-
1
-
-
0001102957
-
A revision of the large barbus (Pisces, Cyprinidae) of Lake Malawi with a reconstruction of the history of the Southern African Rift-Valley Lakes
-
Banister K.E., Clarke M.A. A revision of the large barbus (Pisces, Cyprinidae) of Lake Malawi with a reconstruction of the history of the Southern African Rift-Valley Lakes. J. Nat. Hist. 1980, 14:483-542.
-
(1980)
J. Nat. Hist.
, vol.14
, pp. 483-542
-
-
Banister, K.E.1
Clarke, M.A.2
-
2
-
-
77953596689
-
Evolving entities: towards a unified framework for understanding diversity at the species and higher levels
-
Barraclough T.G. Evolving entities: towards a unified framework for understanding diversity at the species and higher levels. Philos. Trans. R. Soc. Lond. B Biol. Sci. 2010, 365:1801-1813.
-
(2010)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.365
, pp. 1801-1813
-
-
Barraclough, T.G.1
-
3
-
-
84883482283
-
Naive binning improves phylogenomic analyses
-
Bayzid M.S., Warnow T. Naive binning improves phylogenomic analyses. Bioinformatics 2013, 29:2277-2284.
-
(2013)
Bioinformatics
, vol.29
, pp. 2277-2284
-
-
Bayzid, M.S.1
Warnow, T.2
-
4
-
-
0036931408
-
The (super)tree of life: procedures, problems, and prospects
-
Bininda-Emonds O.R.P., Gittleman J.L., Steel M.A. The (super)tree of life: procedures, problems, and prospects. Annu. Rev. Ecol. Syst. 2002, 33:265-289.
-
(2002)
Annu. Rev. Ecol. Syst.
, vol.33
, pp. 265-289
-
-
Bininda-Emonds, O.R.P.1
Gittleman, J.L.2
Steel, M.A.3
-
5
-
-
0033093075
-
Evolution of the ribosomal RNA internal transcribed spacer one (ITS-1) in cichlid fishes of the Lake Victoria region
-
Booton G.C., Kaufman L., Chandler M., Oguto-Ohwayo R., Duan W., Fuerst P.A. Evolution of the ribosomal RNA internal transcribed spacer one (ITS-1) in cichlid fishes of the Lake Victoria region. Mol. Phylogenet. Evol. 1999, 11:273-282.
-
(1999)
Mol. Phylogenet. Evol.
, vol.11
, pp. 273-282
-
-
Booton, G.C.1
Kaufman, L.2
Chandler, M.3
Oguto-Ohwayo, R.4
Duan, W.5
Fuerst, P.A.6
-
6
-
-
11144306898
-
Mitochondrial phylogeny of the Cyprichromini, a lineage of open-water cichlid fishes endemic to Lake Tanganyika, East Africa
-
Brandstatter A., Salzburger W., Sturmbauer C. Mitochondrial phylogeny of the Cyprichromini, a lineage of open-water cichlid fishes endemic to Lake Tanganyika, East Africa. Mol. Phylogenet. Evol. 2005, 34:382-391.
-
(2005)
Mol. Phylogenet. Evol.
, vol.34
, pp. 382-391
-
-
Brandstatter, A.1
Salzburger, W.2
Sturmbauer, C.3
-
7
-
-
84864697376
-
Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis
-
Bryant D., Bouckaert R., Felsenstein J., Rosenberg N.A., RoyChoudhury A. Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis. Mol. Biol. Evol. 2012, 29:1917-1932.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1917-1932
-
-
Bryant, D.1
Bouckaert, R.2
Felsenstein, J.3
Rosenberg, N.A.4
RoyChoudhury, A.5
-
9
-
-
27744442787
-
Comparative phylogenetic analyses of the adaptive radiation of Lake Tanganyika cichlid fish: nuclear sequences are less homoplasious but also less informative than mitochondrial DNA
-
Clabaut C., Salzburger W., Meyer A. Comparative phylogenetic analyses of the adaptive radiation of Lake Tanganyika cichlid fish: nuclear sequences are less homoplasious but also less informative than mitochondrial DNA. J. Mol. Evol. 2005, 61:666-681.
-
(2005)
J. Mol. Evol.
, vol.61
, pp. 666-681
-
-
Clabaut, C.1
Salzburger, W.2
Meyer, A.3
-
10
-
-
84879881631
-
Estimating the age of formation of lakes - an example from Lake Tanganyika, East-African Rift System
-
Cohen A.S., Soreghan M.J., Scholz C.A. Estimating the age of formation of lakes - an example from Lake Tanganyika, East-African Rift System. Geology 1993, 21:511-514.
-
(1993)
Geology
, vol.21
, pp. 511-514
-
-
Cohen, A.S.1
Soreghan, M.J.2
Scholz, C.A.3
-
11
-
-
35148857230
-
Phylogenetic relationships of the Lake Tanganyika cichlid tribe Lamprologini: the story from mitochondrial DNA
-
Day J.J., Santini S., Garcia-Moreno J. Phylogenetic relationships of the Lake Tanganyika cichlid tribe Lamprologini: the story from mitochondrial DNA. Mol. Phylogenet. Evol. 2007, 45:629-642.
