-
1
-
-
0030726828
-
Laser-assisted preparation of single cells from stained histological slides for gene analysis
-
doi: 10.1007/s004180050185
-
Becker, I., Becker, K. F., Röhrl, M. H., and Höfler, H. (1997). Laser-assisted preparation of single cells from stained histological slides for gene analysis. Histochem. Cell Biol. 108, 447-451. doi: 10.1007/s004180050185
-
(1997)
Histochem. Cell Biol.
, vol.108
, pp. 447-451
-
-
Becker, I.1
Becker, K.F.2
Röhrl, M.H.3
Höfler, H.4
-
2
-
-
78650096170
-
Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes
-
doi: 10.1186/1471-2229-10-280
-
Chen, C., Farmer, A. D., Langley, R. J., Mudge, J., Crow, J. A., May, G. D., et al. (2010). Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes. BMC Plant Biol. 10:280. doi: 10.1186/1471-2229-10-280
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 280
-
-
Chen, C.1
Farmer, A.D.2
Langley, R.J.3
Mudge, J.4
Crow, J.A.5
May, G.D.6
-
3
-
-
84884645267
-
Analyzing the meiotic transcriptome using isolated meiocytes of Arabidopsis thaliana
-
In, eds S. Pawlowski, W. Grelon, and M. Armstrong (New York, NY: Humana Press)
-
Chen, C., and Retzel, E. F. (2013). "Analyzing the meiotic transcriptome using isolated meiocytes of Arabidopsis thaliana, " in Plant Meiosis: Methods and Protocols, eds S. Pawlowski, W. Grelon, and M. Armstrong (New York, NY: Humana Press), 203-213.
-
(2013)
Plant Meiosis: Methods and Protocols
, pp. 203-213
-
-
Chen, C.1
Retzel, E.F.2
-
4
-
-
84887106752
-
Arabidopsis meiotic crossover hot spots overlap with H2A. Z nucleosomes at gene promoters
-
doi: 10.1038/ng.2766
-
Choi, K., Zhao, X., Kelly, K. A., Venn, O., Higgins, J. D., Yelina, N. E., et al. (2013). Arabidopsis meiotic crossover hot spots overlap with H2A. Z nucleosomes at gene promoters. Nat. Genet. 45, 1327-1336. doi: 10.1038/ng.2766
-
(2013)
Nat. Genet.
, vol.45
, pp. 1327-1336
-
-
Choi, K.1
Zhao, X.2
Kelly, K.A.3
Venn, O.4
Higgins, J.D.5
Yelina, N.E.6
-
5
-
-
78651081445
-
The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana
-
doi: 10.1038/nprot.2010.175
-
Deal, R. B., and Henikoff, S. (2011). The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana. Nat. Protoc. 6, 56-68. doi: 10.1038/nprot.2010.175
-
(2011)
Nat. Protoc.
, vol.6
, pp. 56-68
-
-
Deal, R.B.1
Henikoff, S.2
-
6
-
-
84867345057
-
CHANCE: Comprehensive software for quality control and validation of ChIP-seq data
-
doi: 10.1186/gb-2012-13-10-r98
-
Diaz, A., Nellore, A., and Song, J. S. (2012). CHANCE: comprehensive software for quality control and validation of ChIP-seq data. Genome Biol. 13:R98. doi: 10.1186/gb-2012-13-10-r98
-
(2012)
Genome Biol.
, vol.13
-
-
Diaz, A.1
Nellore, A.2
Song, J.S.3
-
7
-
-
84896316569
-
Comparative transcriptomics of early meiosis in Arabidopsis and maize
-
doi: 10.1016/j.jgg.2013.11.007. (in press)
-
Dukowic-Schulze, S., Harris, A., Li, J., Sundararajan, A., Mudge, J., Retzel, E. F., et al. (2013). Comparative transcriptomics of early meiosis in Arabidopsis and maize. J. Genet. Gen. doi: 10.1016/j.jgg.2013.11.007. (in press).
-
(2013)
J. Genet. Gen.
-
-
Dukowic-Schulze, S.1
Harris, A.2
Li, J.3
Sundararajan, A.4
Mudge, J.5
Retzel, E.F.6
-
8
-
-
79955098368
-
Methylation and demethylation of the Arabidopsis genome
-
doi: 10.1016/j.pbi.2010.11.004
-
Furner, I. J., and Matzke, M. (2011). Methylation and demethylation of the Arabidopsis genome. Curr. Opin. Plant Biol. 14, 137-141. doi: 10.1016/j.pbi.2010.11.004
-
(2011)
Curr. Opin. Plant Biol.
