Capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry for top-down characterization of the mycobacterium marinum secretome

Analytical Chemistry

Volumn 86, Issue 10, 2014, Pages 4873-4878

  Zhao, Yimeng ^a   Sun, Liangliang ^a   Champion, Matthew M ^a   Knierman, Michael D ^b   Dovichi, Norman J ^a  

^a UNIVERSITY OF NOTRE DAME   (United States)

^b ELI LILLY AND COMPANY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; ACETYLATION; AMINO ACIDS; FORMIC ACID; GENE ENCODING; IONIC STRENGTH; MASS SPECTROMETRY; PH;

ACID SOLUTIONS; AQUEOUS ACETIC ACID; CAPILLARY ZONE ELECTROPHORESIS; CULTURE FILTRATE; HIGH RESOLUTION; N-TERMINAL METHIONINE EXCISIONS; POST-TRANSLATIONAL MODIFICATIONS; PROTEIN SOLUBILITY;

CAPILLARY ELECTROPHORESIS;

BACTERIAL PROTEIN; PEPTIDE;

CAPILLARY ELECTROPHORESIS; CHEMISTRY; ELECTROSPRAY MASS SPECTROMETRY; MYCOBACTERIUM MARINUM; PROTEIN PROCESSING; TANDEM MASS SPECTROMETRY;

BACTERIAL PROTEINS; ELECTROPHORESIS, CAPILLARY; MYCOBACTERIUM MARINUM; PEPTIDES; PROTEIN PROCESSING, POST-TRANSLATIONAL; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; TANDEM MASS SPECTROMETRY;

EID: 84901259899     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac500092q     Document Type: Article

References (35)