-
(2007)
Mol. Phylogenet. Evol.
, vol.45
, pp. 629-642
-
-
Day, J.J.1
Santini, S.2
Garcia-Moreno, J.3
-
12
-
-
33646928341
-
Discordance of species trees with their most likely gene trees
-
Degnan J.H., Rosenberg N.A. Discordance of species trees with their most likely gene trees. PLoS Genet. 2006, 2:e68.
-
(2006)
PLoS Genet.
, vol.2
-
-
Degnan, J.H.1
Rosenberg, N.A.2
-
13
-
-
84857993608
-
The probability distribution of ranked gene trees on a species tree
-
Degnan J.H., Rosenberg N.A., Stadler T. The probability distribution of ranked gene trees on a species tree. Math. Biosci. 2012, 235:45-55.
-
(2012)
Math. Biosci.
, vol.235
, pp. 45-55
-
-
Degnan, J.H.1
Rosenberg, N.A.2
Stadler, T.3
-
14
-
-
13244292527
-
Gene tree distributions under the coalescent process
-
Degnan J.H., Salter L.A. Gene tree distributions under the coalescent process. Evolution 2005, 59:24-37.
-
(2005)
Evolution
, vol.59
, pp. 24-37
-
-
Degnan, J.H.1
Salter, L.A.2
-
15
-
-
18844371528
-
Evolutionary relationships of the Limnochromini, a tribe of benthic deepwater cichlid fish endemic to Lake Tanganyika, East Africa
-
Duftner N., Koblmuller S., Sturmbauer C. Evolutionary relationships of the Limnochromini, a tribe of benthic deepwater cichlid fish endemic to Lake Tanganyika, East Africa. J. Mol. Evol. 2005, 60:277-289.
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 277-289
-
-
Duftner, N.1
Koblmuller, S.2
Sturmbauer, C.3
-
16
-
-
56549103832
-
Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow
-
Eckert A.J., Carstens B.C. Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow. Mol. Phylogenet. Evol. 2008, 49:142-152.
-
(2008)
Mol. Phylogenet. Evol.
, vol.49
, pp. 142-152
-
-
Eckert, A.J.1
Carstens, B.C.2
-
18
-
-
34948878142
-
Nuclear and mitochondrial data reveal different evolutionary processes in the Lake Tanganyika cichlid genus Tropheus
-
Egger B., Koblmuller S., Sturmbauer C., Sefc K.M. Nuclear and mitochondrial data reveal different evolutionary processes in the Lake Tanganyika cichlid genus Tropheus. BMC Evol. Biol. 2007, 7:137.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 137
-
-
Egger, B.1
Koblmuller, S.2
Sturmbauer, C.3
Sefc, K.M.4
-
19
-
-
79955092139
-
Estimating species trees using approximate Bayesian computation
-
Fan H.H., Kubatko L.S. Estimating species trees using approximate Bayesian computation. Mol. Phylogenet. Evol. 2011, 59:354-363.
-
(2011)
Mol. Phylogenet. Evol.
, vol.59
, pp. 354-363
-
-
Fan, H.H.1
Kubatko, L.S.2
-
20
-
-
0034655665
-
Total evidence: molecules, morphology, and the phylogenetics of cichlid fishes
-
Farias I.P., Orti G., Meyer A. Total evidence: molecules, morphology, and the phylogenetics of cichlid fishes. J. Exp. Zool. 2000, 288:76-92.
-
(2000)
J. Exp. Zool.
, vol.288
, pp. 76-92
-
-
Farias, I.P.1
Orti, G.2
Meyer, A.3
-
21
-
-
0034943229
-
The cytochrome b gene as a phylogenetic marker: the limits of resolution for analyzing relationships among cichlid fishes
-
Farias I.P., Orti G., Sampaio I., Schneider H., Meyer A. The cytochrome b gene as a phylogenetic marker: the limits of resolution for analyzing relationships among cichlid fishes. J. Mol. Evol. 2001, 53:89-103.
-
(2001)
J. Mol. Evol.
, vol.53
, pp. 89-103
-
-
Farias, I.P.1
Orti, G.2
Sampaio, I.3
Schneider, H.4
Meyer, A.5
-
22
-
-
34548481728
-
Evolution of a cichlid fish in a Lake Malawi satellite lake
-
Genner M.J., Nichols P., Carvalho G.R., Robinson R.L., Shaw P.W., Smith A., Turner G.F. Evolution of a cichlid fish in a Lake Malawi satellite lake. Proc. R. Soc. Lond. B Biol. Sci. 2007, 274:2249-2257.
