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Volumn 31, Issue , 2013, Pages 112-146

Disentangling the Trichoderma viridescens complex

Author keywords

Acl1; Hypocrea; Hypocreaceae; Phylogenetic analysis; Rpb2; Systematic; Tef1

Indexed keywords


EID: 84901353235     PISSN: 00315850     EISSN: None     Source Type: Journal    
DOI: 10.3767/003158513X672234     Document Type: Article
Times cited : (46)

References (44)
  • 1
    • 0036019718 scopus 로고    scopus 로고
    • A phylogeny of the megapodes (Aves: Mega-podiidae) based on nuclear and mitochondrial DNA sequences
    • Birksa SM, Edwards SV. 2002. A phylogeny of the megapodes (Aves: Mega-podiidae) based on nuclear and mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 23: 408-421.
    • (2002) Molecular Phylogenetics and Evolution , vol.23 , pp. 408-421
    • Birksa, S.M.1    Edwards, S.V.2
  • 2
    • 0000384780 scopus 로고
    • A revision of the genus Trichoderma. II. Infrageneric classification
    • Bissett J. 1991. A revision of the genus Trichoderma. II. Infrageneric classification. Canadian Journal of Botany 69: 2357-2372.
    • (1991) Canadian Journal of Botany , vol.69 , pp. 2357-2372
    • Bissett, J.1
  • 4
    • 0033017973 scopus 로고    scopus 로고
    • A method for designing primer sets for speciation studies in filamentous ascomycetes
    • Carbone I, Kohn LM. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556.
    • (1999) Mycologia , vol.91 , pp. 553-556
    • Carbone, I.1    Kohn, L.M.2
  • 5
    • 1642518810 scopus 로고    scopus 로고
    • Taxonomy and phylogenetic relationships of two species of Hypocrea with Trichoderma anamorphs
    • Dodd SL, Lieckfeldt E, Chaverri P, Overton BE, Samuels GJ. 2002. Taxonomy and phylogenetic relationships of two species of Hypocrea with Trichoderma anamorphs. Mycological Progress 1: 409-428.
    • (2002) Mycological Progress , vol.1 , pp. 409-428
    • Dodd, S.L.1    Lieckfeldt, E.2    Chaverri, P.3    Overton, B.E.4    Samuels, G.J.5
  • 7
    • 10644256230 scopus 로고    scopus 로고
    • Endophytes and mycoparasites associated with an indigenous forest tree, Theobroma gileri, in Ecuador and a preliminary assessment of their potential as biocontrol agents of cocoa diseases
    • Evans HC, Holmes KA, Thomas SE. 2003. Endophytes and mycoparasites associated with an indigenous forest tree, Theobroma gileri, in Ecuador and a preliminary assessment of their potential as biocontrol agents of cocoa diseases. Mycological Progress 2: 149-160.
    • (2003) Mycological Progress , vol.2 , pp. 149-160
    • Evans, H.C.1    Holmes, K.A.2    Thomas, S.E.3
  • 8
    • 79955779959 scopus 로고    scopus 로고
    • An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella
    • Gräfenhan T, Schroers HJ, Nirenberg HI, Seifert KA. 2011. An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella. Studies in Mycology 68: 79-113.
    • (2011) Studies In Mycology , vol.68 , pp. 79-113
    • Gräfenhan, T.1    Schroers, H.J.2    Nirenberg, H.I.3    Seifert, K.A.4
  • 9
    • 55149120498 scopus 로고    scopus 로고
    • Exploring the species diversity of Trichoderma in Norwegian drinking water systems by DNA barcoding
    • Hageskal G, Vrålstad T, Knutsen AK, Skaar I. 2008. Exploring the species diversity of Trichoderma in Norwegian drinking water systems by DNA barcoding. Molecular Ecology Resources 8: 1178-1188.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 1178-1188
    • Hageskal, G.1    Vrålstad, T.2    Knutsen, A.K.3    Skaar, I.4
  • 10
    • 48349130017 scopus 로고    scopus 로고
    • Trichoderma martiale sp. nov., a new endophyte from sapwood of Theobroma cacao with a potential for biological control
    • Hanada RE, Jorge Souza T de, Pomella AW, Hebbar KP, Pereira JO, et al. 2008. Trichoderma martiale sp. nov., a new endophyte from sapwood of Theobroma cacao with a potential for biological control. Mycological Research 112: 1335-1343.
    • (2008) Mycological Research , vol.112 , pp. 1335-1343
    • Hanada, R.E.1    De Jorge Souza, T.2    Pomella, A.W.3    Hebbar, K.P.4    Pereira, J.O.5
  • 11
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22: 160-174.
    • (1985) Journal of Molecular Evolution , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 12
