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Volumn 5 APR, Issue , 2014, Pages

Epigenetic features in the oyster Crassostrea gigas suggestive of functionally relevant promoter DNA methylation in invertebrates

Author keywords

DNA methylation; Evolution; Functional epigenomics; Invertebrates; Lophotrochozoans; Oyster; Promoter; Transcription

Indexed keywords

DNA;

EID: 84901021667     PISSN: None     EISSN: 1664042X     Source Type: Journal    
DOI: 10.3389/fphys.2014.00129     Document Type: Article
Times cited : (51)

References (70)
  • 1
    • 0042329754 scopus 로고    scopus 로고
    • Structure, function and evolution of CpG island promoters
    • doi: 10.1007/s00018-003-3088-6
    • Antequera, F. (2003). Structure, function and evolution of CpG island promoters. Cell. Mol. Life Sci. 60, 1647-1658. doi: 10.1007/s00018-003-3088-6
    • (2003) Cell. Mol. Life Sci. , vol.60 , pp. 1647-1658
    • Antequera, F.1
  • 2
    • 0022432391 scopus 로고
    • Developmental modulation of DNA methylation in the fungus Phycomyces blakesleeanus
    • doi: 10.1093/nar/13.18.6545
    • Antequera, F., Tamame, M., Vilanueva, J. R., and Santos, T. (1985). Developmental modulation of DNA methylation in the fungus Phycomyces blakesleeanus. Nucleic Acids Res. 13, 6545-6558. doi: 10.1093/nar/13.18.6545
    • (1985) Nucleic Acids Res. , vol.13 , pp. 6545-6558
    • Antequera, F.1    Tamame, M.2    Vilanueva, J.R.3    Santos, T.4
  • 3
    • 84875424617 scopus 로고    scopus 로고
    • Emerging roles for chromatin as a signal integration and storage platform
    • doi: 10.1038/nrm3545
    • Badeaux, A. I., and Shi, Y. (2013). Emerging roles for chromatin as a signal integration and storage platform. Nat. Rev. Mol. Cell Biol. 14, 211-224. doi: 10.1038/nrm3545
    • (2013) Nat. Rev. Mol. Cell Biol. , vol.14 , pp. 211-224
    • Badeaux, A.I.1    Shi, Y.2
  • 4
    • 64349091471 scopus 로고    scopus 로고
    • Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
    • doi: 10.1038/nbt.1533
    • Ball, M. P., Li, J. B., Gao, Y., Lee, J., Leproust, E. M., Park, I., et al. (2009). Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat. Biotechnol. 27, 361-369. doi: 10.1038/nbt.1533
    • (2009) Nat. Biotechnol. , vol.27 , pp. 361-369
    • Ball, M.P.1    Li, J.B.2    Gao, Y.3    Lee, J.4    Leproust, E.M.5    Park, I.6
  • 5
    • 0026653420 scopus 로고
    • The Essentials of DNA methylation Minireview
    • doi: 10.1016/0092-8674(92)90526-I
    • Bird, A. (1992). The Essentials of DNA methylation Minireview. Cell 70, 5-8. doi: 10.1016/0092-8674(92)90526-I
    • (1992) Cell , vol.70 , pp. 5-8
    • Bird, A.1
  • 6
    • 0019322245 scopus 로고
    • DNA methylation and the frequency of CpG in animal DNA
    • doi: 10.1093/nar/8.7.1499
    • Bird, A. P. (1980). DNA methylation and the frequency of CpG in animal DNA. Nucleic Acid Res. 8, 1499-1504. doi: 10.1093/nar/8.7.1499
    • (1980) Nucleic Acid Res. , vol.8 , pp. 1499-1504
    • Bird, A.P.1
  • 7
    • 84867397446 scopus 로고    scopus 로고
    • Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator
    • doi: 10.1016/j.cub.2012.07.042
    • Bonasio, R., Li, Q., Lian, J., Mutti, N. S., Jin, L., Zhao, H., et al. (2012). Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator. Curr. Biol. 22, 1755-1764. doi: 10.1016/j.cub.2012.07.042
    • (2012) Curr. Biol. , vol.22 , pp. 1755-1764
    • Bonasio, R.1    Li, Q.2    Lian, J.3    Mutti, N.S.4    Jin, L.5    Zhao, H.6
  • 8
    • 67349190247 scopus 로고    scopus 로고
    • Linking DNA methylation and histone modification: patterns and paradigms
    • doi: 10.1038/nrg2540
    • Cedar, H., and Bergman, Y. (2009). Linking DNA methylation and histone modification: patterns and paradigms. Nat. Rev. Genet. 10, 295-304. doi: 10.1038/nrg2540
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 295-304
    • Cedar, H.1    Bergman, Y.2
  • 9
    • 84893120470 scopus 로고    scopus 로고
    • DNA methylation is associated with an increased level of conservation at nondegenerate nucleotides in mammals
    • doi: 10.1093/molbev/mst208
    • Chuang, T. J., and Chen, F. C. (2014). DNA methylation is associated with an increased level of conservation at nondegenerate nucleotides in mammals. Mol. Biol. Evol. 31, 387-396. doi: 10.1093/molbev/mst208
    • (2014) Mol. Biol. Evol. , vol.31 , pp. 387-396