-
(2007)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.274
, pp. 2249-2257
-
-
Genner, M.J.1
Nichols, P.2
Carvalho, G.R.3
Robinson, R.L.4
Shaw, P.W.5
Smith, A.6
Turner, G.F.7
-
23
-
-
34548359113
-
Age of cichlids: new dates for ancient lake fish radiations
-
Genner M.J., Seehausen O., Lunt D.H., Joyce D.A., Shaw P.W., Carvalho G.R., Turner G.F. Age of cichlids: new dates for ancient lake fish radiations. Mol. Biol. Evol. 2007, 24:1269-1282.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1269-1282
-
-
Genner, M.J.1
Seehausen, O.2
Lunt, D.H.3
Joyce, D.A.4
Shaw, P.W.5
Carvalho, G.R.6
Turner, G.F.7
-
24
-
-
0001926677
-
Cichlid fishes of Lake Victoria, East Africa: biology and evolution of a species flock
-
Greenwood P.H. Cichlid fishes of Lake Victoria, East Africa: biology and evolution of a species flock. Bull. Br. Mus. Nat. Hist. Zool. Suppl. 1974, 6:1-134.
-
(1974)
Bull. Br. Mus. Nat. Hist. Zool. Suppl.
, vol.6
, pp. 1-134
-
-
Greenwood, P.H.1
-
25
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (Version 3.2)
-
Felsenstein J. PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 1989, 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
26
-
-
77249086587
-
Bayesian inference of species trees from multilocus data
-
Heled J., Drummond A.J. Bayesian inference of species trees from multilocus data. Mol. Biol. Evol. 2010, 27:570-580.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 570-580
-
-
Heled, J.1
Drummond, A.J.2
-
27
-
-
77958059433
-
Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods
-
Huang H., He Q., Kubatko L.S., Knowles L.L. Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods. Syst. Biol. 2010, 59:573-583.
-
(2010)
Syst. Biol.
, vol.59
, pp. 573-583
-
-
Huang, H.1
He, Q.2
Kubatko, L.S.3
Knowles, L.L.4
-
28
-
-
70450237691
-
What is the danger of the anomaly zone for empirical phylogenetics?
-
Huang H., Knowles L.L. What is the danger of the anomaly zone for empirical phylogenetics?. Syst. Biol. 2009, 58:527-536.
-
(2009)
Syst. Biol.
, vol.58
, pp. 527-536
-
-
Huang, H.1
Knowles, L.L.2
-
29
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
Hudson R.R. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 2002, 18:337-338.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.R.1
-
30
-
-
0036695118
-
Mathematical consequences of the genealogical species concept
-
Hudson R.R., Coyne J.A. Mathematical consequences of the genealogical species concept. Evolution 2002, 56:1557-1565.
-
(2002)
Evolution
, vol.56
, pp. 1557-1565
-
-
Hudson, R.R.1
Coyne, J.A.2
-
31
-
-
0034016408
-
The holocene history of Lake Victoria
-
Johnson T.C., Kelts K., Odada E. The holocene history of Lake Victoria. Ambio 2000, 29:2-11.
-
(2000)
Ambio
, vol.29
, pp. 2-11
-
-
Johnson, T.C.1
Kelts, K.2
Odada, E.3
-
32
-
-
18344370116
-
An extant cichlid fish radiation emerged in an extinct Pleistocene lake
-
Joyce D.A., Lunt D.H., Bills R., Turner G.F., Katongo C., Duftner N., Sturmbauer C., Seehausen O. An extant cichlid fish radiation emerged in an extinct Pleistocene lake. Nature 2005, 435:90-95.
-
(2005)
Nature
, vol.435
, pp. 90-95
-
-
Joyce, D.A.1
Lunt, D.H.2
Bills, R.3
Turner, G.F.4
Katongo, C.5
Duftner, N.6
Sturmbauer, C.7
Seehausen, O.8
-
33
-
-
45849088450
-
Resolving species phylogenies of recent evolutionary radiations
-
Knowles L.L., Chan Y.H. Resolving species phylogenies of recent evolutionary radiations. Ann. Missouri Bot. Gard. 2008, 95:224-231.
-
(2008)
Ann. Missouri Bot. Gard.
, vol.95
, pp. 224-231
-
-
Knowles, L.L.1
Chan, Y.H.2
-
34
-
-
77958056150
-
Estimating species trees: an introduction to concepts and models
-
Wiley-Blackwell, New Jersey, L.L. Knowles, L.S. Kubatko (Eds.)
-
Knowles L.L., Kubatko L.S. Estimating species trees: an introduction to concepts and models. Estimating Species Trees: Practical and Theoretical Aspects 2010, 232. Wiley-Blackwell, New Jersey. L.L. Knowles, L.S. Kubatko (Eds.).
