메뉴 건너뛰기




Volumn 15, Issue 5, 2014, Pages 587-599

Genomic analyses of pneumococci from children with sickle cell disease expose host-specific bacterial adaptations and deficits in current interventions

Author keywords

[No Author keywords available]

Indexed keywords

PENICILLIN DERIVATIVE; PNEUMOCOCCUS VACCINE; BACTERIAL PROTEIN;

EID: 84901054480     PISSN: 19313128     EISSN: 19346069     Source Type: Journal    
DOI: 10.1016/j.chom.2014.04.005     Document Type: Article
Times cited : (51)

References (56)
  • 1
    • 0242298737 scopus 로고    scopus 로고
    • Invasive pneumococcal infections in children with sickle cell disease in the era of penicillin prophylaxis, antibiotic resistance, and 23-valent pneumococcal polysaccharide vaccination
    • T.V. Adamkiewicz, S. Sarnaik, G.R. Buchanan, R.V. Iyer, S.T. Miller, C.H. Pegelow, Z.R. Rogers, E. Vichinsky, J. Elliott, and R.R. Facklam et al. Invasive pneumococcal infections in children with sickle cell disease in the era of penicillin prophylaxis, antibiotic resistance, and 23-valent pneumococcal polysaccharide vaccination J. Pediatr. 143 2003 438 444
    • (2003) J. Pediatr. , vol.143 , pp. 438-444
    • Adamkiewicz, T.V.1    Sarnaik, S.2    Buchanan, G.R.3    Iyer, R.V.4    Miller, S.T.5    Pegelow, C.H.6    Rogers, Z.R.7    Vichinsky, E.8    Elliott, J.9    Facklam, R.R.10
  • 2
    • 40949107353 scopus 로고    scopus 로고
    • Effectiveness of the 7-valent pneumococcal conjugate vaccine in children with sickle cell disease in the first decade of life
    • T.V. Adamkiewicz, B.J. Silk, J. Howgate, W. Baughman, G. Strayhorn, K. Sullivan, and M.M. Farley Effectiveness of the 7-valent pneumococcal conjugate vaccine in children with sickle cell disease in the first decade of life Pediatrics 121 2008 562 569
    • (2008) Pediatrics , vol.121 , pp. 562-569
    • Adamkiewicz, T.V.1    Silk, B.J.2    Howgate, J.3    Baughman, W.4    Strayhorn, G.5    Sullivan, K.6    Farley, M.M.7
  • 5
    • 77955494173 scopus 로고    scopus 로고
    • Susceptibility to invasive bacterial infections in children with sickle cell disease
    • A.J. Battersby, H.H. Knox-Macaulay, and E.D. Carrol Susceptibility to invasive bacterial infections in children with sickle cell disease Pediatr. Blood Cancer 55 2010 401 406
    • (2010) Pediatr. Blood Cancer , vol.55 , pp. 401-406
    • Battersby, A.J.1    Knox-Macaulay, H.H.2    Carrol, E.D.3
  • 6
    • 84865144676 scopus 로고    scopus 로고
    • CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection
    • D. Bikard, A. Hatoum-Aslan, D. Mucida, and L.A. Marraffini CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection Cell Host Microbe 12 2012 177 186
    • (2012) Cell Host Microbe , vol.12 , pp. 177-186
    • Bikard, D.1    Hatoum-Aslan, A.2    Mucida, D.3    Marraffini, L.A.4
  • 7
    • 80053328301 scopus 로고    scopus 로고
    • Increased concentrations of IL-18 and uric acid in sickle cell anemia: Contribution of hemolysis, endothelial activation and the inflammasome
    • B.A. Cerqueira, W.V. Boas, A.D. Zanette, M.G. Reis, and M.S. Goncalves Increased concentrations of IL-18 and uric acid in sickle cell anemia: contribution of hemolysis, endothelial activation and the inflammasome Cytokine 56 2011 471 476
    • (2011) Cytokine , vol.56 , pp. 471-476
    • Cerqueira, B.A.1    Boas, W.V.2    Zanette, A.D.3    Reis, M.G.4    Goncalves, M.S.5
