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Volumn 80, Issue 12, 2014, Pages 3604-3614

Transcription of two adjacent carbohydrate utilization gene clusters in Bifidobacterium breve UCC2003 is controlled by LacI- and repressor open reading frame kinase (ROK)- type regulators

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATES; DNA SEQUENCES; GENES; METABOLISM; PHYSIOLOGY; PROTEINS;

EID: 84901362784     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00130-14     Document Type: Article
Times cited : (28)

References (62)
  • 1
    • 0031790825 scopus 로고    scopus 로고
    • Phylogenetic analysis of the genus Bifidobacterium and related genera based on 16S rDNA sequences
    • Miyake T, Watanabe K, Watanabe T, Oyaizu H. 1998. Phylogenetic analysis of the genus Bifidobacterium and related genera based on 16S rDNA sequences. Microbiol. Immunol. 42:661-667.
    • (1998) Microbiol. Immunol. , vol.42 , pp. 661-667
    • Miyake, T.1    Watanabe, K.2    Watanabe, T.3    Oyaizu, H.4
  • 4
    • 0000212926 scopus 로고
    • The treatment of intestinal infections by the method of transformation of the bacterial intestinal flora
    • Tissier H. 1906. The treatment of intestinal infections by the method of transformation of the bacterial intestinal flora. C. R. Soc. Biol. 60:359-361.
    • (1906) C. R. Soc. Biol. , vol.60 , pp. 359-361
    • Tissier, H.1
  • 5
    • 84863698639 scopus 로고    scopus 로고
    • The comparition of the efficacy of two different probiotics in rotavirus gastroenteritis in children
    • Erdogan O, Tanyeri B, Torun E, Gonullu E, Arslan H, Erenberk U, Oktem F. 2012. The comparition of the efficacy of two different probiotics in rotavirus gastroenteritis in children. J. Trop. Med. 2012:787240. http: //dx.doi.org/10.1155/2012/787240.
    • (2012) J. Trop. Med. , vol.2012 , pp. 787240
    • Erdogan, O.1    Tanyeri, B.2    Torun, E.3    Gonullu, E.4    Arslan, H.5    Erenberk, U.6    Oktem, F.7
  • 7
    • 84868254408 scopus 로고    scopus 로고
    • Fecal microbiota transplantation in relapsing Clostridium difficile infection
    • Rohlke F, Stollman N. 2012. Fecal microbiota transplantation in relapsing Clostridium difficile infection. Therap. Adv. Gastroenterol. 5:403-420. http://dx.doi.org/10.1177/1756283X12453637.
    • (2012) Therap. Adv. Gastroenterol. , vol.5 , pp. 403-420
    • Rohlke, F.1    Stollman, N.2
  • 8
    • 84878699293 scopus 로고    scopus 로고
    • The role of gut microbiota in the pathogenesis of colorectal cancer
    • Zhu Q, Gao R, Wu W, Qin H. 2013. The role of gut microbiota in the pathogenesis of colorectal cancer. Tumour Biol. 34:1285-1300. http://dx .doi.org/10.1007/s13277-013-0684-4.
    • (2013) Tumour Biol. , vol.34 , pp. 1285-1300
    • Zhu, Q.1    Gao, R.2    Wu, W.3    Qin, H.4
  • 9
    • 80054736926 scopus 로고    scopus 로고
    • Systematic review of intestinal microbiota transplantation (fecal bacteriotherapy) for recurrent Clostridium difficile infection
    • Gough E, Shaikh H, Manges AR. 2011. Systematic review of intestinal microbiota transplantation (fecal bacteriotherapy) for recurrent Clostridium difficile infection. Clin. Infect. Dis. 53:994-1002. http://dx.doi.org/10 .1093/cid/cir632.
    • (2011) Clin. Infect. Dis. , vol.53 , pp. 994-1002
    • Gough, E.1    Shaikh, H.2    Manges, A.R.3
  • 10
    • 0029013322 scopus 로고
    • Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics
    • Gibson GR, Roberfroid MB. 1995. Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics. J. Nutr. 125: 1401-1412.