-
(2010)
Estimating Species Trees: Practical and Theoretical Aspects
, pp. 232
-
-
Knowles, L.L.1
Kubatko, L.S.2
-
35
-
-
18844444533
-
Ancient divergence in bathypelagic Lake Tanganyika deepwater cichlids: mitochondrial phylogeny of the tribe Bathybatini
-
Koblmuller S., Duftner N., Katongo C., Phiri H., Sturmbauer C. Ancient divergence in bathypelagic Lake Tanganyika deepwater cichlids: mitochondrial phylogeny of the tribe Bathybatini. J. Mol. Evol. 2005, 60:297-314.
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 297-314
-
-
Koblmuller, S.1
Duftner, N.2
Katongo, C.3
Phiri, H.4
Sturmbauer, C.5
-
36
-
-
33846673593
-
Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika - the result of repeated introgressive hybridization
-
Koblmuller S., Duftner N., Sefc K.M., Aibara M., Stipacek M., Blanc M., Egger B., Sturmbauer C. Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika - the result of repeated introgressive hybridization. BMC Evol. Biol. 2007, 7:7.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 7
-
-
Koblmuller, S.1
Duftner, N.2
Sefc, K.M.3
Aibara, M.4
Stipacek, M.5
Blanc, M.6
Egger, B.7
Sturmbauer, C.8
-
37
-
-
34547886115
-
Evolutionary history of Lake Tanganyika's scale-eating cichlid fishes
-
Koblmuller S., Egger B., Sturmbauer C., Sefc K.M. Evolutionary history of Lake Tanganyika's scale-eating cichlid fishes. Mol. Phylogenet. Evol. 2007, 44:1295-1305.
-
(2007)
Mol. Phylogenet. Evol.
, vol.44
, pp. 1295-1305
-
-
Koblmuller, S.1
Egger, B.2
Sturmbauer, C.3
Sefc, K.M.4
-
38
-
-
76849086395
-
Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini
-
Koblmuller S., Egger B., Sturmbauer C., Sefc K.M. Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini. Mol. Phylogenet. Evol. 2010, 55:318-334.
-
(2010)
Mol. Phylogenet. Evol.
, vol.55
, pp. 318-334
-
-
Koblmuller, S.1
Egger, B.2
Sturmbauer, C.3
Sefc, K.M.4
-
39
-
-
18544397593
-
Evolutionary relationships in the sand-dwelling cichlid lineage of Lake Tanganyika suggest multiple colonization of rocky habitats and convergent origin of biparental mouthbrooding
-
Koblmuller S., Salzburger W., Sturmbauer C. Evolutionary relationships in the sand-dwelling cichlid lineage of Lake Tanganyika suggest multiple colonization of rocky habitats and convergent origin of biparental mouthbrooding. J. Mol. Evol. 2004, 58:79-96.
-
(2004)
J. Mol. Evol.
, vol.58
, pp. 79-96
-
-
Koblmuller, S.1
Salzburger, W.2
Sturmbauer, C.3
-
40
-
-
52049112302
-
Age and spread of the haplochromine cichlid fishes in Africa
-
Koblmuller S., Schliewen U.K., Duftner N., Sefc K.M., Katongo C., Sturmbauer C. Age and spread of the haplochromine cichlid fishes in Africa. Mol. Phylogenet. Evol. 2008, 49:153-169.
-
(2008)
Mol. Phylogenet. Evol.
, vol.49
, pp. 153-169
-
-
Koblmuller, S.1
Schliewen, U.K.2
Duftner, N.3
Sefc, K.M.4
Katongo, C.5
Sturmbauer, C.6
-
41
-
-
0029444308
-
Evolution of NADH dehydrogenase subunit 2 in East African cichlid fish
-
Kocher T.D., Conroy J.A., McKaye K.R., Stauffer J.R., Lockwood S.F. Evolution of NADH dehydrogenase subunit 2 in East African cichlid fish. Mol. Phylogenet. Evol. 1995, 4:420-432.
-
(1995)
Mol. Phylogenet. Evol.
, vol.4
, pp. 420-432
-
-
Kocher, T.D.1
Conroy, J.A.2
McKaye, K.R.3
Stauffer, J.R.4
Lockwood, S.F.5
-
42
-
-
63549118031
-
STEM: species tree estimation using maximum likelihood for gene trees under coalescence
-
Kubatko L.S., Carstens B.C., Knowles L.L. STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics 2009, 25:971-973.
-
(2009)
Bioinformatics
, vol.25
, pp. 971-973
-
-
Kubatko, L.S.1
Carstens, B.C.2
Knowles, L.L.3
-
43
-
-
33847302458
-
Inconsistency of phylogenetic estimates from concatenated data under coalescence
-
Kubatko L.S., Degnan J.H. Inconsistency of phylogenetic estimates from concatenated data under coalescence. Syst. Biol. 2007, 56:17-24.
-
(2007)
Syst. Biol.
, vol.56
, pp. 17-24
-
-
Kubatko, L.S.1
Degnan, J.H.2
-
44
-
-
78149256307
-
BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis
-
Larget B.R., Kotha S.K., Dewey C.N., Ane C. BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis. Bioinformatics 2010, 26:2910-2911.
