-
1
-
-
78651311355
-
BRCC36A is epistatic to BRCA1 in DNA crosslink repair and homologous recombination in Arabidopsis thaliana
-
doi: 10.1093/nar/gkq722
-
Block-Schmidt, A. S., Dukowic-Schulze, S., Wanieck, K., Reidt, W., and Puchta, H. (2011). BRCC36A is epistatic to BRCA1 in DNA crosslink repair and homologous recombination in Arabidopsis thaliana. Nucleic Acids Res. 39, 146-154. doi: 10.1093/nar/gkq722
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 146-154
-
-
Block-Schmidt, A.S.1
Dukowic-Schulze, S.2
Wanieck, K.3
Reidt, W.4
Puchta, H.5
-
2
-
-
77955485244
-
Affinity purification of the Arabidopsis 26S proteasome reveals a diverse array of plant proteolytic complexes
-
doi: 10.1074/jbc.M110.136622
-
Book, A. J., Gladman, N. P., Lee, S. S., Scalf, M., Smith, L. M., and Vierstra, R. D. (2010). Affinity purification of the Arabidopsis 26S proteasome reveals a diverse array of plant proteolytic complexes. J. Biol. Chem. 285, 25554-25569. doi: 10.1074/jbc.M110.136622
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 25554-25569
-
-
Book, A.J.1
Gladman, N.P.2
Lee, S.S.3
Scalf, M.4
Smith, L.M.5
Vierstra, R.D.6
-
3
-
-
0037246058
-
ArrayExpress-a public repository for microarray gene expression data at the EBI
-
doi: 10.1093/nar/gkg091
-
Brazma, A., Parkinson, H., Sarkans, U., Shojatalab, M., Vilo, J., Abeygunawardena, N., et al. (2003). ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res. 31, 68-71. doi: 10.1093/nar/gkg091
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 68-71
-
-
Brazma, A.1
Parkinson, H.2
Sarkans, U.3
Shojatalab, M.4
Vilo, J.5
Abeygunawardena, N.6
-
4
-
-
0028836104
-
Structure and evolution of genes encoding polyubiquitin and ubiquitin-like proteins in Arabidopsis thaliana ecotype Columbia
-
Callis, J., Carpenter, T., Sun, C. W., and Vierstra, R. D. (1995). Structure and evolution of genes encoding polyubiquitin and ubiquitin-like proteins in Arabidopsis thaliana ecotype Columbia. Genetics 139, 921-939.
-
(1995)
Genetics
, vol.139
, pp. 921-939
-
-
Callis, J.1
Carpenter, T.2
Sun, C.W.3
Vierstra, R.D.4
-
5
-
-
0025370073
-
Ubiquitin extension proteins of Arabidopsis thaliana. Structure, localization, and expression of their promoters in transgenic tobacco
-
Callis, J., Raasch, J. A., and Vierstra, R. D. (1990). Ubiquitin extension proteins of Arabidopsis thaliana. Structure, localization, and expression of their promoters in transgenic tobacco. J. Biol. Chem. 265, 12486-12493.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 12486-12493
-
-
Callis, J.1
Raasch, J.A.2
Vierstra, R.D.3
-
6
-
-
0030581153
-
The COP9 complex, a novel multisubunit nuclear regulator involved in light control of a plant developmental switch
-
doi: 10.1016/S0092-8674(00)80082-3
-