  • 11
    • 56249124952 scopus 로고    scopus 로고
    • Impact of conjugate pneumococcal vaccines on antibiotic resistance
    • R. Dagan, and K.P. Klugman Impact of conjugate pneumococcal vaccines on antibiotic resistance Lancet Infect. Dis. 8 2008 785 795
    • (2008) Lancet Infect. Dis. , vol.8 , pp. 785-795
    • Dagan, R.1    Klugman, K.P.2
  • 15
    • 65549108485 scopus 로고    scopus 로고
    • Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14
    • F. Ding, P. Tang, M.H. Hsu, P. Cui, S. Hu, J. Yu, and C.H. Chiu Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14 BMC Genomics 10 2009 158
    • (2009) BMC Genomics , vol.10 , pp. 158
    • Ding, F.1    Tang, P.2    Hsu, M.H.3    Cui, P.4    Hu, S.5    Yu, J.6    Chiu, C.H.7
  • 17
    • 0027093121 scopus 로고
    • Lactate exchange and removal abilities in sickle cell patients and in untrained and trained healthy humans
    • H. Freund, J. Lonsdorfer, S. Oyono-Enguéllé, A. Lonsdorfer, and P. Bogui Lactate exchange and removal abilities in sickle cell patients and in untrained and trained healthy humans J. Appl. Physiol. 73 1992 2580 2587
    • (1992) J. Appl. Physiol. , vol.73 , pp. 2580-2587
    • Freund, H.1    Lonsdorfer, J.2    Oyono-Enguéllé, S.3    Lonsdorfer, A.4    Bogui, P.5
  • 20
    • 34249029657 scopus 로고    scopus 로고
    • Incidence of invasive pneumococcal disease among individuals with sickle cell disease before and after the introduction of the pneumococcal conjugate vaccine
    • N.B. Halasa, S.M. Shankar, T.R. Talbot, P.G. Arbogast, E.F. Mitchel, W.C. Wang, W. Schaffner, A.S. Craig, and M.R. Griffin Incidence of invasive pneumococcal disease among individuals with sickle cell disease before and after the introduction of the pneumococcal conjugate vaccine Clin. Infect. Dis. 44 2007 1428 1433
    • (2007) Clin. Infect. Dis. , vol.44 , pp. 1428-1433
    • Halasa, N.B.1    Shankar, S.M.2    Talbot, T.R.3    Arbogast, P.G.4    Mitchel, E.F.5    Wang, W.C.6    Schaffner, W.7    Craig, A.S.8    Griffin, M.R.9
  • 22
    • 77950671568 scopus 로고    scopus 로고
    • Pan-genome analysis provides much higher strain typing resolution than multi-locus sequence typing
    • B.G. Hall, G.D. Ehrlich, and F.Z. Hu Pan-genome analysis provides much higher strain typing resolution than multi-locus sequence typing Microbiology 156 2010 1060 1068
    • (2010) Microbiology , vol.156 , pp. 1060-1068
    • Hall, B.G.1    Ehrlich, G.D.2    Hu, F.Z.3
  • 23
    • 43149085041 scopus 로고    scopus 로고
    • De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer
    • D. Hernandez, P. François, L. Farinelli, M. Osterås, and J. Schrenzel De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer Genome Res. 18 2008 802 809
    • (2008) Genome Res. , vol.18 , pp. 802-809
    • Hernandez, D.1    François, P.2    Farinelli, L.3    Osterås, M.4    Schrenzel, J.5
  • 24
    • 37349009553 scopus 로고    scopus 로고
    • Incidence of pneumococcal disease due to non-pneumococcal conjugate vaccine (PCV7) serotypes in the United States during the era of widespread PCV7 vaccination, 1998-2004
    • L.A. Hicks, L.H. Harrison, B. Flannery, J.L. Hadler, W. Schaffner, A.S. Craig, D. Jackson, A. Thomas, B. Beall, and R. Lynfield et al. Incidence of pneumococcal disease due to non-pneumococcal conjugate vaccine (PCV7) serotypes in the United States during the era of widespread PCV7 vaccination, 1998-2004 J. Infect. Dis. 196 2007 1346 1354
