-
1
-
-
80255133159
-
Genome walking in eukaryotes
-
Leoni, C.; Volpicella, M.; de Leo, F.; Gallerani, R.; Ceci, L.R. Genome walking in eukaryotes. FEBS J. 2011, 278, 3953-3977.
-
(2011)
FEBS J.
, vol.278
, pp. 3953-3977
-
-
Leoni, C.1
Volpicella, M.2
de Leo, F.3
Gallerani, R.4
Ceci, L.R.5
-
2
-
-
73349142032
-
Comparison and critical evaluation of pcr-mediated methods to walk along the sequence of genomic DNA
-
Tonooka, Y.; Fujishima, M. Comparison and critical evaluation of pcr-mediated methods to walk along the sequence of genomic DNA. Appl. Microbiol. Biotechnol. 2009, 85, 37-43.
-
(2009)
Appl. Microbiol. Biotechnol.
, vol.85
, pp. 37-43
-
-
Tonooka, Y.1
Fujishima, M.2
-
3
-
-
70350236508
-
Novel genes retrieved from environmental DNA by polymerase chain reaction: Current genome-walking techniques for future metagenome applications
-
Kotik, M. Novel genes retrieved from environmental DNA by polymerase chain reaction: Current genome-walking techniques for future metagenome applications. J. Biotechnol. 2009, 144, 75-82.
-
(2009)
J. Biotechnol.
, vol.144
, pp. 75-82
-
-
Kotik, M.1
-
4
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure, J.; Ji, H. Next-generation DNA sequencing. Nat. Biotechnol. 2008, 26, 1135-1145.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
5
-
-
72849144434
-
Sequencing technologies-The next generation
-
Metzker, M.L. Sequencing technologies-The next generation. Nat. Rev. Genet. 2010, 11, 31-46.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
6
-
-
34547635063
-
HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
-
Wang, G.P.; Ciuffi, A.; Leipzig, J.; Berry, C.C.; Bushman, F.D. HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications. Genome Res. 2007, 17, 1186-1194.
-
(2007)
Genome Res.
, vol.17
, pp. 1186-1194
-
-
Wang, G.P.1
Ciuffi, A.2
Leipzig, J.3
Berry, C.C.4
Bushman, F.D.5
-
7
-
-
70349510646
-
Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for haemophilus genes required in the lung
-
Gawronski, J.D.; Wong, S.M.; Giannoukos, G.; Ward, D.V.; Akerley, B.J. Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for haemophilus genes required in the lung. Proc. Natl. Acad. Sci. USA 2009, 106, 16422-16427.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 16422-16427
-
-
Gawronski, J.D.1
Wong, S.M.2
Giannoukos, G.3
Ward, D.V.4
Akerley, B.J.5
-
8
-
-
79952276542
-
Genome-wide fitness and genetic interactions determined by tn-seq, a high-throughput massively parallel sequencing method for microorganisms
-
doi:10.1002/9780471729259.mc01e03s19
-
Van Opijnen, T.; Camilli, A. Genome-wide fitness and genetic interactions determined by tn-seq, a high-throughput massively parallel sequencing method for microorganisms. Curr. Protoc. Microbiol. 2010, doi:10.1002/9780471729259.mc01e03s19.
-
(2010)
Curr. Protoc. Microbiol.
-
-
Van Opijnen, T.1
Camilli, A.2
-
9
-
-
77955220225
-
Genome-wide high-throughput integrome analyses by nrlam-pcr and next-generation sequencing
-
Paruzynski, A.; Arens, A.; Gabriel, R.; Bartholomae, C.C.; Scholz, S.; Wang, W.; Wolf, S.; Glimm, H.; Schmidt, M.; von Kalle, C. Genome-wide high-throughput integrome analyses by nrlam-pcr and next-generation sequencing. Nat. Protoc. 2010, 5, 1379-1395.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 1379-1395
-
-
Paruzynski, A.1
Arens, A.2
Gabriel, R.3
Bartholomae, C.C.4
Scholz, S.5
Wang, W.6
Wolf, S.7
Glimm, H.8
Schmidt, M.9
von Kalle, C.10
-
10
-
-
84860213490
-
Insertion site pattern: Global approach by linear amplification-mediated PCR and mass sequencing
-
Bartholomae, C.C.; Glimm, H.; von Kalle, C.; Schmidt, M. Insertion site pattern: Global approach by linear amplification-mediated PCR and mass sequencing. Methods Mol. Biol. 2012, 859, 255-265.