    • Chuang, T.J.1    Chen, F.C.2
  • 10
    • 40749109894 scopus 로고    scopus 로고
    • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    • doi: 10.1038/nature06745
    • Cokus, S. J., Feng, S., Zhang, X., Chen, Z., Merriman, B., Haudenschild, C. D., et al. (2008). Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452, 215-219. doi: 10.1038/nature06745
    • (2008) Nature , vol.452 , pp. 215-219
    • Cokus, S.J.1    Feng, S.2    Zhang, X.3    Chen, Z.4    Merriman, B.5    Haudenschild, C.D.6
  • 11
    • 71849115781 scopus 로고    scopus 로고
    • Epigenetic regulation of the bacterial cell cycle
    • doi: 10.1016/j.mib.2009.08.005
    • Collier, J. (2009). Epigenetic regulation of the bacterial cell cycle. Curr. Opin. Microbiol. 12, 722-729. doi: 10.1016/j.mib.2009.08.005
    • (2009) Curr. Opin. Microbiol. , vol.12 , pp. 722-729
    • Collier, J.1
  • 12
    • 0024342297 scopus 로고
    • Cytosine methylation and the fate of CpG dinucleotides in vertebrate genomes
    • doi: 10.1007/BF00286715
    • Cooper, D. N., and Krawczak, M. (1989). Cytosine methylation and the fate of CpG dinucleotides in vertebrate genomes. Hum. Genet. 83, 181-188. doi: 10.1007/BF00286715
    • (1989) Hum. Genet. , vol.83 , pp. 181-188
    • Cooper, D.N.1    Krawczak, M.2
  • 13
    • 79956330964 scopus 로고    scopus 로고
    • CpG islands and the regulation of transcription
    • doi: 10.1101/gad.2037511
    • Deaton, A. M., Bird, A., and Deaton, M. (2011). CpG islands and the regulation of transcription. Genes Dev. 25, 1010-1022. doi: 10.1101/gad.2037511
    • (2011) Genes Dev. , vol.25 , pp. 1010-1022
    • Deaton, A.M.1    Bird, A.2    Deaton, M.3
  • 14
    • 50549163302 scopus 로고
    • Distribution of 5-methylcytosine in pyrimidine sequences of deoxyribonucleic acids
    • doi: 10.1016/0006-3002(62)90909-5
    • Doskocil, J., and Šorm, F. (1962). Distribution of 5-methylcytosine in pyrimidine sequences of deoxyribonucleic acids. Biochim. Biophys. Acta 55, 953-959. doi: 10.1016/0006-3002(62)90909-5
    • (1962) Biochim. Biophys. Acta , vol.55 , pp. 953-959
    • Doskocil, J.1    Šorm, F.2
  • 15
    • 33745727065 scopus 로고    scopus 로고
    • Histone modification and the control of heterochromatic gene silencing in Drosophila
    • doi: 10.1007/s10577-006-1066-1
    • Ebert, A., Lein, S., Schotta, G., and Reuter, G. (2006). Histone modification and the control of heterochromatic gene silencing in Drosophila. Chromosome Res. 14, 377-392. doi: 10.1007/s10577-006-1066-1
    • (2006) Chromosome Res. , vol.14 , pp. 377-392
    • Ebert, A.1    Lein, S.2    Schotta, G.3    Reuter, G.4
  • 16
    • 67650488920 scopus 로고    scopus 로고
    • DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera
    • doi: 10.1073/pnas.0900301106
    • Elango, N., Hunt, B. G., Goodisman, M. A. D., and Yi, S. V. (2009). DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera. Proc. Natl. Acad. Sci. U.S.A. 106, 11206-11211. doi: 10.1073/pnas.0900301106
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 11206-11211
    • Elango, N.1    Hunt, B.G.2    Goodisman, M.A.D.3    Yi, S.V.4
  • 17
    • 40149097494 scopus 로고    scopus 로고
    • Mutations of different molecular origins exhibit contrasting patterns of regional substitution rate variation
    • doi: 10.1371/journal.pcbi.1000015
    • Elango, N., Kim, S.-H., Vigoda, E., and Yi, S. V. (2008). Mutations of different molecular origins exhibit contrasting patterns of regional substitution rate variation. PLoS Comput. Biol. 4:e1000015. doi: 10.1371/journal.pcbi.1000015
    • (2008) PLoS Comput. Biol. , vol.4
    • Elango, N.1    Kim, S.-H.2    Vigoda, E.3    Yi, S.V.4
  • 18
    • 47649091157 scopus 로고    scopus 로고
    • DNA methylation and structural and functional bimodality of vertebrate promoters
    • doi: 10.1093/molbev/msn110
    • Elango, N., and Yi, S. V. (2008). DNA methylation and structural and functional bimodality of vertebrate promoters. Mol. Biol. Evol. 25, 1602-1608. doi: 10.1093/molbev/msn110
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1602-1608
    • Elango, N.1    Yi, S.V.2
  • 19
    • 84893770667 scopus 로고    scopus 로고
    • The Jumonji gene family in Crassostrea gigas suggests evolutionary conservation of Jmj-C histone demethylases orthologues in the oyster gametogenesis and development
