Oceanobacillus chungangensis sp. nov., isolated from a sand dune

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART10, 2013, Pages 3666-3671

  Lee, Dong Chae ^a   Kang, Hyeonji ^a   Weerawongwiwat, Veeraya ^a   Kim, Beomjoon ^a   Choi, Young Wan ^b   Kim, Wonyong ^a  

^a Chung Ang University College of Medicine   (South Korea)

^b Chung Ang University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMYGDALIN; ARABINOSE; CARDIOLIPIN; CASEIN; DIAMINOPIMELIC ACID; ESCULIN; FRUCTOSE; GALACTOSE; GELATIN; GLUCOSE; GLYCEROL; GLYCOLIPID; MALTOSE; MANNITOL; MANNOSE; MELIBIOSE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; QUINONE DERIVATIVE; RAFFINOSE; RHAMNOSE; RIBOSE; RNA 16S; SALICIN; SORBITOL; TREHALOSE; XYLOSE;

ARTICLE; CELL WALL; DNA RECOMBINATION; GENE SEQUENCE; GRAM POSITIVE BACTERIUM; LIPID COMPOSITION; NONHUMAN; OCEANOBACILLUS CAENI; OCEANOBACILLUS CHUNGANGENSIS; OCEANOBACILLUS PICTURAE; OCEANOBACILLUS PROFUNDUS; PHYLOGENY; PRIORITY JOURNAL; SAND;

BACILLACEAE; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DIAMINOPIMELIC ACID; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SILICON DIOXIDE; VITAMIN K 2;

EID: 84885194767     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.046441-0     Document Type: Article

References (37)

1. Cappuccino, J. G. & Sherman, N. (2002). Microbiology: a Laboratory Manual, 6th edn. Menlo Park, CA: Benjamin/Cummings.
2. Conn, H. J., Bartholomew, J. W. & Jennison, M. W. (1957). Staining methods. In Manual of Microbiological Methods, pp. 30-36. Edited by the Society of American Bacteriologists. New York: McGraw-Hill.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Felsenstein, J. (1989). PHYLIP-phylogeny inference package (version 3.2). Cladistics 5, 164-166.
7. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees. Science 155, 279-284.
8. Gordon, R. E. & Mihm, J. M. (1962). Identification of Nocardia caviae (Erikson) nov. comb. Ann N Y Acad Sci 98, 628-636.
9. Goris, J., Suzuki, K., De Vos, P., Nakase, T. & Kersters, K. (1998). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44, 1148-1153.
10. Heyrman, J., Logan, N. A., Busse, H.-J., Balcaen, A., Lebbe, L., Rodriguez-Diaz, M., Swings, J. & De Vos, P. (2003). Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus. Int J Syst Evol Microbiol 53, 501-511.
11. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. H. Munro. New York: Academic Press.
12. Kämpfer, P., Falsen, E., Lodders, N., Langer, S., Busse, H. J. & Schumann, P. (2010). Ornithinibacillus contaminans sp. nov., an endospore-forming species. Int J Syst Evol Microbiol 60, 2930-2934.
13. Kim, Y.-G., Choi, D. H., Hyun, S. & Cho, B. C. (2007). Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core. Int J Syst Evol Microbiol 57, 409-413.
14. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
15. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
16. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
17. Lee, J.-S., Lim, J.-M., Lee, K. C., Lee, J. C., Park, Y.-H. & Kim, C.-J. (2006). Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. Int J Syst Evol Microbiol 56, 251-257.
18. Lee, S. Y., Oh, T. K., Kim, W. & Yoon, J. H. (2010). Oceanobacillus locisalsi sp. nov., isolated from a marine solar saltern. Int J Syst Evol Microbiol 60, 2758-2762.
19. Lu, J., Nogi, Y. & Takami, H. (2001). Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. FEMS Microbiol Lett 205, 291-297.
20. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
21. Minnikin, D. E., Hutchinson, I. G., Caldicott, A. B. & Goodfellow, M. (1980). Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr A 188, 221-233.
22. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
23. Nam, S. W., Kim, W., Chun, J. & Goodfellow, M. (2004). Tsukamurella pseudospumae sp. nov., a novel actinomycete isolated from activated sludge foam. Int J Syst Evol Microbiol 54, 1209-1212.
24. Nam, J.-H., Bae, W. & Lee, D.-H. (2008). Oceanobacillus caeni sp. nov., isolated from a Bacillus-dominated wastewater treatment system in Korea. Int J Syst Evol Microbiol 58, 1109-1113.
25. Namwong, S., Tanasupawat, S., Lee, K. C. & Lee, J. S. (2009). Oceanobacillus kapialis sp. nov., from fermented shrimp paste in Thailand. Int J Syst Evol Microbiol 59, 2254-2259.
26. Nicholson, W. L. & Setlow, P. (1990). Sporulation, germination and outgrowth. In Molecular Biological Methods for Bacillus, pp. 391-450. Edited by C. R. Harwood & S. M. Cutting. Chichester: Wiley.
27. Raats, D. & Halpern, M. (2007). Oceanobacillus chironomi sp. nov., a halotolerant and facultatively alkaliphilic species isolated from a chironomid egg mass. Int J Syst Evol Microbiol 57, 255-259.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
29. Schleifer, K. H. & Seidl, P. H. (1985). Chemical composition and structure of murein. In Chemical Methods in Bacterial Systematics, pp. 201-219. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
30. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
31. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
32. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
33. Tominaga, T., An, S. Y., Oyaizu, H. & Yokota, A. (2009). Oceanobacillus soja sp. nov. isolated from soy sauce production equipment in Japan. J Gen Appl Microbiol 55, 225-232.
34. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
35. Whon, T. W., Jung, M. J., Roh, S. W., Nam, Y. D., Park, E. J., Shin, K. S. & Bae, J. W. (2010). Oceanobacillus kimchii sp. nov. isolated from a traditional Korean fermented food. J Microbiol 48, 862-866.
36. Yang, J. Y., Huo, Y. Y., Xu, X. W., Meng, F. X., Wu, M. & Wang, C. S. (2010). Oceanobacillus neutriphilus sp. nov., isolated from activated sludge in a bioreactor. Int J Syst Evol Microbiol 60, 2409-2414.
37. Yumoto, I., Hirota, K., Nodasaka, Y. & Nakajima, K. (2005). Oceanobacillus oncorhynchi sp. nov., a halotolerant obligate alkaliphile isolated from the skin of a rainbow trout (Oncorhynchus mykiss), and emended description of the genus Oceanobacillus. Int J Syst Evol Microbiol 55, 1521-1524.