-
(2012)
Methods Mol. Biol.
, vol.859
, pp. 255-265
-
-
Bartholomae, C.C.1
Glimm, H.2
von Kalle, C.3
Schmidt, M.4
-
11
-
-
79960597679
-
An integrated semiconductor device enabling non-optical genome sequencing
-
Rothberg, J.M.; Hinz, W.; Rearick, T.M.; Schultz, J.; Mileski, W.; Davey, M.; Leamon, J.H.; Johnson, K.; Milgrew, M.J.; Edwards, M.; et al. An integrated semiconductor device enabling non-optical genome sequencing. Nature 2011, 475, 348-352.
-
(2011)
Nature
, vol.475
, pp. 348-352
-
-
Rothberg, J.M.1
Hinz, W.2
Rearick, T.M.3
Schultz, J.4
Mileski, W.5
Davey, M.6
Leamon, J.H.7
Johnson, K.8
Milgrew, M.J.9
Edwards, M.10
-
12
-
-
44849126727
-
Generation of a 3D indexed petunia insertion database for reverse genetics
-
Vandenbussche, M.; Janssen, A.; Zethof, J.; van Orsouw, N.; Peters, J.; van Eijk, M.J.; Rijpkema, A.S.; Schneiders, H.; Santhanam, P.; de Been, M.; et al. Generation of a 3D indexed petunia insertion database for reverse genetics. Plant J. 2008, 54, 1105-1114.
-
(2008)
Plant J.
, vol.54
, pp. 1105-1114
-
-
Vandenbussche, M.1
Janssen, A.2
Zethof, J.3
van Orsouw, N.4
Peters, J.5
van Eijk, M.J.6
Rijpkema, A.S.7
Schneiders, H.8
Santhanam, P.9
de Been, M.10
-
13
-
-
44349158394
-
DNA bar coding and pyrosequencing to analyze adverse events in therapeutic gene transfer
-
Wang, G.P.; Garrigue, A.; Ciuffi, A.; Ronen, K.; Leipzig, J.; Berry, C.; Lagresle-Peyrou, C.; Benjelloun, F.; Hacein-Bey-Abina, S.; Fischer, A.; et al. DNA bar coding and pyrosequencing to analyze adverse events in therapeutic gene transfer. Nucleic Acids Res. 2008, 36, e49.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Wang, G.P.1
Garrigue, A.2
Ciuffi, A.3
Ronen, K.4
Leipzig, J.5
Berry, C.6
Lagresle-Peyrou, C.7
Benjelloun, F.8
Hacein-Bey-Abina, S.9
Fischer, A.10
-
14
-
-
71549150301
-
Dla-based strategies for cloning insertion mutants: Cloning the gl4 locus of maize using mu transposon tagged alleles
-
Liu, S.; Dietrich, C.R.; Schnable, P.S. Dla-based strategies for cloning insertion mutants: Cloning the gl4 locus of maize using mu transposon tagged alleles. Genetics 2009, 183, 1215-1225.
-
(2009)
Genetics
, vol.183
, pp. 1215-1225
-
-
Liu, S.1
Dietrich, C.R.2
Schnable, P.S.3
-
15
-
-
73649095856
-
Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome
-
Liu, S.; Yeh, C.T.; Ji, T.; Ying, K.; Wu, H.; Tang, H.M.; Fu, Y.; Nettleton, D.; Schnable, P.S. Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome. PLoS Genet. 2009, 5, e1000733.
-
(2009)
PLoS Genet.
, vol.5
-
-
Liu, S.1
Yeh, C.T.2
Ji, T.3
Ying, K.4
Wu, H.5
Tang, H.M.6
Fu, Y.7
Nettleton, D.8
Schnable, P.S.9
-
16
-
-
75649099781
-
High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in schizosaccharomyces pombe
-
Guo, Y.; Levin, H.L. High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in schizosaccharomyces pombe. Genome Res. 2010, 20, 239-248.