-
(2010)
Bioinformatics
, vol.26
, pp. 2910-2911
-
-
Larget, B.R.1
Kotha, S.K.2
Dewey, C.N.3
Ane, C.4
-
45
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
46
-
-
77957686501
-
A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
-
Liu L., Yu L., Edwards S.V. A maximum pseudo-likelihood approach for estimating species trees under the coalescent model. BMC Evol. Biol. 2010, 10:302.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 302
-
-
Liu, L.1
Yu, L.2
Edwards, S.V.3
-
47
-
-
0031504952
-
Gene trees in species trees
-
Maddison W.P. Gene trees in species trees. Syst. Biol. 1997, 46:523-536.
-
(1997)
Syst. Biol.
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
48
-
-
84901439421
-
-
Mesquite: a modular system for evolutionary analysis. Version 2.75.
-
Maddison W.P. and Maddison D.R., 2011. Mesquite: a modular system for evolutionary analysis. Version 2.75. http://mesquiteproject.org.
-
(2011)
-
-
Maddison, W.P.1
Maddison, D.R.2
-
49
-
-
33644606488
-
Inferring phylogeny despite incomplete lineage sorting
-
Maddison W.P., Knowles L.L. Inferring phylogeny despite incomplete lineage sorting. Syst. Biol. 2006, 55:21-30.
-
(2006)
Syst. Biol.
, vol.55
, pp. 21-30
-
-
Maddison, W.P.1
Knowles, L.L.2
-
50
-
-
0032104366
-
Phylogeny of African cichlid fishes as revealed by molecular markers
-
Mayer W.E., Tichy H., Klein J. Phylogeny of African cichlid fishes as revealed by molecular markers. Heredity 1998, 80:702-714.
-
(1998)
Heredity
, vol.80
, pp. 702-714
-
-
Mayer, W.E.1
Tichy, H.2
Klein, J.3
-
51
-
-
70450265498
-
Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design
-
McCormack J.E., Huang H., Knowles L.L. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design. Syst. Biol. 2009, 58:501-508.
-
(2009)
Syst. Biol.
, vol.58
, pp. 501-508
-
-
McCormack, J.E.1
Huang, H.2
Knowles, L.L.3
-
52
-
-
0025066547
-
Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial-DNA sequences
-
Meyer A., Kocher T.D., Basasibwaki P., Wilson A.C. Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial-DNA sequences. Nature 1990, 347:550-553.
-
(1990)
Nature
, vol.347
, pp. 550-553
-
-
Meyer, A.1
Kocher, T.D.2
Basasibwaki, P.3
Wilson, A.C.4
-
53
-
-
0242487488
-
Performance-based selection of likelihood models for phylogeny estimation
-
Minin V., Abdo Z., Joyce P., Sullivan J. Performance-based selection of likelihood models for phylogeny estimation. Syst. Biol. 2003, 52:674-683.
-
(2003)
Syst. Biol.
, vol.52
, pp. 674-683
-
-
Minin, V.1
Abdo, Z.2
Joyce, P.3
Sullivan, J.4
-
54
-
-
25844516325
-
Phylogenetic MCMC algorithms are misleading on mixtures of trees
-
Mossel E., Vigoda E. Phylogenetic MCMC algorithms are misleading on mixtures of trees. Science 2005, 309:2207-2209.
-
(2005)
Science
, vol.309
, pp. 2207-2209
-
-
Mossel, E.1
Vigoda, E.2
-
55
-
-
0032564470
-
Persistence of neutral polymorphisms in Lake Victoria cichlid fish
-
Nagl S., Tichy H., Mayer W.E., Takahata N., Klein J. Persistence of neutral polymorphisms in Lake Victoria cichlid fish. Proc. Natl. Acad. Sci. USA 1998, 95:14238-14243.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14238-14243
-
-
Nagl, S.1
Tichy, H.2
Mayer, W.E.3
Takahata, N.4
Klein, J.5
-
56
-
-
0034701811
-
The origin and age of haplochromine fishes in Lake Victoria, East Africa
-
Nagl S., Tichy H., Mayer W.E., Takezaki N., Takahata N., Klein J. The origin and age of haplochromine fishes in Lake Victoria, East Africa. Proc. R. Soc. Lond. B Biol. Sci. 2000, 267:1049-1061.
-
(2000)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.267
, pp. 1049-1061
-
-
Nagl, S.1
Tichy, H.2
Mayer, W.E.3
Takezaki, N.4
Takahata, N.5
Klein, J.6
-
57
-
-
70349859861
-
Complete mitochondrial DNA replacement in a Lake Tanganyika cichlid fish
-
Nevado B., Koblmüller S., Sturmbauer C., Snoeks J., Usano-Alemany J., Verheyen E. Complete mitochondrial DNA replacement in a Lake Tanganyika cichlid fish. Mol. Ecol. 2009, 18:4240-4255.
-
(2009)
Mol. Ecol.