, vol.14
, pp. 137-141
-
-
Furner, I.J.1
Matzke, M.2
-
9
-
-
84875971371
-
CHH islands: De novo DNA methylation in near-gene chromatin regulation in maize
-
doi: 10.1101/gr.146985.112
-
Gent, J. I., Ellis, N. A., Guo, L., Harkess, A. E., Yao, Y., Zhang, X., et al. (2013). CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize. Genome Res. 23, 628-637. doi: 10.1101/gr.146985.112
-
(2013)
Genome Res.
, vol.23
, pp. 628-637
-
-
Gent, J.I.1
Ellis, N.A.2
Guo, L.3
Harkess, A.E.4
Yao, Y.5
Zhang, X.6
-
10
-
-
81755183075
-
Genome-wide crossover distribution in Arabidopsis thaliana meiosis reveals sex-specific patterns along chromosomes
-
doi: 10.1371/journal.pgen.1002354
-
Giraut, L., Falque, M., Drouaud, J., Pereira, L., Martin, O. C., and Mézard, C. (2011). Genome-wide crossover distribution in Arabidopsis thaliana meiosis reveals sex-specific patterns along chromosomes. PLoS Genet. 7:e1002354. doi: 10.1371/journal.pgen.1002354
-
(2011)
PLoS Genet.
, vol.7
-
-
Giraut, L.1
Falque, M.2
Drouaud, J.3
Pereira, L.4
Martin, O.C.5
Mézard, C.6
-
11
-
-
84884665947
-
Chromatin immunoprecipitation for studying chromosomal localization of meiotic proteins in maize
-
In, eds W. P. Pawlowski, M. Grelon, and S. Armstrong (New York, NY: Humana Press)
-
He, Y., Sidhu, G., and Pawlowski, W. P. (2013). "Chromatin immunoprecipitation for studying chromosomal localization of meiotic proteins in maize, " in Plant Meiosis Methods in Molecular Biology, eds W. P. Pawlowski, M. Grelon, and S. Armstrong (New York, NY: Humana Press), 191-201.
-
(2013)
Plant Meiosis Methods in Molecular Biology
, pp. 191-201
-
-
He, Y.1
Sidhu, G.2
Pawlowski, W.P.3
-
12
-
-
19044364055
-
Science in culture: Peas without pictures-Gregor Mendel and the mathematical birth of modern genetics
-
doi: 10.1038/417490a
-
Kemp, M. (2002). Science in culture: peas without pictures-Gregor Mendel and the mathematical birth of modern genetics. Nature 417, 490. doi: 10.1038/417490a
-
(2002)
Nature
, vol.417
, pp. 490
-
-
Kemp, M.1
-
13
-
-
79957868920
-
Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
-
doi: 10.1093/bioinformatics/btr167
-
Krueger, F., and Andrews, S. R. (2011). Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 27, 1571-1572. doi: 10.1093/bioinformatics/btr167
-
(2011)
Bioinformatics
, vol.27
, pp. 1571-1572
-
-
Krueger, F.1
Andrews, S.R.2
-
14
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
doi: 10.1186/gb-2009-10-3-r25
-
Langmead, B., Trapnell, C., Pop, M., and Salzberg, S. L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25. doi: 10.1186/gb-2009-10-3-r25
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
15
-
-
79961035518
-
Gene expression profiling of Arabidopsis meiocytes
-
doi: 10.1111/j.1438-8677.2010.00435.x
-
Libeau, P., Durandet, M., Granier, F., Marquis, C., Berthomé, R., Renou, J. P., et al. (2011). Gene expression profiling of Arabidopsis meiocytes. Plant Biol. 13, 784-793. doi: 10.1111/j.1438-8677.2010.00435.x
-
(2011)
Plant Biol.