-
(2010)
Genome Res.
, vol.20
, pp. 239-248
-
-
Guo, Y.1
Levin, H.L.2
-
17
-
-
0024431684
-
In vivo footprinting of a muscle specific enhancer by ligation mediated pcr
-
Mueller, P.R.; Wold, B. In vivo footprinting of a muscle specific enhancer by ligation mediated pcr. Science 1989, 246, 780-786.
-
(1989)
Science
, vol.246
, pp. 780-786
-
-
Mueller, P.R.1
Wold, B.2
-
18
-
-
0024462602
-
Genomic sequencing and methylation analysis by ligation mediated pcr
-
Pfeifer, G.P.; Steigerwald, S.D.; Mueller, P.R.; Wold, B.; Riggs, A.D. Genomic sequencing and methylation analysis by ligation mediated pcr. Science 1989, 246, 810-813.
-
(1989)
Science
, vol.246
, pp. 810-813
-
-
Pfeifer, G.P.1
Steigerwald, S.D.2
Mueller, P.R.3
Wold, B.4
Riggs, A.D.5
-
19
-
-
0037108189
-
Polyclonal long-term repopulating stem cell clones in a primate model
-
Schmidt, M.; Zickler, P.; Hoffmann, G.; Haas, S.; Wissler, M.; Muessig, A.; Tisdale, J.F.; Kuramoto, K.; Andrews, R.G.; Wu, T.; et al. Polyclonal long-term repopulating stem cell clones in a primate model. Blood 2002, 100, 2737-2743.
-
(2002)
Blood
, vol.100
, pp. 2737-2743
-
-
Schmidt, M.1
Zickler, P.2
Hoffmann, G.3
Haas, S.4
Wissler, M.5
Muessig, A.6
Tisdale, J.F.7
Kuramoto, K.8
Andrews, R.G.9
Wu, T.10
-
20
-
-
73249130761
-
Simultaneous assay of every salmonella typhi gene using one million transposon mutants
-
Langridge, G.C.; Phan, M.D.; Turner, D.J.; Perkins, T.T.; Parts, L.; Haase, J.; Charles, I.; Maskell, D.J.; Peters, S.E.; Dougan, G.; et al. Simultaneous assay of every salmonella typhi gene using one million transposon mutants. Genome Res. 2009, 19, 2308-2316.
-
(2009)
Genome Res.
, vol.19
, pp. 2308-2316
-
-
Langridge, G.C.1
Phan, M.D.2
Turner, D.J.3
Perkins, T.T.4
Parts, L.5
Haase, J.6
Charles, I.7
Maskell, D.J.8
Peters, S.E.9
Dougan, G.10
-
21
-
-
79953680184
-
A piggybac transposon-based mutagenesis system for the fission yeast schizosaccharomyces pombe
-
Li, J.; Zhang, J.M.; Li, X.; Suo, F.; Zhang, M.J.; Hou, W.; Han, J.; Du, L.L. A piggybac transposon-based mutagenesis system for the fission yeast schizosaccharomyces pombe. Nucleic Acids Res. 2011, 39, e40.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Li, J.1
Zhang, J.M.2
Li, X.3
Suo, F.4
Zhang, M.J.5
Hou, W.6
Han, J.7
Du, L.L.8
-
22
-
-
77954251724
-
Use of illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy mutator lines of maize
-
Williams-Carrier, R.; Stiffler, N.; Belcher, S.; Kroeger, T.; Stern, D.B.; Monde, R.A.; Coalter, R.; Barkan, A. Use of illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy mutator lines of maize. Plant J. 2010, 63, 167-177.
-
(2010)
Plant J.
, vol.63
, pp. 167-177
-
-
Williams-Carrier, R.1
Stiffler, N.2
Belcher, S.3
Kroeger, T.4
Stern, D.B.5
Monde, R.A.6
Coalter, R.7
Barkan, A.8
-
23
-
-
84856728402
-
Genome-wide lore1 retrotransposon mutagenesis and high-throughput insertion detection in lotus japonicus
-
Urbanski, D.F.; Malolepszy, A.; Stougaard, J.; Andersen, S.U. Genome-wide lore1 retrotransposon mutagenesis and high-throughput insertion detection in lotus japonicus. Plant J. 2012, 69, 731-741.
