메뉴 건너뛰기




Volumn 27, Issue , 2014, Pages 54-59

Long range regulation of the sonic hedgehog gene

Author keywords

[No Author keywords available]

Indexed keywords

SONIC HEDGEHOG PROTEIN; TRANSCRIPTION FACTOR ETS;

EID: 84901292280     PISSN: 0959437X     EISSN: 18790380     Source Type: Journal    
DOI: 10.1016/j.gde.2014.03.011     Document Type: Review
Times cited : (23)

References (40)
  • 1
    • 20044366725 scopus 로고    scopus 로고
    • Highly conserved non-coding sequences are associated with vertebrate development
    • Woolfe A., Goodson M., Goode D.K., Snell P., McEwen G.K., et al. Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol 2005, 3:e7.
    • (2005) PLoS Biol , vol.3
    • Woolfe, A.1    Goodson, M.2    Goode, D.K.3    Snell, P.4    McEwen, G.K.5
  • 2
    • 33751316959 scopus 로고    scopus 로고
    • In vivo enhancer analysis of human conserved non-coding sequences
    • Pennacchio L.A., Ahituv N., Moses A.M., Prabhakar S., Nobrega M.A., et al. In vivo enhancer analysis of human conserved non-coding sequences. Nature 2006, 444:499-502.
    • (2006) Nature , vol.444 , pp. 499-502
    • Pennacchio, L.A.1    Ahituv, N.2    Moses, A.M.3    Prabhakar, S.4    Nobrega, M.A.5
  • 3
    • 84875249885 scopus 로고    scopus 로고
    • An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape
    • Marinic M., Aktas T., Ruf S., Spitz F. An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape. Dev Cell 2013, 24:530-542.
    • (2013) Dev Cell , vol.24 , pp. 530-542
    • Marinic, M.1    Aktas, T.2    Ruf, S.3    Spitz, F.4
  • 4
    • 81855227640 scopus 로고    scopus 로고
    • A regulatory archipelago controls Hox genes transcription in digits
    • Montavon T., Soshnikova N., Mascrez B., Joye E., Thevenet L., et al. A regulatory archipelago controls Hox genes transcription in digits. Cell 2011, 147:1132-1145.
    • (2011) Cell , vol.147 , pp. 1132-1145
    • Montavon, T.1    Soshnikova, N.2    Mascrez, B.3    Joye, E.4    Thevenet, L.5
  • 5
    • 84885834870 scopus 로고    scopus 로고
    • Pathogenic variants in non-protein-coding sequences
    • Makrythanasis P., Antonarakis S.E. Pathogenic variants in non-protein-coding sequences. Clin Genet 2013, 84:422-428.
    • (2013) Clin Genet , vol.84 , pp. 422-428
    • Makrythanasis, P.1    Antonarakis, S.E.2
  • 6
    • 0030837885 scopus 로고    scopus 로고
    • Cytogenetic rearrangements involving the loss of the Sonic Hedgehog gene at 7q36 cause holoprosencephaly
    • Roessler E., Ward D.E., Gaudenz K., Belloni E., Scherer S.W., et al. Cytogenetic rearrangements involving the loss of the Sonic Hedgehog gene at 7q36 cause holoprosencephaly. Hum Genet 1997, 100:172-181.
    • (1997) Hum Genet , vol.100 , pp. 172-181
    • Roessler, E.1    Ward, D.E.2    Gaudenz, K.3    Belloni, E.4    Scherer, S.W.5
  • 7
    • 84863869789 scopus 로고    scopus 로고
    • Human limb abnormalities caused by disruption of hedgehog signaling
    • Anderson E., Peluso S., Lettice L.A., Hill R.E. Human limb abnormalities caused by disruption of hedgehog signaling. Trends Genet 2012, 28:364-373.
    • (2012) Trends Genet , vol.28 , pp. 364-373
    • Anderson, E.1    Peluso, S.2    Lettice, L.A.3    Hill, R.E.4
  • 8
    • 55049108856 scopus 로고    scopus 로고
    • Regulation of a remote Shh forebrain enhancer by the Six3 homeoprotein
    • Jeong Y., Leskow F.C., El-Jaick K., Roessler E., Muenke M., et al. Regulation of a remote Shh forebrain enhancer by the Six3 homeoprotein. Nat Genet 2008, 40:1348-1353.