, vol.18
, pp. 4240-4255
-
-
Nevado, B.1
Koblmüller, S.2
Sturmbauer, C.3
Snoeks, J.4
Usano-Alemany, J.5
Verheyen, E.6
-
58
-
-
84878665325
-
Microevolutionary processes generate phylogenomic discordance at ancient divergences
-
Oliver J.C. Microevolutionary processes generate phylogenomic discordance at ancient divergences. Evolution 2013, 67:1823-1830.
-
(2013)
Evolution
, vol.67
, pp. 1823-1830
-
-
Oliver, J.C.1
-
59
-
-
0023822631
-
Relationships between gene trees and species trees
-
Pamilo P., Nei M. Relationships between gene trees and species trees. Mol. Biol. Evol. 1988, 5:568-583.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 568-583
-
-
Pamilo, P.1
Nei, M.2
-
60
-
-
0030875153
-
Evolution of the mitochondrial DNA control region in the mbuna (Cichlidae) species flock of Lake Malawi, East Africa
-
Parker A., Kornfield I. Evolution of the mitochondrial DNA control region in the mbuna (Cichlidae) species flock of Lake Malawi, East Africa. J. Mol. Evol. 1997, 45:70-83.
-
(1997)
J. Mol. Evol.
, vol.45
, pp. 70-83
-
-
Parker, A.1
Kornfield, I.2
-
61
-
-
67649964248
-
Ecological limits on clade diversification in higher taxa
-
Rabosky D.L. Ecological limits on clade diversification in higher taxa. Am. Nat. 2009, 173:662-674.
-
(2009)
Am. Nat.
, vol.173
, pp. 662-674
-
-
Rabosky, D.L.1
-
62
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson D.F., Foulds L.R. Comparison of phylogenetic trees. Math. Biosci. 1981, 53:131-147.
-
(1981)
Math. Biosci.
, vol.53
, pp. 131-147
-
-
Robinson, D.F.1
Foulds, L.R.2
-
63
-
-
0033621168
-
Replicated evolution of trophic specializations in an endemic cichlid fish lineage from Lake Tanganyika
-
Ruber L., Verheyen E., Meyer A. Replicated evolution of trophic specializations in an endemic cichlid fish lineage from Lake Tanganyika. Proc. Natl. Acad. Sci. USA 1999, 96:10230-10235.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10230-10235
-
-
Ruber, L.1
Verheyen, E.2
Meyer, A.3
-
64
-
-
17444424650
-
Out of Tanganyika: genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes
-
Salzburger W., Mack T., Verheyen E., Meyer A. Out of Tanganyika: genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes. BMC Evol. Biol. 2005, 5:17.
-
(2005)
BMC Evol. Biol.
, vol.5
, pp. 17
-
-
Salzburger, W.1
Mack, T.2
Verheyen, E.3
Meyer, A.4
-
65
-
-
0036005525
-
Phylogeny of the Lake Tanganyika cichlid species flock and its relationship to the Central and East African haplochromine cichlid fish faunas
-
Salzburger W., Meyer A., Baric S., Verheyen E., Sturmbauer C. Phylogeny of the Lake Tanganyika cichlid species flock and its relationship to the Central and East African haplochromine cichlid fish faunas. Syst. Biol. 2002, 51:113-135.
-
(2002)
Syst. Biol.
, vol.51
, pp. 113-135
-
-
Salzburger, W.1
Meyer, A.2
Baric, S.3
Verheyen, E.4
Sturmbauer, C.5
-
66
-
-
34548399329
-
Gene flow between species of Lake Victoria haplochromine fishes
-
Samonte I.E., Satta Y., Sato A., Tichy H., Takahata N., Klein J. Gene flow between species of Lake Victoria haplochromine fishes. Mol. Biol. Evol. 2007, 24:2069-2080.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 2069-2080
-
-
Samonte, I.E.1
Satta, Y.2
Sato, A.3
Tichy, H.4
Takahata, N.5
Klein, J.6
-
67
-
-
30344485726
-
Phylogenetic relationships of the lamprologine cichlid genus Lepidiolamprologus (Teleostei: Perciformes) based on mitochondrial and nuclear sequences, suggesting introgressive hybridization
-
Schelly R., Salzburger W., Koblmuller S., Duftner N., Sturmbauer C. Phylogenetic relationships of the lamprologine cichlid genus Lepidiolamprologus (Teleostei: Perciformes) based on mitochondrial and nuclear sequences, suggesting introgressive hybridization. Mol. Phylogenet. Evol. 2006, 38:426-438.
-
(2006)
Mol. Phylogenet. Evol.
, vol.38
, pp. 426-438
-
-
Schelly, R.1
Salzburger, W.2
Koblmuller, S.3
Duftner, N.4
Sturmbauer, C.5
-
68
-
-
70049091007
-
The root of the East African cichlid radiations
-
Schwarzer J., Misof B., Tautz D., Schliewen U.K. The root of the East African cichlid radiations. BMC Evol. Biol. 2009, 9:186.