-
(2012)
Plant J.
, vol.69
, pp. 731-741
-
-
Urbanski, D.F.1
Malolepszy, A.2
Stougaard, J.3
Andersen, S.U.4
-
24
-
-
70349611730
-
Tn-seq: High-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
-
Van Opijnen, T.; Bodi, K.L.; Camilli, A. Tn-seq: High-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms. Nat. Methods 2009, 6, 767-772.
-
(2009)
Nat. Methods
, vol.6
, pp. 767-772
-
-
Van Opijnen, T.1
Bodi, K.L.2
Camilli, A.3
-
25
-
-
69949123813
-
Identifying genetic determinants needed to establish a human gut symbiont in its habitat
-
Goodman, A.L.; McNulty, N.P.; Zhao, Y.; Leip, D.; Mitra, R.D.; Lozupone, C.A.; Knight, R.; Gordon, J.I. Identifying genetic determinants needed to establish a human gut symbiont in its habitat. Cell Host Microbe 2009, 6, 279-289.
-
(2009)
Cell Host Microbe
, vol.6
, pp. 279-289
-
-
Goodman, A.L.1
McNulty, N.P.2
Zhao, Y.3
Leip, D.4
Mitra, R.D.5
Lozupone, C.A.6
Knight, R.7
Gordon, J.I.8
-
26
-
-
80052765869
-
Novel molecular and computational methods improve the accuracy of insertion site analysis in sleeping beauty-induced tumors
-
Brett, B.T.; Berquam-Vrieze, K.E.; Nannapaneni, K.; Huang, J.; Scheetz, T.E.; Dupuy, A.J. Novel molecular and computational methods improve the accuracy of insertion site analysis in sleeping beauty-induced tumors. PLoS One 2011, 6, e24668.
-
(2011)
PLoS One
, vol.6
-
-
Brett, B.T.1
Berquam-Vrieze, K.E.2
Nannapaneni, K.3
Huang, J.4
Scheetz, T.E.5
Dupuy, A.J.6
-
27
-
-
79955079817
-
Genome-scale identification of resistance functions in pseudomonas aeruginosa using tn-seq
-
e00315-10
-
Gallagher, L.A.; Shendure, J.; Manoil, C. Genome-scale identification of resistance functions in pseudomonas aeruginosa using tn-seq. MBio 2011, 2, e00315-10.
-
(2011)
MBio
, vol.2
-
-
Gallagher, L.A.1
Shendure, J.2
Manoil, C.3
-
28
-
-
0023787609
-
A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences
-
Triglia, T.; Peterson, M.G.; Kemp, D.J. A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences. Nucleic Acids Res. 1988, 16, 8186.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 8186
-
-
Triglia, T.1
Peterson, M.G.2
Kemp, D.J.3
-
29
-
-
77954551785
-
Semi-automated library preparation for high-throughput DNA sequencing platforms
-
Farias-Hesson, E.; Erikson, J.; Atkins, A.; Shen, P.; Davis, R.W.; Scharfe, C.; Pourmand, N. Semi-automated library preparation for high-throughput DNA sequencing platforms. J. Biomed. Biotechnol. 2010, 2010, 617469.
-
(2010)
J. Biomed. Biotechnol.
, pp. 617469
-
-
Farias-Hesson, E.1
Erikson, J.2
Atkins, A.3
Shen, P.4
Davis, R.W.5
Scharfe, C.6
Pourmand, N.7
-
30
-
-
84901320783
-
-
Available online: (accessed on 1 August 2012)
-
SOLiDTM System Barcoding. Available online: http://www3.appliedbiosystems.com/cms/groups/ mcb_marketing/documents/generaldocuments/cms_057554.pdf (accessed on 1 August 2012).
-
SOLiDTM System Barcoding.