    • (2008) Nat Genet , vol.40 , pp. 1348-1353
    • Jeong, Y.1    Leskow, F.C.2    El-Jaick, K.3    Roessler, E.4    Muenke, M.5
  • 9
    • 33645073400 scopus 로고    scopus 로고
    • A functional screen for sonic hedgehog regulatory elements across a 1Mb interval identifies long-range ventral forebrain enhancers
    • Jeong Y., El-Jaick K., Roessler E., Muenke M., Epstein D.J. A functional screen for sonic hedgehog regulatory elements across a 1Mb interval identifies long-range ventral forebrain enhancers. Development 2006, 133:761-772.
    • (2006) Development , vol.133 , pp. 761-772
    • Jeong, Y.1    El-Jaick, K.2    Roessler, E.3    Muenke, M.4    Epstein, D.J.5
  • 10
    • 68549123708 scopus 로고    scopus 로고
    • A cluster of three long-range enhancers directs regional Shh expression in the epithelial linings
    • Sagai T., Amano T., Tamura M., Mizushina Y., Sumiyama K., et al. A cluster of three long-range enhancers directs regional Shh expression in the epithelial linings. Development 2009, 136:1665-1674.
    • (2009) Development , vol.136 , pp. 1665-1674
    • Sagai, T.1    Amano, T.2    Tamura, M.3    Mizushina, Y.4    Sumiyama, K.5
  • 11
    • 0032915095 scopus 로고    scopus 로고
    • Regionalization of Sonic hedgehog transcription along the anteroposterior axis of the mouse central nervous system is regulated by Hnf3-dependent and -independent mechanisms
    • Epstein D.J., McMahon A.P., Joyner A.L. Regionalization of Sonic hedgehog transcription along the anteroposterior axis of the mouse central nervous system is regulated by Hnf3-dependent and -independent mechanisms. Development 1999, 126:281-292.
    • (1999) Development , vol.126 , pp. 281-292
    • Epstein, D.J.1    McMahon, A.P.2    Joyner, A.L.3
  • 12
    • 78751522900 scopus 로고    scopus 로고
    • Spatial and temporal requirements for sonic hedgehog in the regulation of thalamic interneuron identity
    • Jeong Y., Dolson D.K., Waclaw R.R., Matise M.P., Sussel L., et al. Spatial and temporal requirements for sonic hedgehog in the regulation of thalamic interneuron identity. Development 2011, 138:531-541.
    • (2011) Development , vol.138 , pp. 531-541
    • Jeong, Y.1    Dolson, D.K.2    Waclaw, R.R.3    Matise, M.P.4    Sussel, L.5
  • 13
    • 84892367532 scopus 로고    scopus 로고
    • A novel regulatory element for Shh expression in the lung and gut of mouse embryos
    • Tsukiji N., Amano T., Shiroishi T. A novel regulatory element for Shh expression in the lung and gut of mouse embryos. Mech Dev 2013, 131:127-136.
    • (2013) Mech Dev , vol.131 , pp. 127-136
    • Tsukiji, N.1    Amano, T.2    Shiroishi, T.3
  • 14
    • 77954960062 scopus 로고    scopus 로고
    • Phenotypic robustness conferred by apparently redundant transcriptional enhancers
    • Frankel N., Davis G.K., Vargas D., Wang S., Payre F., et al. Phenotypic robustness conferred by apparently redundant transcriptional enhancers. Nature 2010, 466:490-493.
    • (2010) Nature , vol.466 , pp. 490-493
    • Frankel, N.1    Davis, G.K.2    Vargas, D.3    Wang, S.4    Payre, F.5
  • 15
    • 77956521381 scopus 로고    scopus 로고
    • Shadow enhancers foster robustness of Drosophila gastrulation
    • Perry M.W., Boettiger A.N., Bothma J.P., Levine M. Shadow enhancers foster robustness of Drosophila gastrulation. Curr Biol 2010, 20:1562-1567.