, vol.13
, pp. 784-793
-
-
Libeau, P.1
Durandet, M.2
Granier, F.3
Marquis, C.4
Berthomé, R.5
Renou, J.P.6
-
16
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
doi: 10.1093/bioinformatics/btp352
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., et al. (2009). The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078-2079. doi: 10.1093/bioinformatics/btp352
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
17
-
-
0347991996
-
Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites
-
Liu, K., Goodman, M., Muse, S., Smith, J. S., Buckler, E., and Doebley, J. (2003). Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics 165, 2117-2128.
-
(2003)
Genetics
, vol.165
, pp. 2117-2128
-
-
Liu, K.1
Goodman, M.2
Muse, S.3
Smith, J.S.4
Buckler, E.5
Doebley, J.6
-
18
-
-
84864483625
-
RobiNA: A user-friendly, integrated software solution for RNA-Seq-based transcriptomics
-
doi: 10.1093/nar/gks540
-
Lohse, M., Bolger, A. M., Nagel, A., Fernie, A. R., Lunn, J. E., Stitt, M., et al. (2012). RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Res. 40, W622-W627. doi: 10.1093/nar/gks540
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Lohse, M.1
Bolger, A.M.2
Nagel, A.3
Fernie, A.R.4
Lunn, J.E.5
Stitt, M.6
-
19
-
-
84863229351
-
Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis
-
doi: 10.1101/gr.127522.111
-
Lu, P., Han, X., Qi, J., Yang, J., Wijeratne, A. J., Li, T., et al. (2012). Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis. Genome Res. 22, 508-518. doi: 10.1101/gr.127522.111
-
(2012)
Genome Res.
, vol.22
, pp. 508-518
-
-
Lu, P.1
Han, X.2
Qi, J.3
Yang, J.4
Wijeratne, A.J.5
Li, T.6
-
20
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
doi: 10.14806/ej.17.1.200
-
Martin, M. (2011). Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J. 17, 10-12. doi: 10.14806/ej.17.1.200
-
(2011)
EMBnet J.
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
21
-
-
0034893975
-
Barren inflorescence2 regulates axillary meristem development in the maize inflorescence
-
McSteen, P., and Hake, S. (2001). barren inflorescence2 regulates axillary meristem development in the maize inflorescence. Development 128, 2881-2891.
-
(2001)
Development
, vol.128
, pp. 2881-2891
-
-
McSteen, P.1
Hake, S.2
-
22
-
-
84859620561
-
Deficiency in DNA methylation increases meiotic crossover rates in euchromatic but not in heterochromatic regions in Arabidopsis
-
doi: 10.1073/pnas.1120742109
-
Melamed-Bessudo, C., and Levy, A. A. (2012). Deficiency in DNA methylation increases meiotic crossover rates in euchromatic but not in heterochromatic regions in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 109, 981-988. doi: 10.1073/pnas.1120742109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 981-988
-
-
Melamed-Bessudo, C.1
Levy, A.A.2
-
23
-
-
0040115248
-
-
Brünn: Verhandlungen des naturforschenden Vereines
-
Mendel, G. (1865). Versuche Über Pflanzen-Hybriden. Brünn: Verhandlungen des naturforschenden Vereines.
-
(1865)
Versuche Über Pflanzen-Hybriden
-
-
Mendel, G.1
-
24
-
-
44349164569
-
Meiosis in plants: Ten years of gene discovery
-
doi: 10.1159/000121077
-
Mercier, R., and Grelon, M. (2008). Meiosis in plants: ten years of gene discovery. Cytogenet. Genome Res. 120, 281-290. doi: 10.1159/000121077
-
(2008)
Cytogenet. Genome Res.
, vol.120
, pp. 281-290
-
-
Mercier, R.1
Grelon, M.2
-
25
-
-
65349155347
-
Management of high-throughput DNA sequencing projects: Alpheus
-
doi: 10.4172/jcsb.1000013
-
Miller, N. A., Kingsmore, S. F., Farmer, A., Langley, R. J., Mudge, J., Crow, J. A., et al. (2008). Management of high-throughput DNA sequencing projects: Alpheus. J. Comput. Sci. Syst. Biol. 1, 132. doi: 10.4172/jcsb.1000013
-
(2008)