-
-
-
31
-
-
80955152021
-
Multiplexed array-based and in-solution genomic enrichment for flexible and cost-effective targeted next-generation sequencing
-
Harakalova, M.; Mokry, M.; Hrdlickova, B.; Renkens, I.; Duran, K.; van Roekel, H.; Lansu, N.; van Roosmalen, M.; de Bruijn, E.; Nijman, I.J.; et al. Multiplexed array-based and in-solution genomic enrichment for flexible and cost-effective targeted next-generation sequencing. Nat. Protoc. 2011, 6, 1870-1886.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1870-1886
-
-
Harakalova, M.1
Mokry, M.2
Hrdlickova, B.3
Renkens, I.4
Duran, K.5
van Roekel, H.6
Lansu, N.7
van Roosmalen, M.8
de Bruijn, E.9
Nijman, I.J.10
-
32
-
-
84862788803
-
Identification of genetic risk variants for deep vein thrombosis by multiplexed next-generation sequencing of 186 hemostatic/pro-inflammatory genes
-
Lotta, L.A.; Wang, M.; Yu, J.; Martinelli, I.; Yu, F.; Passamonti, S.M.; Consonni, D.; Pappalardo, E.; Menegatti, M.; Scherer, S.E.; et al. Identification of genetic risk variants for deep vein thrombosis by multiplexed next-generation sequencing of 186 hemostatic/pro-inflammatory genes. BMC Med. Genomics 2012, 5, 7.
-
(2012)
BMC Med. Genomics
, vol.5
, pp. 7
-
-
Lotta, L.A.1
Wang, M.2
Yu, J.3
Martinelli, I.4
Yu, F.5
Passamonti, S.M.6
Consonni, D.7
Pappalardo, E.8
Menegatti, M.9
Scherer, S.E.10
-
33
-
-
79960556069
-
Genomic DNA pooling strategy for next-generation sequencing-based rare variant discovery in abdominal aortic aneurysm regions of interest-challenges and limitations
-
Harakalova, M.; Nijman, I.J.; Medic, J.; Mokry, M.; Renkens, I.; Blankensteijn, J.D.; Kloosterman, W.; Baas, A.F.; Cuppen, E. Genomic DNA pooling strategy for next-generation sequencing-based rare variant discovery in abdominal aortic aneurysm regions of interest-challenges and limitations. J. Cardiovasc. Transl. Res. 2011, 4, 271-280.
-
(2011)
J. Cardiovasc. Transl. Res.
, vol.4
, pp. 271-280
-
-
Harakalova, M.1
Nijman, I.J.2
Medic, J.3
Mokry, M.4
Renkens, I.5
Blankensteijn, J.D.6
Kloosterman, W.7
Baas, A.F.8
Cuppen, E.9
-
34
-
-
84856103017
-
Pair-barcode high-throughput sequencing for large-scale multiplexed sample analysis
-
Tu, J.; Ge, Q.; Wang, S.; Wang, L.; Sun, B.; Yang, Q.; Bai, Y.; Lu, Z. Pair-barcode high-throughput sequencing for large-scale multiplexed sample analysis. BMC Genomics 2012, 13, 43.
-
(2012)
BMC Genomics
, vol.13
, pp. 43
-
-
Tu, J.1
Ge, Q.2
Wang, S.3
Wang, L.4
Sun, B.5
Yang, Q.6
Bai, Y.7
Lu, Z.8
-
36
-
-
84864920004
-
Comparison of next-generation sequencing systems
-
Liu, L.; Li, Y.; Li, S.; Hu, N.; He, Y.; Pong, R.; Lin, D.; Lu, L.; Law, M. Comparison of next-generation sequencing systems. J. Biomed. Biotechnol. 2012, 2012, 251364.
-
(2012)
J. Biomed. Biotechnol.
, pp. 251364
-
-
Liu, L.1
Li, Y.2
Li, S.3
Hu, N.4
He, Y.5
Pong, R.6
Lin, D.7
Lu, L.8
Law, M.9
-
37
-
-
38949168786
-
Anchored pcr for possible detection and characterisation of foreign integrated DNA at near single molecule level
-
Nielsen, C.R.; Berdal, K.G.; Holst-Jensen, A. Anchored pcr for possible detection and characterisation of foreign integrated DNA at near single molecule level. Eur. Food Res. Technol. 2008, 226, 949-956.
-
(2008)
Eur. Food Res. Technol.
, vol.226
, pp. 949-956
-
-
Nielsen, C.R.1
Berdal, K.G.2
Holst-Jensen, A.3
|