    • (2010) Curr Biol , vol.20 , pp. 1562-1567
    • Perry, M.W.1    Boettiger, A.N.2    Bothma, J.P.3    Levine, M.4
  • 16
    • 84885483482 scopus 로고    scopus 로고
    • Shadow enhancers flanking the HoxB cluster direct dynamic Hox expression in early heart and endoderm development
    • Nolte C., Jinks T., Wang X., Martinez Pastor M.T., Krumlauf R. Shadow enhancers flanking the HoxB cluster direct dynamic Hox expression in early heart and endoderm development. Dev Biol 2013, 383:158-173.
    • (2013) Dev Biol , vol.383 , pp. 158-173
    • Nolte, C.1    Jinks, T.2    Wang, X.3    Martinez Pastor, M.T.4    Krumlauf, R.5
  • 17
    • 0042810698 scopus 로고    scopus 로고
    • A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
    • Lettice L.A., Heaney S.J., Purdie L.A., Li L., de Beer P., et al. A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly. Hum Mol Genet 2003, 12:1725-1735.
    • (2003) Hum Mol Genet , vol.12 , pp. 1725-1735
    • Lettice, L.A.1    Heaney, S.J.2    Purdie, L.A.3    Li, L.4    de Beer, P.5
  • 18
    • 0346040475 scopus 로고    scopus 로고
    • Phylogenetic conservation of a limb-specific, cis-acting regulator of Sonic hedgehog (Shh)
    • Sagai T., Masuya H., Tamura M., Shimizu K., Yada Y., et al. Phylogenetic conservation of a limb-specific, cis-acting regulator of Sonic hedgehog (Shh). Mamm Genome 2004, 15:23-34.
    • (2004) Mamm Genome , vol.15 , pp. 23-34
    • Sagai, T.1    Masuya, H.2    Tamura, M.3    Shimizu, K.4    Yada, Y.5
  • 19
    • 14844341770 scopus 로고    scopus 로고
    • Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb
    • Sagai T., Hosoya M., Mizushina Y., Tamura M., Shiroishi T. Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb. Development 2005, 132:797-803.
    • (2005) Development , vol.132 , pp. 797-803
    • Sagai, T.1    Hosoya, M.2    Mizushina, Y.3    Tamura, M.4    Shiroishi, T.5
  • 20
    • 84871033710 scopus 로고    scopus 로고
    • Hox genes regulate digit patterning by controlling the wavelength of a Turing-type mechanism
    • Sheth R., Marcon L., Bastida M.F., Junco M., Quintana L., et al. Hox genes regulate digit patterning by controlling the wavelength of a Turing-type mechanism. Science 2012, 338:1476-1480.
    • (2012) Science , vol.338 , pp. 1476-1480
    • Sheth, R.1    Marcon, L.2    Bastida, M.F.3    Junco, M.4    Quintana, L.5
  • 21
    • 42249088278 scopus 로고    scopus 로고
    • Integration of growth and specification in chick wing digit-patterning
    • Towers M., Mahood R., Yin Y., Tickle C. Integration of growth and specification in chick wing digit-patterning. Nature 2008, 452:882-886.
    • (2008) Nature , vol.452 , pp. 882-886
    • Towers, M.1    Mahood, R.2    Yin, Y.3    Tickle, C.4
  • 22
    • 0037083760 scopus 로고    scopus 로고
    • Mutual genetic antagonism involving GLI3 and dHAND prepatterns the vertebrate limb bud mesenchyme prior to SHH signaling
    • te Welscher P., Fernandez-Teran M., Ros M.A., Zeller R. Mutual genetic antagonism involving GLI3 and dHAND prepatterns the vertebrate limb bud mesenchyme prior to SHH signaling. Genes Dev 2002, 16:421-426.
    • (2002) Genes Dev , vol.16 , pp. 421-426
    • Te Welscher, P.1    Fernandez-Teran, M.2    Ros, M.A.3    Zeller, R.4
  • 23
    • 21344455343 scopus 로고    scopus 로고
    • Early developmental arrest of mammalian limbs lacking HoxA/HoxD gene function
    • Kmita M., Tarchini B., Zakany J., Logan M., Tabin C.J., et al. Early developmental arrest of mammalian limbs lacking HoxA/HoxD gene function. Nature 2005, 435:1113-1116.