    • doi: 10.1016/j.gene.2013.12.016
    • Fellous, A., Favrel, P., Guo, X., and Riviere, G. (2014). The Jumonji gene family in Crassostrea gigas suggests evolutionary conservation of Jmj-C histone demethylases orthologues in the oyster gametogenesis and development. Gene 538, 164-175. doi: 10.1016/j.gene.2013.12.016
    • (2014) Gene , vol.538 , pp. 164-175
    • Fellous, A.1    Favrel, P.2    Guo, X.3    Riviere, G.4
  • 20
    • 77952734605 scopus 로고    scopus 로고
    • Conservation and divergence of methylation patterning in plants and animals
    • doi: 10.1073/pnas.1002720107
    • Feng, S., Cokus, S. J., Zhang, X., Chen, P., Bostick, M., and Goll, M. G. (2010). Conservation and divergence of methylation patterning in plants and animals. Proc. Natl. Acad. Sci. U.S.A. 107, 8689-8694. doi: 10.1073/pnas.1002720107
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 8689-8694
    • Feng, S.1    Cokus, S.J.2    Zhang, X.3    Chen, P.4    Bostick, M.5    Goll, M.G.6
  • 21
    • 84866145900 scopus 로고    scopus 로고
    • Genome-wide association between DNA methylation and alternative splicing in an invertebrate
    • doi: 10.1186/1471-2164-13-480
    • Flores, K., Wolschin, F., Corneveaux, J. J., Allen, A. N., Huentelman, M. J., and Amdam, G. V. (2012). Genome-wide association between DNA methylation and alternative splicing in an invertebrate. BMC Genomics 13:480. doi: 10.1186/1471-2164-13-480
    • (2012) BMC Genomics , vol.13 , pp. 480
    • Flores, K.1    Wolschin, F.2    Corneveaux, J.J.3    Allen, A.N.4    Huentelman, M.J.5    Amdam, G.V.6
  • 22
    • 84878472376 scopus 로고    scopus 로고
    • 5-methyl-cytosine and 5-hydroxy-methyl-cytosine in the genome of Biomphalaria glabrata, a snail intermediate host of Schistosoma mansoni
    • doi: 10.1186/1756-3305-6-167
    • Fneich, S., Dheilly, N., Adema, C., Rognon, A., Reichelt, M., Bulla, J., et al. (2013). 5-methyl-cytosine and 5-hydroxy-methyl-cytosine in the genome of Biomphalaria glabrata, a snail intermediate host of Schistosoma mansoni. Parasit. Vectors 6, 167-178. doi: 10.1186/1756-3305-6-167
    • (2013) Parasit. Vectors , vol.6 , pp. 167-178
    • Fneich, S.1    Dheilly, N.2    Adema, C.3    Rognon, A.4    Reichelt, M.5    Bulla, J.6
  • 23
    • 84872149680 scopus 로고    scopus 로고
    • Epigenetic mechanisms involved in developmental nutritional programming
    • doi: 10.4239/wjd.v2.i10.164
    • Gabory, A., Attig, L., and Junien, C. (2011). Epigenetic mechanisms involved in developmental nutritional programming. World J. Diabetes 2, 164-175. doi: 10.4239/wjd.v2.i10.164
    • (2011) World J. Diabetes , vol.2 , pp. 164-175
    • Gabory, A.1    Attig, L.2    Junien, C.3
  • 24
    • 84655167020 scopus 로고    scopus 로고
    • The genomic impact of 100 million years of social evolution in seven ant species
    • doi: 10.1016/j.tig.2011.08.005
    • Gadau, J., Helmkampf, M., Nygaard, S., Roux, J., and Simola, D. F. (2012). The genomic impact of 100 million years of social evolution in seven ant species. Trends Genet. 28, 14-21. doi: 10.1016/j.tig.2011.08.005
    • (2012) Trends Genet. , vol.28 , pp. 14-21
    • Gadau, J.1    Helmkampf, M.2    Nygaard, S.3    Roux, J.4    Simola, D.F.5
  • 25
    • 77955974573 scopus 로고    scopus 로고
    • DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas)
    • doi: 10.1186/1471-2164-11-483
    • Gavery, M. R., and Roberts, S. B. (2010). DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas). BMC Genomics 11:483. doi: 10.1186/1471-2164-11-483
    • (2010) BMC Genomics , vol.11 , pp. 483
    • Gavery, M.R.1    Roberts, S.B.2
  • 26
    • 84891525312 scopus 로고    scopus 로고
    • Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc
    • doi: 10.7717/peerj.215
    • Gavery, M. R., and Roberts, S. B. (2013). Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc. PeerJ 1:e215. doi: 10.7717/peerj.215
    • (2013) PeerJ , vol.1
    • Gavery, M.R.1    Roberts, S.B.2
  • 27
    • 84901061109 scopus 로고    scopus 로고
    • A context dependent role for DNA methylation in bivalves
    • doi: 10.1093/bfgp/elt054. [Epub ahead of print].
    • Gavery, M. R., and Roberts, S. B. (2014). A context dependent role for DNA methylation in bivalves. Brief. Funct. Genomics. doi: 10.1093/bfgp/elt054. [Epub ahead of print].