    • 33845263131 scopus 로고
    • The morphology and physiology of the genus Eidamia
    • Horne AS, Williamson HS. 1923. The morphology and physiology of the genus Eidamia. Annals of Botany 37: 393-432.
    • (1923) Annals of Botany , vol.37 , pp. 393-432
    • Horne, A.S.1    Williamson, H.S.2
  • 13
    • 67650627521 scopus 로고    scopus 로고
    • Genetic and metabolic biodiversity of Trichoderma from Colombia and adjacent neotropic regions
    • Hoyos-Carvajal L, Orduz S, Bissett J. 2009. Genetic and metabolic biodiversity of Trichoderma from Colombia and adjacent neotropic regions. Fungal Genetics and Biology 46: 615-631.
    • (2009) Fungal Genetics and Biology , vol.46 , pp. 615-631
    • Hoyos-Carvajal, L.1    Orduz, S.2    Bissett, J.3
  • 14
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylo-genetic trees
    • Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylo-genetic trees. Bioinformatics 17: 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 15
    • 77954766174 scopus 로고    scopus 로고
    • European species of Hypocrea I. The green-spored species
    • Jaklitsch WM. 2009. European species of Hypocrea I. The green-spored species. Studies in Mycology 63: 1-91.
    • (2009) Studies In Mycology , vol.63 , pp. 1-91
    • Jaklitsch, W.M.1
  • 16
    • 79955867785 scopus 로고    scopus 로고
    • European species of Hypocrea Part II: Species with hyaline ascospores
    • Jaklitsch WM. 2011. European species of Hypocrea Part II: species with hyaline ascospores. Fungal Diversity 48: 1-250.
    • (2011) Fungal Diversity , vol.48 , pp. 1-250
    • Jaklitsch, W.M.1
  • 17
    • 24944448973 scopus 로고    scopus 로고
    • Hypocrea vogl-mayrii sp. nov. from the Austrian Alps represents a new phylogenetic clade in Hypocrea/Trichoderma
    • Jaklitsch WM, Komon M, Kubicek CP, Druzhinina IS. 2005. Hypocrea vogl-mayrii sp. nov. from the Austrian Alps represents a new phylogenetic clade in Hypocrea/Trichoderma. Mycologia 97: 1365-1378.
    • (2005) Mycologia , vol.97 , pp. 1365-1378
    • Jaklitsch, W.M.1    Komon, M.2    Kubicek, C.P.3    Druzhinina, I.S.4
  • 18
    • 84901338067 scopus 로고    scopus 로고
    • Three green-spored species of Hypocrea with reddish-brown stromata
    • Jaklitsch WM, Kubicek CP, Druzhinina IS. 2008. Three green-spored species of Hypocrea with reddish-brown stromata. Mycologia 100: 790-809.
    • (2008) Mycologia , vol.100 , pp. 790-809
    • Jaklitsch, W.M.1    Kubicek, C.P.2    Druzhinina, I.S.3
  • 19
    • 33845269538 scopus 로고    scopus 로고
    • Hypo-crea rufa/Trichoderma viride: A reassessment and description of five closely related species with and without warted conidia
    • Jaklitsch WM, Samuels GJ, Dodd SL, Lu B-S, Druzhinina IS. 2006. Hypo-crea rufa/Trichoderma viride: a reassessment and description of five closely related species with and without warted conidia. Studies in Mycology 56: 135-177.
    • (2006) Studies In Mycology , vol.56 , pp. 135-177
    • Jaklitsch, W.M.1    Samuels, G.J.2    Dodd, S.L.3    Lu, B.-S.4    Druzhinina, I.S.5
  • 20
    • 84866238596 scopus 로고    scopus 로고
    • Blue pigment in Hypocrea caerulescens sp. nov. and two additional new species in sect
    • Jaklitsch WM, Stadler M, Voglmayr H. 2012. Blue pigment in Hypocrea caerulescens sp. nov. and two additional new species in sect. Trichoderma. Mycologia 104: 925-941.
    • (2012) Trichoderma. Mycologia , vol.104 , pp. 925-941
    • Jaklitsch, W.M.1    Stadler, M.2    Voglmayr, H.3
  • 22
    • 0032750944 scopus 로고    scopus 로고
    • Phylogenetic relationships among asco-mycetes: Evidence from an RNA polymerase II subunit
    • Liu YL, Whelen S, Hall BD. 1999. Phylogenetic relationships among asco-mycetes: evidence from an RNA polymerase II subunit. Molecular Biology and Evolution 16: 1799-1808.
    • (1999) Molecular Biology and Evolution , vol.16 , pp. 1799-1808
    • Liu, Y.L.1    Whelen, S.2    Hall, B.D.3
  • 24
    • 39149141072 scopus 로고    scopus 로고
    • AWTY (are we there yet?): A system for graphical exploration of MCMC convergence in Bayesian phylogenetics
    • Nylander JA, Wilgenbusch JC, Warren DL, Swofford DL. 2008. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581-583.