Chamovitz, D. A., Wei, N., Osterlund, M. T., Von Arnim, A. G., Staub, J. M., Matsui, M., et al. (1996). The COP9 complex, a novel multisubunit nuclear regulator involved in light control of a plant developmental switch. Cell 86, 115-121. doi: 10.1016/S0092-8674(00)80082-3
-
(1996)
Cell
, vol.86
, pp. 115-121
-
-
Chamovitz, D.A.1
Wei, N.2
Osterlund, M.T.3
Von Arnim, A.G.4
Staub, J.M.5
Matsui, M.6
-
7
-
-
0037131242
-
Role of predicted metalloprotease motif of Jab1/Csn5 in cleavage of Nedd8 from Cul1
-
doi: 10.1126/science.10759011075901
-
Cope, G. A., Suh, G. S., Aravind, L., Schwarz, S. E., Zipursky, S. L., Koonin, E. V., et al. (2002). Role of predicted metalloprotease motif of Jab1/Csn5 in cleavage of Nedd8 from Cul1. Science 298, 608-611. doi: 10.1126/science.10759011075901
-
(2002)
Science
, vol.298
, pp. 608-611
-
-
Cope, G.A.1
Suh, G.S.2
Aravind, L.3
Schwarz, S.E.4
Zipursky, S.L.5
Koonin, E.V.6
-
8
-
-
84860660444
-
Toward understanding Machado-Joseph disease
-
doi: 10.1016/j.pneurobio.2011.11.006
-
Costa Mdo, C., and Paulson, H. L. (2012). Toward understanding Machado-Joseph disease. Prog. Neurobiol. 97, 239-257. doi: 10.1016/j.pneurobio.2011.11.006
-
(2012)
Prog. Neurobiol.
, vol.97
, pp. 239-257
-
-
Costa Mdo, C.1
Paulson, H.L.2
-
9
-
-
36249000098
-
The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis
-
doi: 10.1104/pp.106.095323
-
Doelling, J. H., Phillips, A. R., Soyler-Ogretim, G., Wise, J., Chandler, J., Callis, J., et al. (2007). The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis. Plant Physiol. 145, 801-813. doi: 10.1104/pp.106.095323
-
(2007)
Plant Physiol.
, vol.145
, pp. 801-813
-
-
Doelling, J.H.1
Phillips, A.R.2
Soyler-Ogretim, G.3
Wise, J.4
Chandler, J.5
Callis, J.6
-
10
-
-
0034795089
-
The ubiquitin-specific protease UBP14 is essential for early embryo development in Arabidopsis thaliana
-
doi: 10.1046/j.1365-313X.2001.01106.x
-
Doelling, J. H., Yan, N., Kurepa, J., Walker, J., and Vierstra, R. D. (2001). The ubiquitin-specific protease UBP14 is essential for early embryo development in Arabidopsis thaliana. Plant J. 27, 393-405. doi: 10.1046/j.1365-313X.2001.01106.x
-
(2001)
Plant J.
, vol.27
, pp. 393-405
-
-
Doelling, J.H.1
Yan, N.2
Kurepa, J.3
Walker, J.4
Vierstra, R.D.5
-
11
-
-
0345276495
-
Regulation of BRCC, a holoenzyme complex containing BRCA1 and BRCA2, by a signalosome-like subunit and its role in DNA repair
-
doi: 10.1016/S1097-2765(03)00424-6
-
Dong, Y., Hakimi, M. A., Chen, X., Kumaraswamy, E., Cooch, N. S., Godwin, A. K., et al. (2003). Regulation of BRCC, a holoenzyme complex containing BRCA1 and BRCA2, by a signalosome-like subunit and its role in DNA repair. Mol. Cell 12, 1087-1099. doi: 10.1016/S1097-2765(03)00424-6
-
(2003)
Mol. Cell
, vol.12
, pp. 1087-1099