    • (2014) Brief. Funct. Genomics
    • Gavery, M.R.1    Roberts, S.B.2
  • 28
    • 33846432037 scopus 로고    scopus 로고
    • DNA adenine methylation and bacterial pathogenesis
    • doi: 10.1016/j.ijmm.2006.10.002
    • Heusipp, G., Fälker, S., and Schmidt, M. A. (2007). DNA adenine methylation and bacterial pathogenesis. Int. J. Med. Microbiol. 297, 1-7. doi: 10.1016/j.ijmm.2006.10.002
    • (2007) Int. J. Med. Microbiol. , vol.297 , pp. 1-7
    • Heusipp, G.1    Fälker, S.2    Schmidt, M.A.3
  • 29
    • 0028106737 scopus 로고
    • Dependence of transcriptional repression on CpG methylation density
    • Hsieh, C. (1994). Dependence of transcriptional repression on CpG methylation density. Mol. Cell. Biol. 14, 5487-5494.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 5487-5494
    • Hsieh, C.1
  • 30
    • 77958479693 scopus 로고    scopus 로고
    • Functional Conservation of DNA methylation in the Pea Aphid and the Honeybee
    • doi: 10.1093/gbe/evq057
    • Hunt, B. G., Brisson, J. A., Yi, S. V, and Goodisman, M. A. D. (2010). Functional Conservation of DNA methylation in the Pea Aphid and the Honeybee. Genome Biol. Evol. 2, 719-728. doi: 10.1093/gbe/evq057
    • (2010) Genome Biol. Evol. , vol.2 , pp. 719-728
    • Hunt, B.G.1    Brisson, J.A.2    Yi, S.V.3    Goodisman, M.A.D.4
  • 31
    • 84863986133 scopus 로고    scopus 로고
    • Functions of DNA methylation: islands, start sites, gene bodies and beyond
    • doi: 10.1038/nrg3230
    • Jones, P. A. (2012). Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat. Rev. Genet. 13, 484-492. doi: 10.1038/nrg3230
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 484-492
    • Jones, P.A.1
  • 32
    • 77957924029 scopus 로고    scopus 로고
    • Gametogenic stages in triploid oysters Crassostrea gigas: irregular locking of gonial proliferation and subsequent reproductive effort
    • doi: 10.1016/j.jembe.2010.08.030
    • Jouaux, A., Heude-Berthelin, C., Sourdaine, P., Mathieu, M., and Kellner, K. (2010). Gametogenic stages in triploid oysters Crassostrea gigas: irregular locking of gonial proliferation and subsequent reproductive effort. J. Exp. Mar. Biol. Ecol. 395, 162-170. doi: 10.1016/j.jembe.2010.08.030
    • (2010) J. Exp. Mar. Biol. Ecol. , vol.395 , pp. 162-170
    • Jouaux, A.1    Heude-Berthelin, C.2    Sourdaine, P.3    Mathieu, M.4    Kellner, K.5
  • 33
    • 47349104285 scopus 로고    scopus 로고
    • History, chance and adaptation during biological invasion: separating stochastic phenotypic evolution from response to selection
    • doi: 10.1111/j.1461-0248.2008.01188.x
    • Keller, S. R., and Taylor, D. R. (2008). History, chance and adaptation during biological invasion: separating stochastic phenotypic evolution from response to selection. Ecol. Lett. 11, 852-866. doi: 10.1111/j.1461-0248.2008.01188.x
    • (2008) Ecol. Lett. , vol.11 , pp. 852-866
    • Keller, S.R.1    Taylor, D.R.2
  • 34
    • 41349085806 scopus 로고    scopus 로고
    • Nutritional control of reproductive status in honeybees via DNA methylation
    • doi: 10.1126/science.1153069
    • Kucharski, R., Maleszka, J., Foret, S., and Maleszka, R. (2008). Nutritional control of reproductive status in honeybees via DNA methylation. Science 319, 1827-1830. doi: 10.1126/science.1153069
    • (2008) Science , vol.319 , pp. 1827-1830
    • Kucharski, R.1    Maleszka, J.2    Foret, S.3    Maleszka, R.4
  • 35
    • 76349106670 scopus 로고    scopus 로고
    • On the lack of speci fi city of proteins and its consequences for a theory of biological organization
    • doi: 10.1016/j.pbiomolbio.2009.11.002
    • Kupiec, J. (2010). On the lack of speci fi city of proteins and its consequences for a theory of biological organization. Prog. Biophys. Mol. Biol. 102, 45-52. doi: 10.1016/j.pbiomolbio.2009.11.002
    • (2010) Prog. Biophys. Mol. Biol. , vol.102 , pp. 45-52
    • Kupiec, J.1
  • 36
    • 16844385540 scopus 로고    scopus 로고
    • Modeling embryogenesis and cancer: an approach based on an equilibrium between the autostabilization of stochastic gene expression and the interdependence of cells for proliferation
    • doi: 10.1016/j.pbiomolbio.2004.11.004