1. Aebersold, R.; Goodlett, D. R. Chem. Rev. 2001, 101, 269-295
2. Angel, T. E.; Aryal, U. K.; Hengel, S. M.; Baker, E. S.; Kelly, R. T.; Robinson, E. W.; Smith, R. D. Chem. Soc. Rev. 2012, 41, 3912-3928
3. Han, X.; Aslanian, A.; Yates, J. R., 3rd. Curr. Opin. Chem. Biol. 2008, 12, 483-490
4. Chait, B. T. Science 2006, 314, 65-66
5. Kelleher, N. L. Anal. Chem. 2004, 76, 197A-203A
6. Kelleher, N. L.; Lin, H. Y.; Valaskovic, G. A.; Aaserud, D. J.; Fridriksson, E. K.; McLafferty, F. W. J. Am. Chem. Soc. 1999, 121, 806-812
7. Ge, Y.; Lawhorn, B. G.; ElNaggar, M.; Strauss, E.; Park, J. H.; Begley, T. P.; McLafferty, F. W. J. Am. Chem. Soc. 2002, 124, 672-678
8. McLafferty, F. W.; Fridriksson, E. K.; Horn, D. M.; Lewis, M. A.; Zubarev, R. A. Science 1999, 284, 1289-1290
9. Han, X. M.; Jin, M.; Breuker, K.; McLafferty, F. W. Science 2006, 314, 109-112
10. Tran, J. C.; Zamdborg, L.; Ahlf, D. R.; Lee, J. E.; Catherman, A. D.; Durbin, K. R.; Tipton, J. D.; Vellaichamy, A.; Kellie, J. F.; Li, M. X.; Wu, C.; Sweet, S. M. M.; Early, B. P.; Siuti, N.; LeDuc, R. D.; Compton, P. D.; Thomas, P. M.; Kelleher, N. L. Nature 2011, 480, 254-258
11. Ansong, C.; Wu, S.; Meng, D.; Liu, X. W.; Brewer, H. M.; Kaiser, B. L. D.; Nakayasu, E. S.; Cort, J. R.; Pevzner, P.; Smith, R. D.; Heffron, F.; Adkins, J. N.; Pasa-Tolic, L. Proc. Natl. Acad. Sci. U.S.A. 2013, 110, 10153-10158
12. Catherman, A. D.; Li, M.; Tran, J. C.; Durbin, K. R.; Compton, P. D.; Early, B. P.; Thomas, P. M.; Kelleher, N. L. Anal. Chem. 2013, 85, 1880-1888
13. Tipton, J. D.; Tran, J. C.; Catherman, A. D.; Ahlf, D. R.; Durbin, K. R.; Lee, J. E.; Kellie, J. F.; Kelleher, N. L.; Hendrickson, C. L.; Marshall, A. G. Anal. Chem. 2012, 84, 2111
14. Vellaichamy, A.; Tran, J. C.; Catherman, A. D.; Lee, J. E.; Kellie, J. F.; Sweet, S. M.; Zamdborg, L.; Thomas, P. M.; Ahlf, D. R.; Durbin, K. R.; Valaskovic, G. A.; Kelleher, N. L. Anal. Chem. 2010, 82, 1234-1244
15. Chi, A.; Bai, D. L.; Geer, L. Y.; Shabanowitz, J.; Hunt, D. F. Int. J. Mass Spectrom. 2007, 259, 197-203
16. Catherman, A. D.; Durbin, K. R.; Ahlf, D. R.; Early, B. P.; Fellers, R. T.; Tran, J. C.; Thomas, P. M.; Kelleher, N. L. Mol. Cell. Proteomics 2013, 12, 3465-3473
17. Simó, C.; Herrero, M.; Neusüss, C.; Pelzing, M.; Kenndler, E.; Barbas, C.; Ibáñez, E.; Cifuentes, A. Electrophoresis 2005, 26, 2674-2683
18. Jorgenson, J. W.; Lukacs, K. D. Science 1983, 222, 266-272
19. Haselberg, R.; de Jong, G. J.; Somsen, G. W. Anal. Chem. 2013, 85, 2289-2296
20. Haselberg, R.; Ratnayake, C. K.; de Jong, G. J.; Somsen, G. W. J. Chromatogr., A 2010, 1217, 7605-7611
21. Valaskovic, G. A.; Kelleher, N. L.; McLafferty, F. W. Science 1996, 273, 1199-1202
22. Jensen, P. K.; Pasa-Tolic, L.; Anderson, G. A.; Horner, J. A.; Lipton, M. S.; Bruce, J. E.; Smith, R. D. Anal. Chem. 1999, 71, 2076-2084
23. Wojcik, R.; Dada, O. O.; Sadilek, M.; Dovichi, N. J. Rapid Commun. Mass Spectrom. 2010, 24, 2554-2560
24. Li, Y.; Champion, M. M.; Sun, L.; Champion, P. A.; Wojcik, R.; Dovichi, N. J. Anal. Chem. 2012, 84, 1617-1622
25. Sun, L.; Zhu, G.; Li, Y.; Wojcik, R.; Yang, P.; Dovichi, N. J. Proteomics 2012, 12, 3013-3019
26. Li, Y.; Wojcik, R.; Dovichi, N. J.; Champion, M. M. Anal. Chem. 2012, 84, 6116-6121
27. Zhu, G.; Sun, L.; Yan, X.; Dovichi, N. J. Anal. Chem. 2013, 85, 2569-2573
28. Yan, X.; Essaka, D. C.; Sun, L.; Zhu, G.; Dovichi, N. J. Proteomics 2013, 13, 2546-2551
29. Sun, L.; Knierman, M. D.; Zhu, G.; Dovichi, N. J. Anal. Chem. 2013, 85, 5989-2995
30. Li, Y.; Compton, P. D.; Tran, J. C.; Ntai, I.; Kelleher, N. L. Proteomics 2014, 10.1002/pmic.201300381
31. Champion, P. A.; Champion, M. M.; Manzanillo, P.; Cox, J. S. Mol. Microbiol. 2009, 73, 950-962
32. Liu, X.; Inbar, Y.; Dorrestein, P. C.; Wynne, C.; Edwards, N.; Souda, P.; Whitelegge, J. P.; Bafna, V.; Pevzner, P. A. Mol. Cell. Proteomics 2010, 9, 2772-2782
33. Speers, A. E.; Wu, C. C. Chem. Rev. 2007, 107, 3687-3714
34. Weast, R. C., Ed. CRC Handbook of Chemistry and Physics, 70 th ed.; CRC Press: Boca Raton, FL, 1989; p D-221.
35. Qiao, Y.; Di, Z.; Ma, Y.; Ma, P.; Xia, S. Chin. J. Chem. Eng. 2010, 18, 446-454