    • (1995) J. Nutr. , vol.125 , pp. 1401-1412
    • Gibson, G.R.1    Roberfroid, M.B.2
  • 11
    • 37349031400 scopus 로고    scopus 로고
    • Whole-grain wheat breakfast cereal has a prebiotic effect on the human gut microbiota: a double-blind, placebocontrolled, crossover study
    • Costabile A, Klinder A, Fava F, Napolitano A, Fogliano V, Leonard C, Gibson GR, Tuohy KM. 2008. Whole-grain wheat breakfast cereal has a prebiotic effect on the human gut microbiota: a double-blind, placebocontrolled, crossover study. Br. J. Nutr. 99:110-120. http://dx.doi.org/10 .1017/S0007114507793923.
    • (2008) Br. J. Nutr. , vol.99 , pp. 110-120
    • Costabile, A.1    Klinder, A.2    Fava, F.3    Napolitano, A.4    Fogliano, V.5    Leonard, C.6    Gibson, G.R.7    Tuohy, K.M.8
  • 13
    • 38349181488 scopus 로고    scopus 로고
    • Bacterial metabolism and healthrelated effects of galacto-oligosaccharidesandother prebiotics
    • Macfarlane GT, Steed H, Macfarlane S. 2008. Bacterial metabolism and healthrelated effects of galacto-oligosaccharidesandother prebiotics. J. Appl. Microbiol. 104:305-344. http://dx.doi.org/10.1111/j.1365-2672.2007.03520.x.
    • (2008) J. Appl. Microbiol. , vol.104 , pp. 305-344
    • Macfarlane, G.T.1    Steed, H.2    Macfarlane, S.3
  • 14
    • 1842580496 scopus 로고    scopus 로고
    • Lactulose ingestion increases faecal bifidobacterial counts: a randomised double-blind study in healthy humans
    • Bouhnik Y, Attar A, Joly FA, Riottot M, Dyard F, Flourie B. 2004. Lactulose ingestion increases faecal bifidobacterial counts: a randomised double-blind study in healthy humans. Eur. J. Clin. Nutr. 58:462-466. http://dx.doi.org/10.1038/sj.ejcn.1601829.
    • (2004) Eur. J. Clin. Nutr. , vol.58 , pp. 462-466
    • Bouhnik, Y.1    Attar, A.2    Joly, F.A.3    Riottot, M.4    Dyard, F.5    Flourie, B.6
  • 16
    • 0001944767 scopus 로고
    • The fructose-6-phosphate shunt as a peculiar pattern of hexose degradation in the genus Bifidobacterium
    • Scardovi V, Trovatelli ID. 1965. The fructose-6-phosphate shunt as a peculiar pattern of hexose degradation in the genus Bifidobacterium. Ann. Microbiol. 15:19-29.
    • (1965) Ann. Microbiol. , vol.15 , pp. 19-29
    • Scardovi, V.1    Trovatelli, I.D.2
  • 19
    • 33846457022 scopus 로고    scopus 로고
    • Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003
    • Maze A, O'Connell-Motherway M, Fitzgerald GF, Deutscher J, van Sinderen D. 2007. Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003. Appl. Environ. Microbiol. 73:545-553. http://dx.doi.org/10.1128/AEM.01496-06.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 545-553
    • Maze, A.1    O'Connell-Motherway, M.2    Fitzgerald, G.F.3    Deutscher, J.4    van Sinderen, D.5
  • 21
    • 22144456095 scopus 로고    scopus 로고
    • Transcriptional regulation and characterization of a novel β-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003
    • Ryan SM, Fitzgerald GF, van Sinderen D. 2005. Transcriptional regulation and characterization of a novel β-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003. Appl. Environ. Microbiol. 71: 3475-3482. http://dx.doi.org/10.1128/AEM.71.7.3475-3482.2005.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3475-3482
    • Ryan, S.M.1    Fitzgerald, G.F.2    van Sinderen, D.3
  • 22
    • 79955367571 scopus 로고    scopus 로고
    • Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003
    • O'Connell Motherway M, Fitzgerald GF, van Sinderen D. 2011. Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003. Microb. Biotechnol. 4:403-416. http://dx.doi.org /10.1111/j.1751-7915.2010.00218.x.