    • Laforge, B., Guez, D., Martinez, M., and Kupiec, J.-J. (2005). Modeling embryogenesis and cancer: an approach based on an equilibrium between the autostabilization of stochastic gene expression and the interdependence of cells for proliferation. Prog. Biophys. Mol. Biol. 89, 93-120. doi: 10.1016/j.pbiomolbio.2004.11.004
    • (2005) Prog. Biophys. Mol. Biol. , vol.89 , pp. 93-120
    • Laforge, B.1    Guez, D.2    Martinez, M.3    Kupiec, J.-J.4
  • 37
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • doi: 10.1038/nature08514
    • Lister, R., Pelizzola, M., Dowen, R. H., Hawkins, R. D., Hon, G., Tonti-filippini, J., et al. (2009). Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462, 315-322. doi: 10.1038/nature08514
    • (2009) Nature , vol.462 , pp. 315-322
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3    Hawkins, R.D.4    Hon, G.5    Tonti-filippini, J.6
  • 38
    • 78649955848 scopus 로고    scopus 로고
    • The honey bee epigenomes: differential methylation of brain DNA in queens and workers
    • doi: 10.1371/journal.pbio.1000506
    • Lyko, F., Foret, S., Kucharski, R., Wolf, S., Falckenhayn, C., and Maleszka, R. (2010). The honey bee epigenomes: differential methylation of brain DNA in queens and workers. PLoS Biol. 8:e1000506. doi: 10.1371/journal.pbio.1000506
    • (2010) PLoS Biol. , vol.8
    • Lyko, F.1    Foret, S.2    Kucharski, R.3    Wolf, S.4    Falckenhayn, C.5    Maleszka, R.6
  • 39
    • 0034735780 scopus 로고    scopus 로고
    • DNA methylation in Drosophila melanogaster
    • doi: 10.1038/35046205
    • Lyko, F., Ramsahoye, B. H., and Jaenisch, R. (2000). DNA methylation in Drosophila melanogaster. Nature 408, 538-540. doi: 10.1038/35046205
    • (2000) Nature , vol.408 , pp. 538-540
    • Lyko, F.1    Ramsahoye, B.H.2    Jaenisch, R.3
  • 40
    • 32344445831 scopus 로고    scopus 로고
    • Sudden origins: a general mechanism of evolution based on stress protein concentration and rapid environmental change
    • doi: 10.1002/ar.b.20089
    • Maresca, B., and Schwartz, J. H. (2006). Sudden origins: a general mechanism of evolution based on stress protein concentration and rapid environmental change. Anat. Rec. B New Anat. 289, 38-46. doi: 10.1002/ar.b.20089
    • (2006) Anat. Rec. B New Anat. , vol.289 , pp. 38-46
    • Maresca, B.1    Schwartz, J.H.2
  • 41
    • 84887214395 scopus 로고    scopus 로고
    • Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition
    • doi: 10.1038/cr.2013.110
    • Maunakea, A. K., Chepelev, I., Cui, K., and Zhao, K. (2013). Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition. Cell Res. 11, 1-14. doi: 10.1038/cr.2013.110
    • (2013) Cell Res. , vol.11 , pp. 1-14
    • Maunakea, A.K.1    Chepelev, I.2    Cui, K.3    Zhao, K.4
  • 42
    • 77954504873 scopus 로고    scopus 로고
    • Conserved role of intragenic DNA methylation in regulating alternative promoters
    • doi: 10.1038/nature09165
    • Maunakea, A. K., Nagarajan, R. P., Bilenky, M., Ballinger, T. J., Souza, C. D., Fouse, S. D., et al. (2010). Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature 466, 253-257. doi: 10.1038/nature09165
    • (2010) Nature , vol.466 , pp. 253-257
    • Maunakea, A.K.1    Nagarajan, R.P.2    Bilenky, M.3    Ballinger, T.J.4    Souza, C.D.5    Fouse, S.D.6
  • 43
    • 81855206226 scopus 로고    scopus 로고
    • Comparative analyses of DNA methylation and sequence evolution using Nasonia genomes
    • doi: 10.1093/molbev/msr168
    • Park, J., Peng, Z., Zeng, J., Elango, N., Park, T., Wheeler, D., et al. (2011). Comparative analyses of DNA methylation and sequence evolution using Nasonia genomes. Mol. Biol. Evol. 28, 3345-3354. doi: 10.1093/molbev/msr168
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 3345-3354
    • Park, J.1    Peng, Z.2    Zeng, J.3    Elango, N.4    Park, T.5    Wheeler, D.6
  • 44
    • 65349182469 scopus 로고    scopus 로고
    • A GC-rich satellite DNA and karyology of the bivalve mollusk Donax trunculus: a dominance of GC-rich heterochromatin
    • doi: 10.1159/000200089
    • Petrovic, V., Perez-Garcia, C., Pasantes, J., Satovic, E., Prats, E., and Plohl, M. (2009). A GC-rich satellite DNA and karyology of the bivalve mollusk Donax trunculus: a dominance of GC-rich heterochromatin. Cytogenet. Genome Res. 124, 63-71. doi: 10.1159/000200089
    • (2009) Cytogenet. Genome Res. , vol.124 , pp. 63-71