-
-
Dong, Y.1
Hakimi, M.A.2
Chen, X.3
Kumaraswamy, E.4
Cooch, N.S.5
Godwin, A.K.6
-
12
-
-
58149093172
-
FAM/USP9x, a deubiquitinating enzyme essential for TGFbeta signaling, controls Smad4 monoubiquitination
-
doi: 10.1016/j.cell.2008.10.051
-
Dupont, S., Mamidi, A., Cordenonsi, M., Montagner, M., Zacchigna, L., Adorno, M., et al. (2009). FAM/USP9x, a deubiquitinating enzyme essential for TGFbeta signaling, controls Smad4 monoubiquitination. Cell 136, 123-135. doi: 10.1016/j.cell.2008.10.051
-
(2009)
Cell
, vol.136
, pp. 123-135
-
-
Dupont, S.1
Mamidi, A.2
Cordenonsi, M.3
Montagner, M.4
Zacchigna, L.5
Adorno, M.6
-
13
-
-
0034955239
-
Deubiquitination step in the endocytic pathway of yeast plasma membrane proteins: Crucial role of Doa4p ubiquitin isopeptidase
-
doi: 10.1128/MCB.21.14.4482-4494.2001
-
Dupre, S., and Haguenauer-Tsapis, R. (2001). Deubiquitination step in the endocytic pathway of yeast plasma membrane proteins: crucial role of Doa4p ubiquitin isopeptidase. Mol. Cell. Biol. 21, 4482-4494. doi: 10.1128/MCB.21.14.4482-4494.2001
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 4482-4494
-
-
Dupre, S.1
Haguenauer-Tsapis, R.2
-
14
-
-
79957904564
-
Deubiquitinating enzymes AtUBP12 and AtUBP13 and their tobacco homologue NtUBP12 are negative regulators of plant immunity
-
doi: 10.1111/j.1469-8137.2011.03672.x
-
Ewan, R., Pangestuti, R., Thornber, S., Craig, A., Carr, C., O'Donnell, L., et al. (2011). Deubiquitinating enzymes AtUBP12 and AtUBP13 and their tobacco homologue NtUBP12 are negative regulators of plant immunity. New Phytol. 191, 92-106. doi: 10.1111/j.1469-8137.2011.03672.x
-
(2011)
New Phytol.
, vol.191
, pp. 92-106
-
-
Ewan, R.1
Pangestuti, R.2
Thornber, S.3
Craig, A.4
Carr, C.5
O'Donnell, L.6
-
15
-
-
0032483546
-
A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3
-
doi: 10.1016/S0092-8674(00)81603-7
-
Glickman, M. H., Rubin, D. M., Coux, O., Wefes, I., Pfeifer, G., Cjeka, Z., et al. (1998). A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. Cell 94, 615-623. doi: 10.1016/S0092-8674(00)81603-7
-
(1998)
Cell
, vol.94
, pp. 615-623
-
-
Glickman, M.H.1
Rubin, D.M.2
Coux, O.3
Wefes, I.4
Pfeifer, G.5
Cjeka, Z.6
-
16
-
-
0031657807
-
The ubiquitin system
-
doi: 10.1146/annurev.biochem.67.1.425
-
Hershko, A., and Ciechanover, A. (1998). The ubiquitin system. Annu. Rev. Biochem. 67, 425-479. doi: 10.1146/annurev.biochem.67.1.425
-
(1998)
Annu. Rev. Biochem.
, vol.67
, pp. 425-479
-
-
Hershko, A.1
Ciechanover, A.2
-
17
-
-
0030457014
-
Ubiquitin-dependent protein degradation
-
doi: 10.1146/annurev.genet.30.1.405
-
Hochstrasser, M. (1996). Ubiquitin-dependent protein degradation. Annu. Rev. Genet. 30, 405-439. doi: 10.1146/annurev.genet.30.1.405
-
(1996)
Annu. Rev. Genet.