    • (2007) J. Infect. Dis. , vol.196 , pp. 1346-1354
    • Hicks, L.A.1    Harrison, L.H.2    Flannery, B.3    Hadler, J.L.4    Schaffner, W.5    Craig, A.S.6    Jackson, D.7    Thomas, A.8    Beall, B.9    Lynfield, R.10
  • 25
    • 0037404579 scopus 로고    scopus 로고
    • Iron in sickle cell disease: A review why less is better
    • P.R. Koduri Iron in sickle cell disease: a review why less is better Am. J. Hematol. 73 2003 59 63
    • (2003) Am. J. Hematol. , vol.73 , pp. 59-63
    • Koduri, P.R.1
  • 26
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • L. Li, C.J. Stoeckert Jr., and D.S. Roos OrthoMCL: identification of ortholog groups for eukaryotic genomes Genome Res. 13 2003 2178 2189
    • (2003) Genome Res. , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, Jr.C.J.2    Roos, D.S.3
  • 27
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adaptor sequences from high-throughput sequencing reads
    • M. Martin Cutadapt removes adaptor sequences from high-throughput sequencing reads EMBnet Journal 17 2011 10 12
    • (2011) EMBnet Journal , vol.17 , pp. 10-12
    • Martin, M.1
  • 28
    • 79951580942 scopus 로고    scopus 로고
    • Increase in invasive Streptococcus pneumoniae infections in children with sickle cell disease since pneumococcal conjugate vaccine licensure
    • T.L. McCavit, C.T. Quinn, C. Techasaensiri, and Z.R. Rogers Increase in invasive Streptococcus pneumoniae infections in children with sickle cell disease since pneumococcal conjugate vaccine licensure J. Pediatr. 158 2011 505 507
    • (2011) J. Pediatr. , vol.158 , pp. 505-507
    • McCavit, T.L.1    Quinn, C.T.2    Techasaensiri, C.3    Rogers, Z.R.4
  • 29
    • 33846846727 scopus 로고    scopus 로고
    • Hypersusceptibility to invasive pneumococcal infection in experimental sickle cell disease involves platelet-activating factor receptor
    • M.L. Miller, G. Gao, T. Pestina, D. Persons, and E. Tuomanen Hypersusceptibility to invasive pneumococcal infection in experimental sickle cell disease involves platelet-activating factor receptor J. Infect. Dis. 195 2007 581 584
    • (2007) J. Infect. Dis. , vol.195 , pp. 581-584
    • Miller, M.L.1    Gao, G.2    Pestina, T.3    Persons, D.4    Tuomanen, E.5
  • 30
    • 56349122122 scopus 로고    scopus 로고
    • Pilus operon evolution in Streptococcus pneumoniae is driven by positive selection and recombination
    • A. Muzzi, M. Moschioni, A. Covacci, R. Rappuoli, and C. Donati Pilus operon evolution in Streptococcus pneumoniae is driven by positive selection and recombination PLoS ONE 3 2008 e3660
    • (2008) PLoS ONE , vol.3 , pp. 3660
    • Muzzi, A.1    Moschioni, M.2    Covacci, A.3    Rappuoli, R.4    Donati, C.5
  • 31
    • 78649462028 scopus 로고    scopus 로고
    • Altered plasma hexose sugar metabolism in sickle cell anaemia
    • C.G. Osuagwu, and C.U. Mbeyi Altered plasma hexose sugar metabolism in sickle cell anaemia Afr. J. Biochem. 1 2007 37 40
    • (2007) Afr. J. Biochem. , vol.1 , pp. 37-40
    • Osuagwu, C.G.1    Mbeyi, C.U.2
  • 32
    • 0032611609 scopus 로고    scopus 로고
    • Infections and immunizations of children with sickle cell disease
    • G.D. Overturf Infections and immunizations of children with sickle cell disease Adv. Pediatr. Infect. Dis. 14 1999 191 218
    • (1999) Adv. Pediatr. Infect. Dis. , vol.14 , pp. 191-218