    • (2008) Bioinformatics , vol.24 , pp. 581-583
    • Nylander, J.A.1    Wilgenbusch, J.C.2    Warren, D.L.3    Swofford, D.L.4
  • 25
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 27
    • 0036064354 scopus 로고    scopus 로고
    • Tricho-derma species associated with the green mold epidemic of commercially grown Agaricus bisporus
    • Samuels GJ, Dodd SL, Gams W, Castlebury LA, Petrini O. 2002. Tricho-derma species associated with the green mold epidemic of commercially grown Agaricus bisporus. Mycologia 94: 146-170.
    • (2002) Mycologia , vol.94 , pp. 146-170
    • Samuels, G.J.1    Dodd, S.L.2    Gams, W.3    Castlebury, L.A.4    Petrini, O.5
  • 29
    • 64049100830 scopus 로고    scopus 로고
    • Trichoderma evansii and T. lieckfeldtiae: Two new T. hamatum-like species
    • Samuels GJ, Ismaiel A. 2009. Trichoderma evansii and T. lieckfeldtiae: two new T. hamatum-like species. Mycologia 101: 142-156.
    • (2009) Mycologia , vol.101 , pp. 142-156
    • Samuels, G.J.1    Ismaiel, A.2
  • 32
    • 33746033832 scopus 로고    scopus 로고
    • Trichoderma theobromicola and T. paucisporum: Two new species isolated from cacao in South America
    • Samuels GJ, Suarez C, Solis K, Holmes KA, Thomas SE, et al. 2006b. Trichoderma theobromicola and T. paucisporum: two new species isolated from cacao in South America. Mycological Research 110: 381-392.
    • (2006) Mycological Research , vol.110 , pp. 381-392
    • Samuels, G.J.1    Suarez, C.2    Solis, K.3    Holmes, K.A.4    Thomas, S.E.5
  • 34
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phyloge-netic analyses with thousands of taxa and mixed models
    • Stamatakis E. 2006a. RAxML-VI-HPC: maximum likelihood-based phyloge-netic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, E.1
  • 36
    • 34347334174 scopus 로고    scopus 로고
    • A multigene phylo-geny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach
    • Sung GH, Sung JM, Hywel-Jones NL, Spatafora JW. 2007. A multigene phylo-geny of Clavicipitaceae (Ascomycota, Fungi): identification of localized incongruence using a combinational bootstrap approach. Molecular Phylo-genetics and Evolution 44: 1204-1223.
    • (2007) Molecular Phylo-genetics and Evolution , vol.44 , pp. 1204-1223
    • Sung, G.H.1    Sung, J.M.2    Hywel-Jones, N.L.3    Spatafora, J.W.4
  • 38
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10: 512-526.
    • (1993) Molecular Biology and Evolution , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 39
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance and maximum parsimony methods. Molecular Biology and Evolution 28: 2731-2739.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 41
    • 0032226105 scopus 로고    scopus 로고
    • Combining datasets with different phylogenetic histories
    • Wiens JJ. 1998. Combining datasets with different phylogenetic histories. Systematic Biology 47: 568-581.
    • (1998) Systematic Biology , vol.47 , pp. 568-581
    • Wiens, J.J.1
  • 42
    • 84867152647 scopus 로고    scopus 로고
    • Trichoderma matsushimae and T. aeroaquaticum: Two aero-aquatic species with Pseudaegerita-like propagules
    • Yamaguchi K, Tsurumi Y, Suzuki R, Chuaseeharonnachai C, Sri-Indrasutdhi V, et al. 2012. Trichoderma matsushimae and T. aeroaquaticum: two aero-aquatic species with Pseudaegerita-like propagules. Mycologia 104: 1109-1120.
    • (2012) Mycologia , vol.104 , pp. 1109-1120
    • Yamaguchi, K.1    Tsurumi, Y.2    Suzuki, R.3    Chuaseeharonnachai, C.4    Sri-Indrasutdhi, V.5
  • 44
    • 58049127826 scopus 로고    scopus 로고
    • Fungal diversity in the rhizosphere of endemic plant species of Tenerife (Canary Islands): Relationship to vegetation zones and environmental factors
    • Zachow C, Berg C, Müller H, Meincke R, Komon-Zelazowska M, et al. 2009. Fungal diversity in the rhizosphere of endemic plant species of Tenerife (Canary Islands): relationship to vegetation zones and environmental factors. ISME Journal 3: 79-92.
    • (2009) ISME Journal , vol.3 , pp. 79-92
    • Zachow, C.1    Berg, C.2    Müller, H.3    Meincke, R.4    Komon-Zelazowska, M.5


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