    • (2005) Nature , vol.435 , pp. 1113-1116
    • Kmita, M.1    Tarchini, B.2    Zakany, J.3    Logan, M.4    Tabin, C.J.5
  • 24
    • 33750450038 scopus 로고    scopus 로고
    • Regulatory constraints in the evolution of the tetrapod limb anterior-posterior polarity
    • Tarchini B., Duboule D., Kmita M. Regulatory constraints in the evolution of the tetrapod limb anterior-posterior polarity. Nature 2006, 443:985-988.
    • (2006) Nature , vol.443 , pp. 985-988
    • Tarchini, B.1    Duboule, D.2    Kmita, M.3
  • 25
    • 77952350426 scopus 로고    scopus 로고
    • Distinct roles of Hand2 in initiating polarity and posterior Shh expression during the onset of mouse limb bud development
    • Galli A., Robay D., Osterwalder M., Bao X., Benazet J.D., et al. Distinct roles of Hand2 in initiating polarity and posterior Shh expression during the onset of mouse limb bud development. PLoS Genet 2010, 6:e1000901.
    • (2010) PLoS Genet , vol.6
    • Galli, A.1    Robay, D.2    Osterwalder, M.3    Bao, X.4    Benazet, J.D.5
  • 26
    • 66149089187 scopus 로고    scopus 로고
    • DNA binding-dependent and -independent functions of the Hand2 transcription factor during mouse embryogenesis
    • Liu N., Barbosa A.C., Chapman S.L., Bezprozvannaya S., Qi X., et al. DNA binding-dependent and -independent functions of the Hand2 transcription factor during mouse embryogenesis. Development 2009, 136:933-942.
    • (2009) Development , vol.136 , pp. 933-942
    • Liu, N.1    Barbosa, A.C.2    Chapman, S.L.3    Bezprozvannaya, S.4    Qi, X.5
  • 27
    • 33745584051 scopus 로고    scopus 로고
    • Pbx1/Pbx2 requirement for distal limb patterning is mediated by the hierarchical control of Hox gene spatial distribution and Shh expression
    • Capellini T.D., Di Giacomo G., Salsi V., Brendolan A., Ferretti E., et al. Pbx1/Pbx2 requirement for distal limb patterning is mediated by the hierarchical control of Hox gene spatial distribution and Shh expression. Development 2006, 133:2263-2273.
    • (2006) Development , vol.133 , pp. 2263-2273
    • Capellini, T.D.1    Di Giacomo, G.2    Salsi, V.3    Brendolan, A.4    Ferretti, E.5
  • 28
    • 58149463874 scopus 로고    scopus 로고
    • Chromosomal dynamics at the Shh locus: limb bud-specific differential regulation of competence and active transcription
    • Amano T., Sagai T., Tanabe H., Mizushina Y., Nakazawa H., et al. Chromosomal dynamics at the Shh locus: limb bud-specific differential regulation of competence and active transcription. Dev Cell 2009, 16:47-57.
    • (2009) Dev Cell , vol.16 , pp. 47-57
    • Amano, T.1    Sagai, T.2    Tanabe, H.3    Mizushina, Y.4    Nakazawa, H.5
  • 30
    • 25844463577 scopus 로고    scopus 로고
    • Function and regulation of Alx4 in limb development: complex genetic interactions with Gli3 and Shh
    • Kuijper S., Feitsma H., Sheth R., Korving J., Reijnen M., et al. Function and regulation of Alx4 in limb development: complex genetic interactions with Gli3 and Shh. Dev Biol 2005, 285:533-544.
    • (2005) Dev Biol , vol.285 , pp. 533-544
    • Kuijper, S.1    Feitsma, H.2    Sheth, R.3    Korving, J.4    Reijnen, M.5
  • 31
    • 84856995675 scopus 로고    scopus 로고
    • Opposing functions of the ETS factor family define Shh spatial expression in limb buds and underlie polydactyly
    • Lettice L.A., Williamson I., Wiltshire J.H., Peluso S., Devenney P.S., et al. Opposing functions of the ETS factor family define Shh spatial expression in limb buds and underlie polydactyly. Dev Cell 2012, 22:459-467.