    • Overturf, G.D.1
  • 33
    • 24044489248 scopus 로고    scopus 로고
    • Red blood cell lactate transport in sickle disease and sickle cell trait
    • R.E. Pattillo, and L.B. Gladden Red blood cell lactate transport in sickle disease and sickle cell trait J. Appl. Physiol. 99 2005 822 827
    • (2005) J. Appl. Physiol. , vol.99 , pp. 822-827
    • Pattillo, R.E.1    Gladden, L.B.2
  • 36
    • 0017182439 scopus 로고
    • Hyponatremia in sickle cell disease. A renal salt-losing state
    • E.G. Radel, J.A. Kochen, and L. Finberg Hyponatremia in sickle cell disease. A renal salt-losing state J. Pediatr. 88 1976 800 805
    • (1976) J. Pediatr. , vol.88 , pp. 800-805
    • Radel, E.G.1    Kochen, J.A.2    Finberg, L.3
  • 37
    • 78049408075 scopus 로고    scopus 로고
    • Infections of people with complement deficiencies and patients who have undergone splenectomy
    • S. Ram, L.A. Lewis, and P.A. Rice Infections of people with complement deficiencies and patients who have undergone splenectomy Clin. Microbiol. Rev. 23 2010 740 780
    • (2010) Clin. Microbiol. Rev. , vol.23 , pp. 740-780
    • Ram, S.1    Lewis, L.A.2    Rice, P.A.3
  • 38
    • 76649105064 scopus 로고    scopus 로고
    • Statins protect against fulminant pneumococcal infection and cytolysin toxicity in a mouse model of sickle cell disease
    • J.W. Rosch, A.R. Boyd, E. Hinojosa, T. Pestina, Y. Hu, D.A. Persons, C.J. Orihuela, and E.I. Tuomanen Statins protect against fulminant pneumococcal infection and cytolysin toxicity in a mouse model of sickle cell disease J. Clin. Invest. 120 2010 627 635
    • (2010) J. Clin. Invest. , vol.120 , pp. 627-635
    • Rosch, J.W.1    Boyd, A.R.2    Hinojosa, E.3    Pestina, T.4    Hu, Y.5    Persons, D.A.6    Orihuela, C.J.7    Tuomanen, E.I.8
  • 39
    • 84868150670 scopus 로고    scopus 로고
    • Streptococcus pneumoniae R6 interspecies transformation: Genetic analysis of penicillin resistance determinants and genome-wide recombination events
    • J. Sauerbier, P. Maurer, M. Rieger, and R. Hakenbeck Streptococcus pneumoniae R6 interspecies transformation: genetic analysis of penicillin resistance determinants and genome-wide recombination events Mol. Microbiol. 86 2012 692 706
    • (2012) Mol. Microbiol. , vol.86 , pp. 692-706
    • Sauerbier, J.1    Maurer, P.2    Rieger, M.3    Hakenbeck, R.4
  • 41
  • 44
    • 84862239242 scopus 로고    scopus 로고
    • A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
    • M.T. Swain, I.J. Tsai, S.A. Assefa, C. Newbold, M. Berriman, and T.D. Otto A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs Nat. Protoc. 7 2012 1260 1284
    • (2012) Nat. Protoc. , vol.7 , pp. 1260-1284
    • Swain, M.T.1    Tsai, I.J.2    Assefa, S.A.3    Newbold, C.4    Berriman, M.5    Otto, T.D.6
  • 45
    • 84901050086 scopus 로고    scopus 로고
    • Emergence of hypervirulent mutants resistant to early clearance during systemic serotype 1 pneumococcal infection in mouse and man
    • 10.1093/infdis/jiu03 Published online January 16, 2014
    • A. Syk, M. Norman, J. Fernebro, M. Gallotta, S. Farmand, A. Sandgren, S. Normark, and B. Henriques-Normark Emergence of hypervirulent mutants resistant to early clearance during systemic serotype 1 pneumococcal infection in mouse and man J. Infect. Dis. 2014 10.1093/infdis/jiu03 Published online January 16, 2014
    • (2014) J. Infect. Dis.