, vol.30
, pp. 405-439
-
-
Hochstrasser, M.1
-
18
-
-
84888437178
-
Regulation of deubiquitinase proteolytic activity
-
doi: 10.1016/j.sbi.2013.07.012
-
Huang, O. W., and Cochran, A. G. (2013). Regulation of deubiquitinase proteolytic activity. Curr. Opin. Struct. Biol. 23, 806-811. doi: 10.1016/j.sbi.2013.07.012
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 806-811
-
-
Huang, O.W.1
Cochran, A.G.2
-
19
-
-
80455143831
-
USP15 is a deubiquitylating enzyme for receptor-activated SMADs
-
doi: 10.1038/ncb2346
-
Inui, M., Manfrin, A., Mamidi, A., Martello, G., Morsut, L., Soligo, S., et al. (2011). USP15 is a deubiquitylating enzyme for receptor-activated SMADs. Nat. Cell Biol. 13, 1368-1375. doi: 10.1038/ncb2346
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 1368-1375
-
-
Inui, M.1
Manfrin, A.2
Mamidi, A.3
Martello, G.4
Morsut, L.5
Soligo, S.6
-
20
-
-
77955878045
-
The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana
-
doi: 10.1105/tpc.110.075952
-
Isono, E., Katsiarimpa, A., Muller, I. K., Anzenberger, F., Stierhof, Y. D., Geldner, N., et al. (2010). The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana. Plant Cell 22, 1826-1837. doi: 10.1105/tpc.110.075952
-
(2010)
Plant Cell
, vol.22
, pp. 1826-1837
-
-
Isono, E.1
Katsiarimpa, A.2
Muller, I.K.3
Anzenberger, F.4
Stierhof, Y.D.5
Geldner, N.6
-
21
-
-
35548986309
-
Regulation of cell cycle progression and gene expression by H2A deubiquitination
-
doi: 10.1038/nature06256
-
Joo, H. Y., Zhai, L., Yang, C., Nie, S., Erdjument-Bromage, H., Tempst, P., et al. (2007). Regulation of cell cycle progression and gene expression by H2A deubiquitination. Nature 449, 1068-1072. doi: 10.1038/nature06256
-
(2007)
Nature
, vol.449
, pp. 1068-1072
-
-
Joo, H.Y.1
Zhai, L.2
Yang, C.3
Nie, S.4
Erdjument-Bromage, H.5
Tempst, P.6
-
22
-
-
80053208035
-
The Arabidopsis deubiquitinating enzyme AMSH3 interacts with ESCRT-III subunits and regulates their localization
-
doi: 10.1105/tpc.111.087254
-
Katsiarimpa, A., Anzenberger, F., Schlager, N., Neubert, S., Hauser, M. T., Schwechheimer, C., et al. (2011). The Arabidopsis deubiquitinating enzyme AMSH3 interacts with ESCRT-III subunits and regulates their localization. Plant Cell 23, 3026-3040. doi: 10.1105/tpc.111.087254
-
(2011)
Plant Cell
, vol.23
, pp. 3026-3040
-
-
Katsiarimpa, A.1
Anzenberger, F.2
Schlager, N.3
Neubert, S.4
Hauser, M.T.5
Schwechheimer, C.6
-
23
-
-
84880952097
-
The deubiquitinating enzyme AMSH1 and the ESCRT-III subunit VPS2.1 are required for autophagic degradation in Arabidopsis
-
doi: 10.1105/tpc.113.113399
-
Katsiarimpa, A., Kalinowska, K., Anzenberger, F., Weis, C., Ostertag, M., Tsutsumi, C., et al. (2013). The deubiquitinating enzyme AMSH1 and the ESCRT-III subunit VPS2.1 are required for autophagic degradation in Arabidopsis. Plant Cell 25, 2236-2252. doi: 10.1105/tpc.113.113399
-
(2013)
Plant Cell
, vol.25
, pp. 2236-2252
-
-
Katsiarimpa, A.1
Kalinowska, K.2
Anzenberger, F.3
Weis, C.4
Ostertag, M.5
Tsutsumi, C.6
-
24
-
-
68049084674
-
Breaking the chains: Structure and function of the deubiquitinases
-
doi: 10.1038/nrm2731
-
Komander, D., Clague, M. J., and Urbe, S. (2009). Breaking the chains: structure and function of the deubiquitinases. Nat. Rev. Mol. Cell Biol. 10, 550-563. doi: 10.1038/nrm2731
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 550-563