    • (2011) Microb. Biotechnol. , vol.4 , pp. 403-416
    • O'Connell Motherway, M.1    Fitzgerald, G.F.2    van Sinderen, D.3
  • 24
    • 0037329109 scopus 로고    scopus 로고
    • Parallel evolution of ligand specificity between LacI/GalR family repressors and periplasmic sugar-binding proteins
    • Fukami-Kobayashi K, Tateno Y, Nishikawa K. 2003. Parallel evolution of ligand specificity between LacI/GalR family repressors and periplasmic sugar-binding proteins. Mol. Biol. Evol. 20:267-277. http://dx.doi.org/10 .1093/molbev/msg038.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 267-277
    • Fukami-Kobayashi, K.1    Tateno, Y.2    Nishikawa, K.3
  • 25
    • 0026724966 scopus 로고
    • A family of bacterial regulators homologous to Gal and Lac repressors
    • Weickert MJ, Adhya S. 1992. A family of bacterial regulators homologous to Gal and Lac repressors. J. Biol. Chem. 267:15869-15874.
    • (1992) J. Biol. Chem. , vol.267 , pp. 15869-15874
    • Weickert, M.J.1    Adhya, S.2
  • 26
    • 32444445831 scopus 로고    scopus 로고
    • Lactose-over-glucose preference in Bifidobacterium longum NCC2705: glcP, encoding a glucose transporter, is subject to lactose repression
    • Parche S, Beleut M, Rezzonico E, Jacobs D, Arigoni F, Titgemeyer F, Jankovic I. 2006. Lactose-over-glucose preference in Bifidobacterium longum NCC2705: glcP, encoding a glucose transporter, is subject to lactose repression. J. Bacteriol. 188:1260-1265. http://dx.doi.org/10.1128/JB .188.4.1260-1265.2006.
    • (2006) J. Bacteriol. , vol.188 , pp. 1260-1265
    • Parche, S.1    Beleut, M.2    Rezzonico, E.3    Jacobs, D.4    Arigoni, F.5    Titgemeyer, F.6    Jankovic, I.7
  • 27
    • 0000633291 scopus 로고
    • The origin of melezitose: a biochemical relationship between the lime tree (Tilia spp.) and an aphis (Eucallipterus tiliae L.)
    • Bacon JS, Dickinson B. 1957. The origin of melezitose: a biochemical relationship between the lime tree (Tilia spp.) and an aphis (Eucallipterus tiliae L.). Biochem. J. 66:289-297.
    • (1957) Biochem. J. , vol.66 , pp. 289-297
    • Bacon, J.S.1    Dickinson, B.2
  • 28
    • 0007299041 scopus 로고
    • Melezitose and turanose
    • Pigman MLW, Stanley P (ed), Academic Press, San Diego, CA.
    • Hudson CS. 1946. Melezitose and turanose, p 1-36. In Pigman MLW, Stanley P (ed), Advances in carbohydrate chemistry, vol 2. Academic Press, San Diego, CA.
    • (1946) Advances in carbohydrate chemistry, , vol.2 , pp. 1-36
    • Hudson, C.S.1
  • 30
    • 0016686551 scopus 로고
    • Improved medium for lactic streptococci and their bacteriophages
    • Terzaghi BE, Sandine WE. 1975. Improved medium for lactic streptococci and their bacteriophages. Appl. Microbiol. 29:807-813.
    • (1975) Appl. Microbiol. , vol.29 , pp. 807-813
    • Terzaghi, B.E.1    Sandine, W.E.2
  • 37
  • 38
    • 80055082271 scopus 로고    scopus 로고
    • Accelerated profile HMM searches
    • Eddy SR. 2011. Accelerated profile HMM searches. PLoS Comput. Biol. 7:e1002195. http://dx.doi.org/10.1371/journal.pcbi.1002195.
    • (2011) PLoS Comput. Biol. , vol.7
    • Eddy, S.R.1
  • 39
    • 0032934709 scopus 로고    scopus 로고
    • Molecular characterisation of a 5.75-kb cryptic plasmid from Bifidobacterium breve NCFB 2258 and determination of mode of replication
    • O'Riordan K, Fitzgerald GF. 1999. Molecular characterisation of a 5.75-kb cryptic plasmid from Bifidobacterium breve NCFB 2258 and determination of mode of replication. FEMS Microbiol. Lett. 174:285-294.
    • (1999) FEMS Microbiol. Lett. , vol.174 , pp. 285-294
    • O'Riordan, K.1    Fitzgerald, G.F.2
  • 40
    • 77953570033 scopus 로고    scopus 로고
    • Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003
    • O'Connell Motherway M, O'Driscoll J, Fitzgerald GF, Van Sinderen D. 2009. Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003. Microb. Biotechnol. 2:321-332. http://dx.doi.org/10.1111/j.1751-7915.2008.00071.x.