    • Petrovic, V.1    Perez-Garcia, C.2    Pasantes, J.3    Satovic, E.4    Prats, E.5    Plohl, M.6
  • 45
    • 79851485916 scopus 로고    scopus 로고
    • Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level
    • doi: 10.1371/journal.pgen.1001274
    • Rach, E. A., Winter, D. R., Benjamin, A. M., Corcoran, D. L., and Ni, T. (2011). Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level. PLoS Genet. 7:e100127. doi: 10.1371/journal.pgen.1001274
    • (2011) PLoS Genet. , vol.7
    • Rach, E.A.1    Winter, D.R.2    Benjamin, A.M.3    Corcoran, D.L.4    Ni, T.5
  • 46
    • 53549123008 scopus 로고    scopus 로고
    • Nature, nurture, or chance: stochastic gene expression and its consequences
    • doi: 10.1016/j.cell.2008.09.050
    • Raj, A., and van Oudenaarden, A. (2008). Nature, nurture, or chance: stochastic gene expression and its consequences. Cell 135, 216-226. doi: 10.1016/j.cell.2008.09.050
    • (2008) Cell , vol.135 , pp. 216-226
    • Raj, A.1    van Oudenaarden, A.2
  • 47
    • 84860320656 scopus 로고    scopus 로고
    • A role for neuronal piRNAs in the epigenetic control of memory-related synaptic plasticity
    • doi: 10.1016/j.cell.2012.02.057
    • Rajasethupathy, P., Antonov, I., Sheridan, R., Frey, S., Sander, C., Tuschl, T., et al. (2012). A role for neuronal piRNAs in the epigenetic control of memory-related synaptic plasticity. Cell 149, 693-707. doi: 10.1016/j.cell.2012.02.057
    • (2012) Cell , vol.149 , pp. 693-707
    • Rajasethupathy, P.1    Antonov, I.2    Sheridan, R.3    Frey, S.4    Sander, C.5    Tuschl, T.6
  • 48
    • 79954453271 scopus 로고    scopus 로고
    • Epigenetic regulation of somatic angiotensin-converting enzyme by DNA methylation and histone acetylation
    • doi: 10.4161/epi.6.4.14961
    • Rivière, G., Lienhard, D., Andrieu, T., Vieau, D., Frey, B. M., and Frey, F. J. (2011). Epigenetic regulation of somatic angiotensin-converting enzyme by DNA methylation and histone acetylation. Epigenetics 6, 478-489. doi: 10.4161/epi.6.4.14961
    • (2011) Epigenetics , vol.6 , pp. 478-489
    • Rivière, G.1    Lienhard, D.2    Andrieu, T.3    Vieau, D.4    Frey, B.M.5    Frey, F.J.6
  • 49
    • 84885948837 scopus 로고    scopus 로고
    • DNA methylation is crucial for the early development in the Oyster C. gigas
    • doi: 10.1007/s10126-013-9523-2
    • Riviere, G., Wu, G., Fellous, A., Goux, D., Sourdaine, P., and Favrel, P. (2013). DNA methylation is crucial for the early development in the Oyster C. gigas. Mar. Biotechnol. 15, 739-753. doi: 10.1007/s10126-013-9523-2
    • (2013) Mar. Biotechnol. , vol.15 , pp. 739-753
    • Riviere, G.1    Wu, G.2    Fellous, A.3    Goux, D.4    Sourdaine, P.5    Favrel, P.6
  • 50
    • 84866297026 scopus 로고    scopus 로고
    • Is there a relationship between DNA methylation and phenotypic plasticity in invertebrates?
    • doi: 10.3389/fphys.2011.00116
    • Roberts, S. B., and Gavery, M. R. (2012). Is there a relationship between DNA methylation and phenotypic plasticity in invertebrates? Front. Physiol. 2:116. doi: 10.3389/fphys.2011.00116
    • (2012) Front. Physiol. , vol.2 , pp. 116
    • Roberts, S.B.1    Gavery, M.R.2
  • 51
    • 33745502604 scopus 로고    scopus 로고
    • Radiation and the regulatory landscape of neo2-Darwinism
    • doi: 10.1016/j.mrfmmm.2005.09.009
    • Rollo, C. D. (2006). Radiation and the regulatory landscape of neo2-Darwinism. Mutat. Res. 597, 18-31. doi: 10.1016/j.mrfmmm.2005.09.009
    • (2006) Mutat. Res. , vol.597 , pp. 18-31
    • Rollo, C.D.1
  • 52
    • 84864659030 scopus 로고    scopus 로고
    • The evolution of invertebrate gene body methylation
    • doi: 10.1093/molbev/mss062
    • Sarda, S., Zeng, J., Hunt, B. G., and Yi, S. V. (2012). The evolution of invertebrate gene body methylation. Mol. Biol. Evol. 29, 1907-1916. doi: 10.1093/molbev/mss062
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1907-1916
    • Sarda, S.1    Zeng, J.2    Hunt, B.G.3    Yi, S.V.4
  • 53
    • 0023148996 scopus 로고
    • Signal for DNA methylation associated with tandem duplication in Neurospora crassa
    • Selker, E. U., and Stevens, J. N. (1987). Signal for DNA methylation associated with tandem duplication in Neurospora crassa. Mol. Cell. Biol. 7, 1032-1038.