    • Syk, A.1    Norman, M.2    Fernebro, J.3    Gallotta, M.4    Farmand, S.5    Sandgren, A.6    Normark, S.7    Henriques-Normark, B.8
  • 46
    • 0028040030 scopus 로고
    • Defective regulation of complement by the sickle erythrocyte: Evidence for a defect in control of membrane attack complex formation
    • S.T. Test, and V.S. Woolworth Defective regulation of complement by the sickle erythrocyte: evidence for a defect in control of membrane attack complex formation Blood 83 1994 842 852
    • (1994) Blood , vol.83 , pp. 842-852
    • Test, S.T.1    Woolworth, V.S.2
  • 47
    • 79952276542 scopus 로고    scopus 로고
    • Genome-wide fitness and genetic interactions determined by Tn-seq, a high-throughput massively parallel sequencing method for microorganisms
    • Unit1E3
    • T. van Opijnen, and A. Camilli Genome-wide fitness and genetic interactions determined by Tn-seq, a high-throughput massively parallel sequencing method for microorganisms Curr. Protoc. Microbiol. Chapter 1 2010 Unit1E3
    • (2010) Curr. Protoc. Microbiol. , vol.1 CHAPTER
    • Van Opijnen, T.1    Camilli, A.2
  • 48
    • 84870479250 scopus 로고    scopus 로고
    • A fine scale phenotype-genotype virulence map of a bacterial pathogen
    • T. van Opijnen, and A. Camilli A fine scale phenotype-genotype virulence map of a bacterial pathogen Genome Res. 22 2012 2541 2551
    • (2012) Genome Res. , vol.22 , pp. 2541-2551
    • Van Opijnen, T.1    Camilli, A.2
  • 49
    • 84879413726 scopus 로고    scopus 로고
    • Transposon insertion sequencing: A new tool for systems-level analysis of microorganisms
    • T. van Opijnen, and A. Camilli Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms Nat. Rev. Microbiol. 11 2013 435 442
    • (2013) Nat. Rev. Microbiol. , vol.11 , pp. 435-442
    • Van Opijnen, T.1    Camilli, A.2
  • 50
    • 70349611730 scopus 로고    scopus 로고
    • Tn-seq: High-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
    • T. van Opijnen, K.L. Bodi, and A. Camilli Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms Nat. Methods 6 2009 767 772
    • (2009) Nat. Methods , vol.6 , pp. 767-772
    • Van Opijnen, T.1    Bodi, K.L.2    Camilli, A.3
  • 52
    • 11144314679 scopus 로고    scopus 로고
    • PiuA and PiaA, iron uptake lipoproteins of Streptococcus pneumoniae, elicit serotype independent antibody responses following human pneumococcal septicaemia
    • R.H. Whalan, S.G. Funnell, L.D. Bowler, M.J. Hudson, A. Robinson, and C.G. Dowson PiuA and PiaA, iron uptake lipoproteins of Streptococcus pneumoniae, elicit serotype independent antibody responses following human pneumococcal septicaemia FEMS Immunol. Med. Microbiol. 43 2005 73 80
    • (2005) FEMS Immunol. Med. Microbiol. , vol.43 , pp. 73-80
    • Whalan, R.H.1    Funnell, S.G.2    Bowler, L.D.3    Hudson, M.J.4    Robinson, A.5    Dowson, C.G.6
  • 55
  • 56
    • 0023851448 scopus 로고
    • Decreased erythrocyte nicotinamide adenine dinucleotide redox potential and abnormal pyridine nucleotide content in sickle cell disease
    • C.R. Zerez, N.A. Lachant, S.J. Lee, and K.R. Tanaka Decreased erythrocyte nicotinamide adenine dinucleotide redox potential and abnormal pyridine nucleotide content in sickle cell disease Blood 71 1988 512 515
    • (1988) Blood , vol.71 , pp. 512-515
    • Zerez, C.R.1    Lachant, N.A.2    Lee, S.J.3    Tanaka, K.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.