    • (2009) Microb. Biotechnol. , vol.2 , pp. 321-332
    • O'Connell Motherway, M.1    O'Driscoll, J.2    Fitzgerald, G.F.3    Van Sinderen, D.4
  • 41
    • 0027230871 scopus 로고
    • Improved cloning vectors and transformation procedure for Lactococcus lactis
    • Wells JM, Wilson PW, Le Page RW. 1993. Improved cloning vectors and transformation procedure for Lactococcus lactis. J. Appl. Bacteriol. 74: 629-636.
    • (1993) J. Appl. Bacteriol. , vol.74 , pp. 629-636
    • Wells, J.M.1    Wilson, P.W.2    Le Page, R.W.3
  • 42
    • 26844475027 scopus 로고    scopus 로고
    • Industrial-scale production and purification of a heterologous protein in Lactococcus lactis using the nisin-controlled gene expression system NICE: the case of lysostaphin
    • Mierau I, Leij P, van Swam I, Blommestein B, Floris E, Mond J, Smid E. 2005. Industrial-scale production and purification of a heterologous protein in Lactococcus lactis using the nisin-controlled gene expression system NICE: the case of lysostaphin. Microb. Cell Fact. 4:15. http://dx.doi .org/10.1186/1475-2859-4-15.
    • (2005) Microb. Cell Fact. , vol.4 , pp. 15
    • Mierau, I.1    Leij, P.2    van Swam, I.3    Blommestein, B.4    Floris, E.5    Mond, J.6    Smid, E.7
  • 43
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 44
    • 0028882594 scopus 로고
    • A system to generate chromosomal mutations in Lactococcus lactis which allows fast analysis of targeted genes
    • Law J, Buist G, Haandrikman A, Kok J, Venema G, Leenhouts K. 1995. A system to generate chromosomal mutations in Lactococcus lactis which allows fast analysis of targeted genes. J. Bacteriol. 177:7011-7018.
    • (1995) J. Bacteriol. , vol.177 , pp. 7011-7018
    • Law, J.1    Buist, G.2    Haandrikman, A.3    Kok, J.4    Venema, G.5    Leenhouts, K.6
  • 46
    • 70350455898 scopus 로고    scopus 로고
    • An interactive regulatory network controls stress response in Bifidobacterium breve UCC2003
    • Zomer A, Fernandez M, Kearney B, Fitzgerald GF, Ventura M, van Sinderen D. 2009. An interactive regulatory network controls stress response in Bifidobacterium breve UCC2003. J. Bacteriol. 191:7039-7049. http://dx.doi.org/10.1128/JB.00897-09.
    • (2009) J. Bacteriol. , vol.191 , pp. 7039-7049
    • Zomer, A.1    Fernandez, M.2    Kearney, B.3    Fitzgerald, G.F.4    Ventura, M.5    van Sinderen, D.6
  • 50
    • 0035827588 scopus 로고    scopus 로고
    • Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12.
    • Long AD, Mangalam HJ, Chan BY, Tolleri L, Hatfield GW, Baldi P. 2001. Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. J. Biol. Chem. 276:19937-19944. http://dx.doi.org/10.1074/jbc.M010192200.
    • (2001) J. Biol. Chem. , vol.276 , pp. 19937-19944
    • Long, A.D.1    Mangalam, H.J.2    Chan, B.Y.3    Tolleri, L.4    Hatfield, G.W.5    Baldi, P.6
  • 51
    • 34548169696 scopus 로고    scopus 로고
    • Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions
    • Hellman LM, Fried MG. 2007. Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions. Nat. Protoc. 2:1849-1861. http://dx.doi.org/10.1038/nprot.2007.249.
    • (2007) Nat. Protoc. , vol.2 , pp. 1849-1861
    • Hellman, L.M.1    Fried, M.G.2
  • 52
    • 0027162304 scopus 로고
    • Characterization of the nisin gene cluster nisABTCIPR of Lactococcus lactis. Requirement of expression of the nisA and nisI genes for development of immunity.
    • Kuipers OP, Beerthuyzen MM, Siezen RJ, de Vos WM. 1993. Characterization of the nisin gene cluster nisABTCIPR of Lactococcus lactis. Requirement of expression of the nisA and nisI genes for development of immunity. Eur. J. Biochem. 216:281-291.