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 1032-1038
    • Selker, E.U.1    Stevens, J.N.2
  • 54
    • 0031593246 scopus 로고    scopus 로고
    • CpG distribution patterns in methylated and non-methylated species
    • doi: 10.1016/S0378-1119(97)00542-8
    • Shimizu, T. S., Takahashi, K., and Tomita, M. (1997). CpG distribution patterns in methylated and non-methylated species. Gene 205, 103-107. doi: 10.1016/S0378-1119(97)00542-8
    • (1997) Gene , vol.205 , pp. 103-107
    • Shimizu, T.S.1    Takahashi, K.2    Tomita, M.3
  • 55
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: provocative insights from epigenomics
    • doi: 10.1038/nrg2341
    • Suzuki, M. M., and Bird, A. (2008). DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet. 9, 465-476. doi: 10.1038/nrg2341
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 56
    • 34248195006 scopus 로고    scopus 로고
    • CpG methylation is targeted to transcription units in an invertebrate genome
    • doi: 10.1101/gr.6163007
    • Suzuki, M. M., Kerr, A. R. W., De Sousa, D., and Bird, A. (2007). CpG methylation is targeted to transcription units in an invertebrate genome. Genome Res. 17, 625-631. doi: 10.1101/gr.6163007
    • (2007) Genome Res. , vol.17 , pp. 625-631
    • Suzuki, M.M.1    Kerr, A.R.W.2    De Sousa, D.3    Bird, A.4
  • 57
    • 84898788183 scopus 로고    scopus 로고
    • Epigenetics in an ecotoxicological context
    • doi: 10.1016/j.mrgentox.2013.08.008. [Epub ahead of print].
    • Vandegehuchte, M. B., and Janssen, C. R. (2013). Epigenetics in an ecotoxicological context. Mutat. Res. doi: 10.1016/j.mrgentox.2013.08.008. [Epub ahead of print].
    • (2013) Mutat. Res
    • Vandegehuchte, M.B.1    Janssen, C.R.2
  • 58
    • 67650732133 scopus 로고    scopus 로고
    • Quantitative DNA-methylation in Daphnia magna and effects of multigeneration Zn exposure
    • doi: 10.1016/j.cbpc.2009.05.014
    • Vandegehuchte, M. B., Lemière, F., and Janssen, C. R. (2009). Quantitative DNA-methylation in Daphnia magna and effects of multigeneration Zn exposure. Comp. Biochem. Physiol. C Toxicol. Pharmacol. 150, 343-348. doi: 10.1016/j.cbpc.2009.05.014
    • (2009) Comp. Biochem. Physiol. C Toxicol. Pharmacol. , vol.150 , pp. 343-348
    • Vandegehuchte, M.B.1    Lemière, F.2    Janssen, C.R.3
  • 59
    • 75349100757 scopus 로고    scopus 로고
    • Direct and transgenerational impact on Daphnia magna of chemicals with a known effect on DNA methylation
    • doi: 10.1016/j.cbpc.2009.11.007
    • Vandegehuchte, M. B., Lemière, F., Vanhaecke, L., Vanden Berghe, W., and Janssen, C. R. (2010). Direct and transgenerational impact on Daphnia magna of chemicals with a known effect on DNA methylation. Comp. Biochem. Physiol. C Toxicol. Pharmacol. 151, 278-285. doi: 10.1016/j.cbpc.2009.11.007
    • (2010) Comp. Biochem. Physiol. C Toxicol. Pharmacol. , vol.151 , pp. 278-285
    • Vandegehuchte, M.B.1    Lemière, F.2    Vanhaecke, L.3    Vanden Berghe, W.4    Janssen, C.R.5
  • 60
    • 84871438899 scopus 로고    scopus 로고
    • CG methylation
    • doi: 10.2217/epi.12.55
    • Vinson, C., and Chatterjee, R. (2012). CG methylation. Future Med. 4, 655-663. doi: 10.2217/epi.12.55
    • (2012) Future Med. , vol.4 , pp. 655-663
    • Vinson, C.1    Chatterjee, R.2
  • 61
    • 77956206812 scopus 로고    scopus 로고
    • A functional DNA methylation system in the pea aphid, Acyrthosiphon pisum
    • doi: 10.1111/j.1365-2583.2009.00974.x
    • Walsh, T. K., Brisson, J. A., Robertson, H. M., Gordon, K., Jobert-Possamai, S., Tagu, D., et al. (2010). A functional DNA methylation system in the pea aphid, Acyrthosiphon pisum. Insect Mol. Biol. 19, 215-228. doi: 10.1111/j.1365-2583.2009.00974.x
    • (2010) Insect Mol. Biol. , vol.19 , pp. 215-228
    • Walsh, T.K.1    Brisson, J.A.2    Robertson, H.M.3    Gordon, K.4    Jobert-Possamai, S.5    Tagu, D.6
  • 62
    • 41549115861 scopus 로고    scopus 로고
    • Two novel elements (CFG1 and PYG1) of Mag lineage of Ty3/Gypsy retrotransposons from Zhikong scallop (Chlamys farreri) and Japanese scallop (Patinopecten yessoensis)
    • doi: 10.1007/s10709-007-9180-3
