Oceanobacillus luteolus sp. nov., isolated from soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 5, 2014, Pages 1495-1500

  Wu, Min ^a,b   Yang, Guiqin ^a   Yu, Zhen ^a   Zhuang, Li ^a   Jin, Yingqiang ^a   Zhou, Shungui ^a  

^a GUANGDONG INSTITUTE OF ECO ENVIRONMENTAL AND SOIL SCIENCES   (China)

^b SICHUAN NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; CATALASE; DIAMINOPIMELIC ACID; LYSINE DECARBOXYLASE; MENAQUINONE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; QUINONE DERIVATIVE; RNA 16S;

ARTICLE; BACILLACEAE; BACTERIAL CELL WALL; BACTERIAL STRAIN; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; OCEANOBACILLUS LUTEOLUS; PRIORITY JOURNAL; SOIL;

BACILLACEAE; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DIAMINOPIMELIC ACID; DNA, BACTERIAL; ECOSYSTEM; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; ORYZA SATIVA; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROLS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; TREES; VITAMIN K 2;

EID: 84900002235     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.057869-0     Document Type: Article

References (36)

1. Amoozegar, M. A., Bagheri, M., Makhdoumi-Kakhki, A., Didari, M., Schumann, P., Spröer, C., Sá nchez-Porro, C. & Ventosa, A. (2014). Oceanobacillus limi sp. nov., a novel moderately halophilic bacterium from a salt lake. Int J Syst Evol Microbiol 64 (in press).
2. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2, 4-diaminobutyric acids. J Appl Bacteriol 48, 459-470.
3. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
4. Dong, X. Z. & Cai, M. Y. (2001). Determinative Manual for Routine Bacteriology. Beijing: Scientific Press.
5. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. González, A. J., Ferná ndez, A. M., San José, M., González-Varela, G. & Rodicio, M. R. (2012). A Pseudomonas viridiflava-related bacterium causes a dark-reddish spot disease in Glycine max. Appl Environ Microbiol 78, 3756-3758.
7. Hirota, K., Aino, K., Nodasaka, Y. & Yumoto, I. (2013a). Oceanobacillus indicireducens sp. nov., a facultative alkaliphile that reduces an indigo dye. Int J Syst Evol Microbiol 63, 1437-1442.
8. Hirota, K., Hanaoka, Y., Nodasaka, Y. & Yumoto, I. (2013b). Oceanobacillus polygoni sp. nov., a facultatively alkaliphile isolated from indigo fermentation fluid. Int J Syst Evol Microbiol 63, 3307-3312.
9. Kim, Y. G., Choi, D. H., Hyun, S. & Cho, B. C. (2007). Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core. Int J Syst Evol Microbiol 57, 409-413.
10. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
11. Lane, D. L. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
12. Lee, J. S., Lim, J. M., Lee, K. C., Lee, J. C., Park, Y. H. & Kim, C. J. (2006). Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. Int J Syst Evol Microbiol 56, 251-257.
13. Lee, S. Y., Oh, T. K., Kim, W. & Yoon, J. H. (2010). Oceanobacillus locisalsi sp. nov., isolated from a marine solar saltern. Int J Syst Evol Microbiol 60, 2758-2762.
14. Lee, D. C., Kang, H., Weerawongwiwat, V., Kim, B., Choi, Y.-W. & Kim, W. (2013). Oceanobacillus chungangensis sp. nov., isolated from a sand dune. Int J Syst Evol Microbiol 63, 3666-3671.
15. Logan, N. A., Berge, O., Bishop, A. H., Busse, H. J., De Vos, P., Fritze, D., Heyndrickx, M., Kämpfer, P., Rabinovitch, L. & other authors (2009). Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 59, 2114-2121.
16. Lu, J., Nogi, Y. & Takami, H. (2001). Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. FEMS Microbiol Lett 205, 291-297.
17. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
18. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
19. Nam, J. H., Bae, W. & Lee, D. H. (2008). Oceanobacillus caeni sp. nov., isolated from a Bacillus-dominated wastewater treatment system in Korea. Int J Syst Evol Microbiol 58, 1109-1113.
20. Namwong, S., Tanasupawat, S., Lee, K. C. & Lee, J. S. (2009). Oceanobacillus kapialis sp. nov., from fermented shrimp paste in Thailand. Int J Syst Evol Microbiol 59, 2254-2259.
21. Raats, D. & Halpern, M. (2007). Oceanobacillus chironomi sp. nov., a halotolerant and facultatively alkaliphilic species isolated from a chironomid egg mass. Int J Syst Evol Microbiol 57, 255-259.
22. Rhuland, L. E., Work, E., Denman, R. F. & Hoare, D. S. (1955). The behaviour of the isomers of a,e-diaminopimelic acid on paper chromatograms. J Am Chem Soc 77, 4844-4846.
23. Romano, I., Lama, L., Nicolaus, B., Poli, A., Gambacorta, A. & Giordano, A. (2006). Oceanobacillus oncorhynchi subsp. incaldanensis subsp. nov., an alkalitolerant halophile isolated from an algal mat collected from a sulfurous spring in Campania (Italy), and emended description of Oceanobacillus oncorhynchi. Int J Syst Evol Microbiol 56, 805-810.
24. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
25. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high-performance liquid chromatography. J Appl Bacteriol 54, 31-36.
26. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
27. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
28. Tominaga, T., An, S. Y., Oyaizu, H. & Yokota, A. (2009). Oceanobacillus soja sp. nov. isolated from soy sauce production equipment in Japan. J Gen Appl Microbiol 55, 225-232.
29. Wang, L., Liu, W. Y., Gu, Z. J., Chen, S. F. & Yang, S. S. (2010). Oceanobacillus manasiensis sp. nov., a moderately halophilic bacterium isolated from the salt lakes of Xinjiang, China. J Microbiol 48, 312-317.
30. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
31. Whon, T. W., Jung, M. J., Roh, S. W., Nam, Y. D., Park, E. J., Shin, K. S. & Bae, J. W. (2010). Oceanobacillus kimchii sp. nov. isolated from a traditional Korean fermented food. J Microbiol 48, 862-866.
32. Yang, J. Y., Huo, Y. Y., Xu, X. W., Meng, F. X., Wu, M. & Wang, C. S. (2010). Oceanobacillus neutriphilus sp. nov., isolated from activated sludge in a bioreactor. Int J Syst Evol Microbiol 60, 2409-2414.
33. Yang, G. Q., Zhang, J., Kwon, S. W., Zhou, S. G., Han, L. C., Chen, M., Ma, C. & Zhuang, L. (2013). Thauera humireducens sp. nov., a humusreducing bacterium isolated from a microbial fuel cell. Int J Syst Evol Microbiol 63, 873-878.
34. Yu, C., Yu, S., Zhang, Z., Li, Z. & Zhang, X. H. (2014). Oceanobacillus pacificus sp. nov., isolated from a deep-sea sediment of the South Pacific Gyre. Int J Syst Evol Microbiol.
35. Yumoto, I., Hirota, K., Nodasaka, Y. & Nakajima, K. (2005). Oceanobacillus oncorhynchi sp. nov., a halotolerant obligate alkaliphile isolated from the skin of a rainbow trout (Oncorhynchus mykiss), and emended description of the genus Oceanobacillus. Int J Syst Evol Microbiol 55, 1521-1524.
36. Zhang, L., Wang, Y., Dai, J., Tang, Y., Yang, Q., Luo, X. & Fang, C. (2009). Bacillus korlensis sp. nov., a moderately halotolerant bacterium isolated from a sand soil sample in China. Int J Syst Evol Microbiol 59, 1787-1792.