-
-
Komander, D.1
Clague, M.J.2
Urbe, S.3
-
25
-
-
79960582700
-
Involvement of KDM1C histone demethylase-OTLD1 otubain-like histone deubiquitinase complexes in plant gene repression
-
doi: 10.1073/pnas.1014030108
-
Krichevsky, A., Zaltsman, A., Lacroix, B., and Citovsky, V. (2011). Involvement of KDM1C histone demethylase-OTLD1 otubain-like histone deubiquitinase complexes in plant gene repression. Proc. Natl. Acad. Sci. U.S.A. 108, 11157-11162. doi: 10.1073/pnas.1014030108
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 11157-11162
-
-
Krichevsky, A.1
Zaltsman, A.2
Lacroix, B.3
Citovsky, V.4
-
26
-
-
0027165193
-
Cloning of a cDNA which encodes a novel ubiquitin-like protein
-
doi: 10.1006/bbrc.1993.2056
-
Kumar, S., Yoshida, Y., and Noda, M. (1993). Cloning of a cDNA which encodes a novel ubiquitin-like protein. Biochem. Biophys. Res. Commun. 195, 393-399. doi: 10.1006/bbrc.1993.2056
-
(1993)
Biochem. Biophys. Res. Commun.
, vol.195
, pp. 393-399
-
-
Kumar, S.1
Yoshida, Y.2
Noda, M.3
-
27
-
-
76549108991
-
Ubiquitin-specific protease 14 (UBP14) is involved in root responses to phosphate deficiency in Arabidopsis
-
doi: 10.1093/mp/ssp086
-
Li, W. F., Perry, P. J., Prafulla, N. N., and Schmidt, W. (2010). Ubiquitin-specific protease 14 (UBP14) is involved in root responses to phosphate deficiency in Arabidopsis. Mol. Plant 3, 212-223. doi: 10.1093/mp/ssp086
-
(2010)
Mol. Plant
, vol.3
, pp. 212-223
-
-
Li, W.F.1
Perry, P.J.2
Prafulla, N.N.3
Schmidt, W.4
-
28
-
-
49849101521
-
Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development
-
doi: 10.1111/j.1365-313X.2008.03557.x
-
Liu, Y., Wang, F., Zhang, H., He, H., Ma, L., and Deng, X. W. (2008). Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development. Plant J. 55, 844-856. doi: 10.1111/j.1365-313X.2008.03557.x
-
(2008)
Plant J.
, vol.55
, pp. 844-856
-
-
Liu, Y.1
Wang, F.2
Zhang, H.3
He, H.4
Ma, L.5
Deng, X.W.6
-
29
-
-
0026722530
-
The interferon-inducible 15-kDa ubiquitin homolog conjugates to intracellular proteins
-
Loeb, K. R., and Haas, A. L. (1992). The interferon-inducible 15-kDa ubiquitin homolog conjugates to intracellular proteins. J. Biol. Chem. 267, 7806-7813.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 7806-7813
-
-
Loeb, K.R.1
Haas, A.L.2
-
30
-
-
56049101398
-
UBIQUITIN-SPECIFIC PROTEASE 26 is required for seed development and the repression of PHERES1 in Arabidopsis
-
doi: 10.1534/genetics.108.091736
-
Luo, M., Luo, M. Z., Buzas, D., Finnegan, J., Helliwell, C., Dennis, E. S., et al. (2008). UBIQUITIN-SPECIFIC PROTEASE 26 is required for seed development and the repression of PHERES1 in Arabidopsis. Genetics 180, 229-236. doi: 10.1534/genetics.108.091736
-
(2008)
Genetics
, vol.180
, pp. 229-236
-
-
Luo, M.1
Luo, M.Z.2
Buzas, D.3
Finnegan, J.4
Helliwell, C.5
Dennis, E.S.6
-
31
-
-
0030455748
-
A novel ubiquitin-like modification modulates the partitioning of the Ran-GTPase-activating protein RanGAP1 between the cytosol and the nuclear pore complex
-
doi: 10.1083/jcb.135.6.1457
-
Matunis, M. J., Coutavas, E., and Blobel, G. (1996). A novel ubiquitin-like modification modulates the partitioning of the Ran-GTPase-activating protein RanGAP1 between the cytosol and the nuclear pore complex. J. Cell Biol. 135, 1457-1470. doi: 10.1083/jcb.135.6.1457
-
(1996)