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 186
-
-
Schwarzer, J.1
Misof, B.2
Tautz, D.3
Schliewen, U.K.4
-
69
-
-
84901445804
-
Repeated trans-watershed hybridization among haplochromine cichlids (Cichlidae) was triggered by Neogene landscape evolution Proc
-
Schwarzer J., Swartz E.R., Vreven E., Snoeks J., Cotterill F.P.D., Misof B., Schliewen U.K. Repeated trans-watershed hybridization among haplochromine cichlids (Cichlidae) was triggered by Neogene landscape evolution Proc. R. Soc. Lond. B 2012, 1667:1471-2954.
-
(2012)
R. Soc. Lond. B
, vol.1667
, pp. 1471-2954
-
-
Schwarzer, J.1
Swartz, E.R.2
Vreven, E.3
Snoeks, J.4
Cotterill, F.P.D.5
Misof, B.6
Schliewen, U.K.7
-
70
-
-
33845907943
-
Species-specific population structure in rock-specialized sympatric cichlid species in Lake Tanganyika, East Africa
-
Sefc K.M., Baric S., Salzburger W., Sturmbauer C. Species-specific population structure in rock-specialized sympatric cichlid species in Lake Tanganyika, East Africa. J. Mol. Evol. 2007, 64:33-49.
-
(2007)
J. Mol. Evol.
, vol.64
, pp. 33-49
-
-
Sefc, K.M.1
Baric, S.2
Salzburger, W.3
Sturmbauer, C.4
-
71
-
-
0034703852
-
Genetic population structure indicates sympatric speciation of Lake Malawi pelagic cichlids
-
Shaw P.W., Turner G.F., Idid M.R., Robinson R.L., Carvalho G.R. Genetic population structure indicates sympatric speciation of Lake Malawi pelagic cichlids. Proc. R. Soc. Lond. B Biol. Sci. 2000, 267:2273-2280.
-
(2000)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.267
, pp. 2273-2280
-
-
Shaw, P.W.1
Turner, G.F.2
Idid, M.R.3
Robinson, R.L.4
Carvalho, G.R.5
-
72
-
-
13544270060
-
Phylogeny and biogeography of cichlid fishes (Teleostei: Perciformes: Cichlidae)
-
Sparks J.S., Smith W.L. Phylogeny and biogeography of cichlid fishes (Teleostei: Perciformes: Cichlidae). Cladistics 2004, 20:501-517.
-
(2004)
Cladistics
, vol.20
, pp. 501-517
-
-
Sparks, J.S.1
Smith, W.L.2
-
73
-
-
0031825737
-
Multilocus phylogeny of cichlid fishes (Pisces: Perciformes): evolutionary comparison of microsatellite and single-copy nuclear loci
-
Streelman J.T., Zardoya R., Meyer A., Karl S.A. Multilocus phylogeny of cichlid fishes (Pisces: Perciformes): evolutionary comparison of microsatellite and single-copy nuclear loci. Mol. Biol. Evol. 1998, 15:798-808.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 798-808
-
-
Streelman, J.T.1
Zardoya, R.2
Meyer, A.3
Karl, S.A.4
-
74
-
-
0345331012
-
Evolution of the tribe Tropheini from Lake Tanganyika: synchronized explosive speciation producing multiple evolutionary parallelism
-
Sturmbauer C., Hainz U., Baric S., Verheyen E., Salzburger W. Evolution of the tribe Tropheini from Lake Tanganyika: synchronized explosive speciation producing multiple evolutionary parallelism. Hydrobiologia 2003, 500:51-64.
-
(2003)
Hydrobiologia
, vol.500
, pp. 51-64
-
-
Sturmbauer, C.1
Hainz, U.2
Baric, S.3
Verheyen, E.4
Salzburger, W.5
-
75
-
-
0026616205
-
Genetic-divergence, speciation and morphological stasis in a lineage of African cichlid fishes
-
Sturmbauer C., Meyer A. Genetic-divergence, speciation and morphological stasis in a lineage of African cichlid fishes. Nature 1992, 358:578-581.
-
(1992)
Nature
, vol.358
, pp. 578-581
-
-
Sturmbauer, C.1
Meyer, A.2
-
76
-
-
0027177635
-
Mitochondrial phylogeny of the endemic mouthbrooding lineages of cichlid fishes from Lake Tanganyika in eastern Africa
-
Sturmbauer C., Meyer A. Mitochondrial phylogeny of the endemic mouthbrooding lineages of cichlid fishes from Lake Tanganyika in eastern Africa. Mol. Biol. Evol. 1993, 10:751-768.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 751-768
-
-
Sturmbauer, C.1
Meyer, A.2
-
77
-
-
0028244885
-
Mitochondrial phylogeny of the Lamprologini, the major substrate spawning lineage of cichlid fishes from Lake-Tanganyika in eastern Africa
-
Sturmbauer C., Verheyen E., Meyer A. Mitochondrial phylogeny of the Lamprologini, the major substrate spawning lineage of cichlid fishes from Lake-Tanganyika in eastern Africa. Mol. Biol. Evol. 1994, 11:691-703.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 691-703
-
-
Sturmbauer, C.1
Verheyen, E.2
Meyer, A.3
-
78
-
-
0028850320
-
Phylogenetic analysis of cichlid fishes using nuclear-DNA markers
-
Sultmann H., Mayer W.E., Figueroa F., Tichy H., Klein J. Phylogenetic analysis of cichlid fishes using nuclear-DNA markers. Mol. Biol. Evol. 1995, 12:1033-1047.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 1033-1047
-
-
Sultmann, H.1
Mayer, W.E.2
Figueroa, F.3
Tichy, H.4
Klein, J.5
-
79
-
-
84901469253
-
-
PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Associates, Sunderland, Massachusetts.