J. Comput. Sci. Syst. Biol.
, vol.1
, pp. 132
-
-
Miller, N.A.1
Kingsmore, S.F.2
Farmer, A.3
Langley, R.J.4
Mudge, J.5
Crow, J.A.6
-
26
-
-
84859570036
-
Loss of DNA methylation affects the recombination landscape in Arabidopsis
-
doi: 10.1073/pnas.1120841109
-
Mirouze, M., Lieberman-Lazarovich, M., Aversano, R., Bucher, E., Nicolet, J., Reinders, J., et al. (2012). Loss of DNA methylation affects the recombination landscape in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1120841109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
-
-
Mirouze, M.1
Lieberman-Lazarovich, M.2
Aversano, R.3
Bucher, E.4
Nicolet, J.5
Reinders, J.6
-
27
-
-
84900991013
-
-
Available online at
-
Pickle, L. (2010). MAGnify ChIP Kit Plant Collection Protocol (Beta Protocol). Available online at: http://www.lifetechnologies.com/us/en/home/life-science/epigenetics-noncoding-rna-research/chromatin-remodeling/chromatin-immunoprecipitation-chip/magnify-chip.html
-
(2010)
MAGnify ChIP Kit Plant Collection Protocol (Beta Protocol)
-
-
Pickle, L.1
-
28
-
-
0001968407
-
The cytogenetics of maize
-
In, ed G. F. Sprague (New York, NY: Academic Press)
-
Rhoades, M. M. (1955). "The cytogenetics of maize, " in Corn and Corn Improvement, ed G. F. Sprague (New York, NY: Academic Press), 123-219.
-
(1955)
Corn and Corn Improvement
, pp. 123-219
-
-
Rhoades, M.M.1
-
29
-
-
0004253184
-
-
2nd Edn, Ames, IA: Iowa State College Press Available online at
-
Sass, J. E. (1951). Botanical Microtechnique, 2nd Edn. Ames, IA: Iowa State College Press Available online at: http://www.biodiversitylibrary.org/bibliography/5706
-
(1951)
Botanical Microtechnique
-
-
Sass, J.E.1
-
30
-
-
84859134191
-
Analysis of plant germline development by high-throughput RNA profiling: Technical advances and new insights
-
doi: 10.1111/j.1365-313X.2012.04897.x
-
Schmidt, A., Schmid, M. W., and Grossniklaus, U. (2012). Analysis of plant germline development by high-throughput RNA profiling: technical advances and new insights. Plant J. 70, 18-29. doi: 10.1111/j.1365-313X.2012.04897.x
-
(2012)
Plant J.
, vol.70
, pp. 18-29
-
-
Schmidt, A.1
Schmid, M.W.2
Grossniklaus, U.3
-
31
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
doi: 10.1126/science.1178534
-
Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., et al. (2009). The B73 maize genome: complexity, diversity, and dynamics. Science 326, 1112-1115. doi: 10.1126/science.1178534
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
-
32
-
-
63849094762
-
HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination
-
doi: 10.1101/gr.086181.108
-
Sigurdsson, M. I., Smith, A. V., Bjornsson, H. T., and Jonsson, J. J. (2009). HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination. Genome Res. 19, 581-589. doi: 10.1101/gr.086181.108
-
(2009)
Genome Res.
, vol.19
, pp. 581-589
-
-
Sigurdsson, M.I.1
Smith, A.V.2
Bjornsson, H.T.3
Jonsson, J.J.4
-
33
-
-
77951820899
-
Fast and SNP-tolerant detection of complex variants and splicing in short reads
-
doi: 10.1093/bioinformatics/btq057
-
Wu, T. D., and Nacu, S. (2010). Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 26, 873-881. doi: 10.1093/bioinformatics/btq057
-
(2010)
Bioinformatics
, vol.26
, pp. 873-881
-
-
Wu, T.D.1
Nacu, S.2
-
34
-
-
79551643605
-
The transcriptome landscape of Arabidopsis male meiocytes from high-throughput sequencing: The complexity and evolution of the meiotic process
-
doi: 10.1111/j.1365-313X.2010.04439.x
-
Yang, H., Lu, P., Wang, Y., and Ma, H. (2011). The transcriptome landscape of Arabidopsis male meiocytes from high-throughput sequencing: the complexity and evolution of the meiotic process. Plant J. 65, 503-516. doi: 10.1111/j.1365-313X.2010.04439.x
-
(2011)
Plant J.
, vol.65
, pp. 503-516
-
-
Yang, H.1
Lu, P.2
Wang, Y.3
Ma, H.4
|