J. Cell Biol.
, vol.135
, pp. 1457-1470
-
-
Matunis, M.J.1
Coutavas, E.2
Blobel, G.3
-
32
-
-
34248350363
-
MPN+, a putative catalytic motif found in a subset of MPN domain proteins from eukaryotes and prokaryotes, is critical for Rpn11 function
-
doi: 10.1186/1471-2091-3-28
-
Maytal-Kivity, V., Reis, N., Hofmann, K., and Glickman, M. H. (2002). MPN+, a putative catalytic motif found in a subset of MPN domain proteins from eukaryotes and prokaryotes, is critical for Rpn11 function. BMC Biochem. 3:28. doi: 10.1186/1471-2091-3-28
-
(2002)
BMC Biochem.
, vol.3
, pp. 28
-
-
Maytal-Kivity, V.1
Reis, N.2
Hofmann, K.3
Glickman, M.H.4
-
33
-
-
4143080425
-
AMSH is an endosome-associated ubiquitin isopeptidase
-
doi: 10.1083/jcb.200401141
-
McCullough, J., Clague, M. J., and Urbe, S. (2004). AMSH is an endosome-associated ubiquitin isopeptidase. J. Cell Biol. 166, 487-492. doi: 10.1083/jcb.200401141
-
(2004)
J. Cell Biol.
, vol.166
, pp. 487-492
-
-
McCullough, J.1
Clague, M.J.2
Urbe, S.3
-
34
-
-
84878832998
-
OTU deubiquitinases reveal mechanisms of linkage specificity and enable ubiquitin chain restriction analysis
-
doi: 10.1016/j.cell.2013.05.046
-
Mevissen, T. E., Hospenthal, M. K., Geurink, P. P., Elliott, P. R., Akutsu, M., Arnaudo, N., et al. (2013). OTU deubiquitinases reveal mechanisms of linkage specificity and enable ubiquitin chain restriction analysis. Cell 154, 169-184. doi: 10.1016/j.cell.2013.05.046
-
(2013)
Cell
, vol.154
, pp. 169-184
-
-
Mevissen, T.E.1
Hospenthal, M.K.2
Geurink, P.P.3
Elliott, P.R.4
Akutsu, M.5
Arnaudo, N.6
-
35
-
-
33745754789
-
A deubiquitinating enzyme UBPY regulates the level of protein ubiquitination on endosomes
-
doi: 10.1111/j.1600-0854.2006.00452.x
-
Mizuno, E., Kobayashi, K., Yamamoto, A., Kitamura, N., and Komada, M. (2006). A deubiquitinating enzyme UBPY regulates the level of protein ubiquitination on endosomes. Traffic 7, 1017-1031. doi: 10.1111/j.1600-0854.2006.00452.x
-
(2006)
Traffic
, vol.7
, pp. 1017-1031
-
-
Mizuno, E.1
Kobayashi, K.2
Yamamoto, A.3
Kitamura, N.4
Komada, M.5
-
36
-
-
38149081168
-
Deubiquitylation of histone H2A activates transcriptional initiation via trans-histone cross-talk with H3K4 di-and trimethylation
-
doi: 10.1101/gad.1609708
-
Nakagawa, T., Kajitani, T., Togo, S., Masuko, N., Ohdan, H., Hishikawa, Y., et al. (2008). Deubiquitylation of histone H2A activates transcriptional initiation via trans-histone cross-talk with H3K4 di-and trimethylation. Genes Dev. 22, 37-49. doi: 10.1101/gad.1609708
-
(2008)
Genes Dev.