-
Swofford, D.L., 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Associates, Sunderland, Massachusetts.
-
(2002)
-
-
Swofford, D.L.1
-
80
-
-
0024713112
-
Gene genealogy in 3 related populations - consistency probability between gene and population trees
-
Takahata N. Gene genealogy in 3 related populations - consistency probability between gene and population trees. Genetics 1989, 122:957-966.
-
(1989)
Genetics
, vol.122
, pp. 957-966
-
-
Takahata, N.1
-
81
-
-
70349658769
-
Species tree inference by minimizing deep coalescences
-
Than C., Nakhleh L. Species tree inference by minimizing deep coalescences. PLoS Comput. Biol. 2009, 5:e1000501.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Than, C.1
Nakhleh, L.2
-
82
-
-
0030605733
-
Mitochondrial phylogeography of rock-dwelling cichlid fishes reveals evolutionary influence of historical lake level fluctuations of Lake Tanganyika, Africa
-
Verheyen E., Ruber L., Snoeks J., Meyer A. Mitochondrial phylogeography of rock-dwelling cichlid fishes reveals evolutionary influence of historical lake level fluctuations of Lake Tanganyika, Africa. Philos. Trans. R. Soc. Lond. Biol. 1996, 351:797-805.
-
(1996)
Philos. Trans. R. Soc. Lond. Biol.
, vol.351
, pp. 797-805
-
-
Verheyen, E.1
Ruber, L.2
Snoeks, J.3
Meyer, A.4
-
83
-
-
0037432767
-
Origin of the superflock of cichlid fishes from Lake Victoria, East Africa
-
Verheyen E., Salzburger W., Snoeks J., Meyer A. Origin of the superflock of cichlid fishes from Lake Victoria, East Africa. Science 2003, 300:325-329.
-
(2003)
Science
, vol.300
, pp. 325-329
-
-
Verheyen, E.1
Salzburger, W.2
Snoeks, J.3
Meyer, A.4
-
84
-
-
84861373817
-
Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics
-
Weisrock D.W., Smith S.D., Chan L.M., Biebouw K., Kappeler P.M., Yoder A.D. Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics. Mol. Biol. Evol. 2012, 29:1615-1630.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1615-1630
-
-
Weisrock, D.W.1
Smith, S.D.2
Chan, L.M.3
Biebouw, K.4
Kappeler, P.M.5
Yoder, A.D.6
-
85
-
-
33644910732
-
Nuclear gene variation and molecular dating of the cichlid species flock of Lake Malawi
-
Won Y.J., Wang Y., Sivasundar A., Raincrow J., Hey J. Nuclear gene variation and molecular dating of the cichlid species flock of Lake Malawi. Mol. Biol. Evol. 2006, 23:828-837.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 828-837
-
-
Won, Y.J.1
Wang, Y.2
Sivasundar, A.3
Raincrow, J.4
Hey, J.5
-
86
-
-
84857687426
-
Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood
-
Wu Y. Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood. Evolution 2012, 66:763-775.
-
(2012)
Evolution
, vol.66
, pp. 763-775
-
-
Wu, Y.1
-
87
-
-
33750387249
-
Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion
-
Zwickl D.J., Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. 2006, Ph.D. dissertation, The University of Texas at Austin.
-
(2006)
Ph.D. dissertation, The University of Texas at Austin.
-
-
Zwickl, D.J.1
-
88
-
-
0029818927
-
Evolutionary conservation of microsatellite flanking regions and their use in resolving the phylogeny of cichlid fishes (Pisces: Perciformes)
-
Zardoya R., Vollmer D.M., Craddock C., Streelman J.T., Karl S., Meyer A. Evolutionary conservation of microsatellite flanking regions and their use in resolving the phylogeny of cichlid fishes (Pisces: Perciformes). Proc. R. Soc. Lond. B Biol. Sci. 1996, 263:1589-1598.
-
(1996)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.263
, pp. 1589-1598
-
-
Zardoya, R.1
Vollmer, D.M.2
Craddock, C.3
Streelman, J.T.4
Karl, S.5
Meyer, A.6
|