    • (1993) Eur. J. Biochem. , vol.216 , pp. 281-291
    • Kuipers, O.P.1    Beerthuyzen, M.M.2    Siezen, R.J.3    de Vos, W.M.4
  • 53
    • 12244311206 scopus 로고    scopus 로고
    • Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing
    • Ventura M, Zink R, Fitzgerald GF, van Sinderen D. 2005. Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing. Appl. Environ. Microbiol. 71:487-500. http://dx.doi.org/10.1128/AEM .71.1.487-500.2005.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 487-500
    • Ventura, M.1    Zink, R.2    Fitzgerald, G.F.3    van Sinderen, D.4
  • 54
    • 0028000790 scopus 로고
    • Evolutionary relationships between sugar kinases and transcriptional repressors in bacteria
    • Titgemeyer F, Reizer J, Reizer A, Saier MH. 1994. Evolutionary relationships between sugar kinases and transcriptional repressors in bacteria. Microbiology 140:2349-2354.
    • (1994) Microbiology , vol.140 , pp. 2349-2354
    • Titgemeyer, F.1    Reizer, J.2    Reizer, A.3    Saier, M.H.4
  • 56
    • 33846516797 scopus 로고    scopus 로고
    • The lactose repressor system: paradigms for regulation, allosteric behavior and protein folding
    • Wilson CJ, Zhan H, Swint-Kruse L, Matthews KS. 2007. The lactose repressor system: paradigms for regulation, allosteric behavior and protein folding. Cell. Mol. Life Sci. 64:3-16. http://dx.doi.org/10.1007/s00018 -006-6296-z.
    • (2007) Cell. Mol. Life Sci. , vol.64 , pp. 3-16
    • Wilson, C.J.1    Zhan, H.2    Swint-Kruse, L.3    Matthews, K.S.4
  • 57
    • 63749116038 scopus 로고    scopus 로고
    • Allostery in the LacI/GalR family: variations on a theme
    • Swint-Kruse L, Matthews KS. 2009. Allostery in the LacI/GalR family: variations on a theme. Curr. Opin. Microbiol. 12:129-137. http://dx.doi .org/10.1016/j.mib.2009.01.009.
    • (2009) Curr. Opin. Microbiol. , vol.12 , pp. 129-137
    • Swint-Kruse, L.1    Matthews, K.S.2
  • 58
    • 42449147860 scopus 로고    scopus 로고
    • A generic approach to identify transcription factor-specific operator motifs; inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1
    • Francke C, Kerkhoven R, Wels M, Siezen RJ. 2008. A generic approach to identify transcription factor-specific operator motifs; inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1.BMC Genomics 9:145. http://dx.doi.org/10.1186/1471-2164-9-145.
    • (2008) BMC Genomics , vol.9 , pp. 145
    • Francke, C.1    Kerkhoven, R.2    Wels, M.3    Siezen, R.J.4
  • 59
    • 0035004025 scopus 로고    scopus 로고
    • Regulation of PTS gene expression by the homologous transcriptional regulators, Mlc and NagC, in Escherichia coli (or how two similar repressors can behave differently)
    • Plumbridge J. 2001. Regulation of PTS gene expression by the homologous transcriptional regulators, Mlc and NagC, in Escherichia coli (or how two similar repressors can behave differently). J. Mol. Microbiol. Biotechnol. 3:371-380.
    • (2001) J. Mol. Microbiol. Biotechnol. , vol.3 , pp. 371-380
    • Plumbridge, J.1
  • 60
    • 0023463012 scopus 로고
    • Mutants of the catabolite activator protein of Escherichia coli that are specifically deficient in the gene-activation function
    • Irwin N, Ptashne M. 1987. Mutants of the catabolite activator protein of Escherichia coli that are specifically deficient in the gene-activation function. Proc. Natl. Acad. Sci. U. S. A. 84:8315-8319.
    • (1987) Proc. Natl. Acad. Sci. U. S. A. , vol.84 , pp. 8315-8319
    • Irwin, N.1    Ptashne, M.2
  • 61
    • 55949122273 scopus 로고    scopus 로고
    • The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules
    • Ruckert C, Milse J, Albersmeier A, Koch D, Puhler A, Kalinowski J. 2008. The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules. BMC Genomics 9:483. http://dx.doi.org/10.1186/1471-2164-9-483.
    • (2008) BMC Genomics , vol.9 , pp. 483
    • Ruckert, C.1    Milse, J.2    Albersmeier, A.3    Koch, D.4    Puhler, A.5    Kalinowski, J.6


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