, vol.22
, pp. 37-49
-
-
Nakagawa, T.1
Kajitani, T.2
Togo, S.3
Masuko, N.4
Ohdan, H.5
Hishikawa, Y.6
-
37
-
-
63649131003
-
Substrate filtering by the active site crossover loop in UCHL3 revealed by sortagging and gain-of-function mutations
-
doi: 10.1074/jbc.M807172200
-
Popp, M. W., Artavanis-Tsakonas, K., and Ploegh, H. L. (2009). Substrate filtering by the active site crossover loop in UCHL3 revealed by sortagging and gain-of-function mutations. J. Biol. Chem. 284, 3593-3602. doi: 10.1074/jbc.M807172200
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 3593-3602
-
-
Popp, M.W.1
Artavanis-Tsakonas, K.2
Ploegh, H.L.3
-
38
-
-
67650620318
-
Regulation and cellular roles of ubiquitin-specific deubiquitinating enzymes
-
doi: 10.1146/annurev.biochem.78.082307.091526
-
Reyes-Turcu, F. E., Ventii, K. H., and Wilkinson, K. D. (2009). Regulation and cellular roles of ubiquitin-specific deubiquitinating enzymes. Annu. Rev. Biochem. 78, 363-397. doi: 10.1146/annurev.biochem.78.082307.091526
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 363-397
-
-
Reyes-Turcu, F.E.1
Ventii, K.H.2
Wilkinson, K.D.3
-
39
-
-
33646788800
-
The ubiquitin isopeptidase UBPY regulates endosomal ubiquitin dynamics and is essential for receptor down-regulation
-
doi: 10.1074/jbc.M512615200
-
Row, P. E., Prior, I. A., Mccullough, J., Clague, M. J., and Urbé, S. (2006). The ubiquitin isopeptidase UBPY regulates endosomal ubiquitin dynamics and is essential for receptor down-regulation. J. Biol. Chem. 281, 12618-12624. doi: 10.1074/jbc.M512615200
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 12618-12624
-
-
Row, P.E.1
Prior, I.A.2
McCullough, J.3
Clague, M.J.4
Urbé, S.5
-
40
-
-
52149103164
-
Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains
-
doi: 10.1038/nature07254
-
Sato, Y., Yoshikawa, A., Yamagata, A., Mimura, H., Yamashita, M., Ookata, K., et al. (2008). Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains. Nature 455, 358-362. doi: 10.1038/nature07254
-
(2008)
Nature
, vol.455
, pp. 358-362
-
-
Sato, Y.1
Yoshikawa, A.2
Yamagata, A.3
Mimura, H.4
Yamashita, M.5
Ookata, K.6
-
41
-
-
60249097612
-
Histone H2B deubiquitination is required for transcriptional activation of FLOWERING LOCUS C and for proper control of flowering in Arabidopsis
-
doi: 10.1104/pp.108.131508
-
Schmitz, R. J., Tamada, Y., Doyle, M. R., Zhang, X., and Amasino, R. M. (2009). Histone H2B deubiquitination is required for transcriptional activation of FLOWERING LOCUS C and for proper control of flowering in Arabidopsis. Plant Physiol. 149, 1196-1204. doi: 10.1104/pp.108.131508
-
(2009)
Plant Physiol.