    • (2012) Dev Cell , vol.22 , pp. 459-467
    • Lettice, L.A.1    Williamson, I.2    Wiltshire, J.H.3    Peluso, S.4    Devenney, P.S.5
  • 32
    • 77957304946 scopus 로고    scopus 로고
    • Twist1 activity thresholds define multiple functions in limb development
    • Krawchuk D., Weiner S.J., Chen Y.T., Lu B.C., Costantini F., et al. Twist1 activity thresholds define multiple functions in limb development. Dev Biol 2010, 347:133-146.
    • (2010) Dev Biol , vol.347 , pp. 133-146
    • Krawchuk, D.1    Weiner, S.J.2    Chen, Y.T.3    Lu, B.C.4    Costantini, F.5
  • 33
    • 79953206643 scopus 로고    scopus 로고
    • Axial Hox9 activity establishes the posterior field in the developing forelimb
    • Xu B., Wellik D.M. Axial Hox9 activity establishes the posterior field in the developing forelimb. Proc Natl Acad Sci U S A 2011, 108:4888-4891.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 4888-4891
    • Xu, B.1    Wellik, D.M.2
  • 34
    • 84888341821 scopus 로고    scopus 로고
    • Hox5 interacts with Plzf to restrict Shh expression in the developing forelimb
    • Xu B., Hrycaj S.M., McIntyre D.C., Baker N.C., Takeuchi J.K., et al. Hox5 interacts with Plzf to restrict Shh expression in the developing forelimb. Proc Natl Acad Sci U S A 2013, 110:19438-19443.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 19438-19443
    • Xu, B.1    Hrycaj, S.M.2    McIntyre, D.C.3    Baker, N.C.4    Takeuchi, J.K.5
  • 35
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon J.R., Selvaraj S., Yue F., Kim A., Li Y., et al. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 2012, 485:376-380.
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5
  • 36
    • 84879232679 scopus 로고    scopus 로고
    • Genome organization and long-range regulation of gene expression by enhancers
    • Smallwood A., Ren B. Genome organization and long-range regulation of gene expression by enhancers. Curr Opin Cell Biol 2013, 25:387-394.
    • (2013) Curr Opin Cell Biol , vol.25 , pp. 387-394
    • Smallwood, A.1    Ren, B.2
  • 37
    • 79955550445 scopus 로고    scopus 로고
    • A user's guide to the encyclopedia of DNA elements (ENCODE)
    • Consortium T.E.P. A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol 2011, 9:e1001046.
    • (2011) PLoS Biol , vol.9
    • Consortium, T.E.P.1
  • 38
    • 84879264708 scopus 로고    scopus 로고
    • ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering
    • Gaj T., Gersbach C.A., Barbas C.F. ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. Trends Biotechnol 2013, 31:397-405.
    • (2013) Trends Biotechnol , vol.31 , pp. 397-405
    • Gaj, T.1    Gersbach, C.A.2    Barbas, C.F.3
  • 39
    • 68149180869 scopus 로고    scopus 로고
    • A transposon-based chromosomal engineering method to survey a large cis-regulatory landscape in mice
    • Kokubu C., Horie K., Abe K., Ikeda R., Mizuno S., et al. A transposon-based chromosomal engineering method to survey a large cis-regulatory landscape in mice. Nat Genet 2009, 41:946-952.
    • (2009) Nat Genet , vol.41 , pp. 946-952
    • Kokubu, C.1    Horie, K.2    Abe, K.3    Ikeda, R.4    Mizuno, S.5
  • 40
    • 79953176250 scopus 로고    scopus 로고
    • Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor
    • Ruf S., Symmons O., Uslu V.V., Dolle D., Hot C., et al. Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor. Nat Genet 2011, 43:379-386.
    • (2011) Nat Genet , vol.43 , pp. 379-386
    • Ruf, S.1    Symmons, O.2    Uslu, V.V.3    Dolle, D.4    Hot, C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.