol.45
, pp. 1337-1344
-
-
Hyun Kim, D.1
Grun, D.2
Van Oudenaarden, A.3
-
60
-
-
33644778734
-
Lysis timing and bacteriophage fitness
-
doi:10.1534/genetics.105.045922
-
Wang IN. 2006 Lysis timing and bacteriophage fitness. Genetics 172, 17-26. (doi:10.1534/genetics.105.045922)
-
(2006)
Genetics
, vol.172
, pp. 17-26
-
-
Wang, I.N.1
-
61
-
-
0035461237
-
Bacteriophage latent-period evolution as a response to resource availability
-
doi:10.1128/AEM.67.9.4233-4241.2001
-
Abedon ST, Herschler TD, Stopar D. 2001 Bacteriophage latent-period evolution as a response to resource availability. Appl. Environ. Microbiol. 67, 4233-4241. (doi:10.1128/AEM.67.9.4233-4241.2001)
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4233-4241
-
-
Abedon, S.T.1
Herschler, T.D.2
Stopar, D.3
-
62
-
-
2142693752
-
Experimental examination of bacteriophage latent-period evolution as a response to bacterial availability
-
doi:10.1128/AEM.69.12.7499-7506.2003
-
Abedon ST, Hyman P, Thomas C. 2003 Experimental examination of bacteriophage latent-period evolution as a response to bacterial availability. Appl. Environ. Microbiol. 69, 7499-7506. (doi:10.1128/AEM.69.12.7499-7506.2003)
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7499-7506
-
-
Abedon, S.T.1
Hyman, P.2
Thomas, C.3
-
63
-
-
84858317177
-
A common, non-optimal phenotypic endpoint in experimental adaptations of bacteriophage lysis time
-
doi:10.1186/1471-2148-12-37
-
Chantranupong L, Heineman R. 2012 A common, non-optimal phenotypic endpoint in experimental adaptations of bacteriophage lysis time. BMC Evol. Biol. 12, 37. (doi:10.1186/1471-2148-12-37)
-
(2012)
BMC Evol. Biol.
, vol.12
, pp. 37
-
-
Chantranupong, L.1
Heineman, R.2
-
64
-
-
0029911008
-
The evolution of phage lysis timing
-
doi:10.1007/BF01237884
-
Wang IN, Dykhuizen DE, Slobodkin LB. 1996 The evolution of phage lysis timing. Evol. Ecol. 10, 545-558. (doi:10.1007/BF01237884)
-
(1996)
Evol. Ecol.
, vol.10
, pp. 545-558
-
-
Wang, I.N.1
Dykhuizen, D.E.2
Slobodkin, L.B.3
-
65
-
-
33746045633
-
Optimality models of phage life history and parallels in disease evolution
-
doi:10.1016/j.jtbi.2006.01.027
-
Bull JJ. 2006 Optimality models of phage life history and parallels in disease evolution. J. Theor. Biol. 241, 928-938. (doi:10.1016/j.jtbi.2006.01. 027)
-
(2006)
J. Theor. Biol.
, vol.241
, pp. 928-938
-
-
Bull, J.J.1
-
66
-
-
34347354221
-
Testing optimality with experimental evolution: Lysis time in a bacteriophage
-
doi:10.1111/j.1558-5646.2007.00132.x
-
Heineman RH, Bull JJ. 2007 Testing optimality with experimental evolution: lysis time in a bacteriophage. Evolution 61, 1695-1709. (doi:10.1111/j.1558-5646.2007.00132.x)
-
(2007)
Evolution
, vol.61
, pp. 1695-1709
-
-
Heineman, R.H.1
Bull, J.J.2
-
67
-
-
0035902599
-
Intrinsic noise in gene regulatory networks
-
doi:10.1073/pnas.151588598
-
Thattai M, van Oudenaarden A. 2001 Intrinsic noise in gene regulatory networks. Proc. Natl Acad. Sci. USA 98, 8614-8619. (doi:10.1073/pnas.151588598)
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 8614-8619
-
-
Thattai, M.1
Van Oudenaarden, A.2
-
68
-
-
0031029852
-
Stochastic mechanisms in gene expression
-
doi:10.1073/pnas.94.3.814
-
McAdams HH, Arkin AP. 1997 Stochastic mechanisms in gene expression. Proc. Natl Acad. Sci. USA 94, 814-819. (doi:10.1073/pnas.94.3.814)
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 814-819
-
-
McAdams, H.H.1
Arkin, A.P.2
-
69
-
-
0001258914
-
The burst size distribution in the growth of bacterial viruses (bacteriophages)
-
Delbrück M. 1945 The burst size distribution in the growth of bacterial viruses (bacteriophages). J. Bacteriol. 50, 131-135.
-
(1945)
J. Bacteriol.
, vol.50
, pp. 131-135
-
-
Delbrück, M.1
-
70
-
-
60349083295
-
Growth of an RNA virus in single cells reveals a broad fitness distribution
-
doi:10.1016/j.virol.2008.10.031
-
Zhu Y, Yongky A, Yin J. 2009 Growth of an RNA virus in single cells reveals a broad fitness distribution. Virology 385, 39-46. (doi:10.1016/j.virol. 2008.10.031)
-
(2009)
Virology
, vol.385
, pp. 39-46
-
-
Zhu, Y.1
Yongky, A.2
Yin, J.3
-
71
-
-
84856235072
-
Kinetics of virus production from single cells
-
doi:10.1016/j.virol.2011.12.005
-
Timm A, Yin J. 2012 Kinetics of virus production from single cells. Virology 424, 11-17. (doi:10.1016/j.virol.2011.12.005)
-
(2012)
Virology
, vol.424
, pp. 11-17
-
-
Timm, A.1
Yin, J.2
|