, vol.149
, pp. 1196-1204
-
-
Schmitz, R.J.1
Tamada, Y.2
Doyle, M.R.3
Zhang, X.4
Amasino, R.M.5
-
42
-
-
34250025664
-
Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination
-
doi: 10.1038/nature05864
-
Sridhar, V. V., Kapoor, A., Zhang, K., Zhu, J., Zhou, T., Hasegawa, P. M., et al. (2007). Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination. Nature 447, 735-738. doi: 10.1038/nature05864
-
(2007)
Nature
, vol.447
, pp. 735-738
-
-
Sridhar, V.V.1
Kapoor, A.2
Zhang, K.3
Zhu, J.4
Zhou, T.5
Hasegawa, P.M.6
-
43
-
-
0037131243
-
Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome
-
doi: 10.1126/science.1075898
-
Verma, R., Aravind, L., Oania, R., Mcdonald, W. H., Yates, J. R. III, Koonin, E. V., et al. (2002). Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome. Science 298, 611-615. doi: 10.1126/science.1075898
-
(2002)
Science
, vol.298
, pp. 611-615
-
-
Verma, R.1
Aravind, L.2
Oania, R.3
McDonald, W.H.4
Yates III, J.R.5
Koonin, E.V.6
-
44
-
-
67349254570
-
The ubiquitin-26S proteasome system at the nexus of plant biology
-
doi: 10.1038/nrm2688
-
Vierstra, R. D. (2009). The ubiquitin-26S proteasome system at the nexus of plant biology. Nat. Rev. Mol. Cell Biol. 10, 385-397. doi: 10.1038/nrm2688
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 385-397
-
-
Vierstra, R.D.1
-
45
-
-
84865855321
-
The expanding universe of ubiquitin and ubiquitin-like modifiers
-
doi: 10.1104/pp.112.200667
-
Vierstra, R. D. (2012). The expanding universe of ubiquitin and ubiquitin-like modifiers. Plant Physiol. 160, 2-14. doi: 10.1104/pp.112.200667
-
(2012)
Plant Physiol.
, vol.160
, pp. 2-14
-
-
Vierstra, R.D.1
-
46
-
-
0034512691
-
The ubiquitin-specific protease family from Arabidopsis. AtUBP1 and 2 are required for the resistance to the amino acid analog canavanine
-
doi: 10.1104/pp.124.4.1828
-
Yan, N., Doelling, J. H., Falbel, T. G., Durski, A. M., and Vierstra, R. D. (2000). The ubiquitin-specific protease family from Arabidopsis. AtUBP1 and 2 are required for the resistance to the amino acid analog canavanine. Plant Physiol. 124, 1828-1843. doi: 10.1104/pp.124.4.1828
-
(2000)
Plant Physiol.
, vol.124
, pp. 1828-1843
-
-
Yan, N.1
Doelling, J.H.2
Falbel, T.G.3
Durski, A.M.4
Vierstra, R.D.5
-
47
-
-
34547135169
-
Ubiquitin C-terminal hydrolases 1 and 2 affect shoot architecture in Arabidopsis
-
doi: 10.1111/j.1365-313X.2007.03154.x
-
Yang, P., Smalle, J., Lee, S., Yan, N., Emborg, T. J., and Vierstra, R. D. (2007). Ubiquitin C-terminal hydrolases 1 and 2 affect shoot architecture in Arabidopsis. Plant J. 51, 441-457. doi: 10.1111/j.1365-313X.2007.03154.x
-
(2007)
Plant J.
, vol.51
, pp. 441-457
-
-
Yang, P.1
Smalle, J.2
Lee, S.3
Yan, N.4
Emborg, T.J.5
Vierstra, R.D.6
-
48
-
-
34547730282
-
A histone H2A deubiquitinase complex coordinating histone acetylation and H1 dissociation in transcriptional regulation
-
doi: 10.1016/j.molcel.2007.07.024
-
Zhu, P., Zhou, W., Wang, J., Puc, J., Ohgi, K. A., Erdjument-Bromage, H., et al. (2007). A histone H2A deubiquitinase complex coordinating histone acetylation and H1 dissociation in transcriptional regulation. Mol. Cell 27, 609-621. doi: 10.1016/j.molcel.2007.07.024
-
(2007)
Mol. Cell
, vol.27
, pp. 609-621
-
-
Zhu, P.1
Zhou, W.2
Wang, J.3
Puc, J.4
Ohgi, K.A.5
Erdjument-Bromage, H.6
|