    • Wang, S., Bao, Z., Hu, X., Shao, M., Zhang, L., and Hu, J. (2008). Two novel elements (CFG1 and PYG1) of Mag lineage of Ty3/Gypsy retrotransposons from Zhikong scallop (Chlamys farreri) and Japanese scallop (Patinopecten yessoensis). Genetica 133, 37-46. doi: 10.1007/s10709-007-9180-3
    • (2008) Genetica , vol.133 , pp. 37-46
    • Wang, S.1    Bao, Z.2    Hu, X.3    Shao, M.4    Zhang, L.5    Hu, J.6
  • 63
    • 84887312009 scopus 로고    scopus 로고
    • Function and evolution of DNA methylation in Nasonia vitripennis
    • doi: 10.1371/journal.pgen.1003872
    • Wang, X., Wheeler, D., Avery, A., Rago, A., Choi, J.-H., Colbourne, J. K., et al. (2013). Function and evolution of DNA methylation in Nasonia vitripennis. PLoS Genet. 9:e1003872. doi: 10.1371/journal.pgen.1003872
    • (2013) PLoS Genet. , vol.9
    • Wang, X.1    Wheeler, D.2    Avery, A.3    Rago, A.4    Choi, J.-H.5    Colbourne, J.K.6
  • 64
    • 77952123054 scopus 로고    scopus 로고
    • Single base-resolution methylome of the silkworm reveals a sparse epigenomic map
    • doi: 10.1038/nbt.1626
    • Xiang, H., Zhu, J., Chen, Q., Dai, F., Li, X., Li, M., et al. (2010). Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Nat. Biotechnol. 28, 516-520. doi: 10.1038/nbt.1626
    • (2010) Nat. Biotechnol. , vol.28 , pp. 516-520
    • Xiang, H.1    Zhu, J.2    Chen, Q.3    Dai, F.4    Li, X.5    Li, M.6
  • 65
    • 0030840954 scopus 로고    scopus 로고
    • Cytosine methylation and the ecology of intragenomic parasites
    • doi: 10.1016/S0168-9525(97)01181-5
    • Yoder, J. A., Walsh, C. P., and Bestor, T. H. (1997). Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13, 335-340. doi: 10.1016/S0168-9525(97)01181-5
    • (1997) Trends Genet. , vol.13 , pp. 335-340
    • Yoder, J.A.1    Walsh, C.P.2    Bestor, T.H.3
  • 66
    • 27144475363 scopus 로고    scopus 로고
    • The role of Dam methylation in phase variation of Haemophilus influenzae genes involved in defence against phage infection
    • doi: 10.1099/mic.0.28184-0
    • Zaleski, P., Wojciechowski, M., and Piekarowicz, A. (2005). The role of Dam methylation in phase variation of Haemophilus influenzae genes involved in defence against phage infection. Microbiology 151, 3361-3369. doi: 10.1099/mic.0.28184-0
    • (2005) Microbiology , vol.151 , pp. 3361-3369
    • Zaleski, P.1    Wojciechowski, M.2    Piekarowicz, A.3
  • 67
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA methylation
    • doi: 10.1126/science.1186366
    • Zemach, A., McDaniel, I. E., Silva, P., and Zilberman, D. (2010). Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328, 916-919. doi: 10.1126/science.1186366
    • (2010) Science , vol.328 , pp. 916-919
    • Zemach, A.1    McDaniel, I.E.2    Silva, P.3    Zilberman, D.4
  • 68
    • 84875149194 scopus 로고    scopus 로고
    • REVIEW Regulation of nucleosome dynamics by histone modifications
    • doi: 10.1038/nsmb.2470
    • Zentner, G. E., and Henikoff, S. (2013). REVIEW Regulation of nucleosome dynamics by histone modifications. Nat. Struct. Mol. Biol. 20, 259-266. doi: 10.1038/nsmb.2470
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 259-266
    • Zentner, G.E.1    Henikoff, S.2
  • 69
    • 84867088834 scopus 로고    scopus 로고
    • The oyster genome reveals stress adaptation and complexity of shell formation
    • doi: 10.1038/nature11413
    • Zhang, G., Fang, X., Guo, X., Li, L., Luo, R., Xu, F., et al. (2012). The oyster genome reveals stress adaptation and complexity of shell formation. Nature 490, 49-54. doi: 10.1038/nature11413
    • (2012) Nature , vol.490 , pp. 49-54
    • Zhang, G.1    Fang, X.2    Guo, X.3    Li, L.4    Luo, R.5    Xu, F.6
  • 70
    • 84855954243 scopus 로고    scopus 로고
    • DNA methylation plays a crucial role during early Nasonia development
    • doi: 10.1111/j.1365-2583.2011.01121.x
    • Zwier, M. V, Verhulst, E. C., Zwahlen, R. D., Beukeboom, L. W., and van de Zande, L. (2012). DNA methylation plays a crucial role during early Nasonia development. Insect Mol. Biol. 21, 129-138. doi: 10.1111/j.1365-2583.2011.01121.x
    • (2012) Insect Mol. Biol. , vol.21 , pp. 129-138
    • Zwier, M.V.1    Verhulst, E.C.2    Zwahlen, R.D.3    Beukeboom, L.W.4    van de Zande, L.5


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