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Volumn 63, Issue PART9, 2013, Pages 3307-3312

Oceanobacillus polygoni sp. nov., a facultatively alkaliphile isolated from indigo fermentation fluid

Author keywords

[No Author keywords available]

Indexed keywords

ACID; ACID PHOSPHATASE; ALKALINE PHOSPHATASE; ALPHA METHYL MANNOSIDE; ALPHA METHYLGLUCOSIDE; ARABINOSE; ARGININE DEIMINASE; ARYL ACYLAMIDASE; BACTERIAL DNA; BETA GLUCURONIDASE; CHYMOTRYPSIN; CITRIC ACID; CYSTINE; ERYTHRITOL; ESCULIN; FATTY ACID; GELATIN; GLUCOSE; GLYCEROL; ISOPRENOID; LEUCINE; LYSINE DECARBOXYLASE; MALIC ACID; MENAQUINONE; MENAQUINONE 7; ORNITHINE DECARBOXYLASE; RNA 16S; TAGATOSE; UNCLASSIFIED DRUG; UREASE;

EID: 84883813801     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.048595-0     Document Type: Article
Times cited : (26)

References (37)
  • 3
    • 0019306204 scopus 로고
    • Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2, 4-diaminobutyric acids
    • Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2, 4-diaminobutyric acids. J Appl Bacteriol 48, 459-470.
    • (1980) J Appl Bacteriol , vol.48 , pp. 459-470
    • Collins, M.D.1    Jones, D.2
  • 4
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 5
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 6
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
    • (1971) Syst Zool , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 7
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 8
    • 0037354631 scopus 로고    scopus 로고
    • Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus Salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus
    • Heyrman, J., Logan, N. A., Busse, H.-J., Balcaen, A., Lebbe, L., Rodriguez-Diaz, M., Swings, J. & De Vos, P. (2003). Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus Salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus. Int J Syst Evol Microbiol 53, 501-511.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 501-511
    • Heyrman, J.1    Logan, N.A.2    Busse, H.-J.3    Balcaen, A.4    Lebbe, L.5    Rodriguez-Diaz, M.6    Swings, J.7    de Vos, P.8
  • 9
    • 84874036145 scopus 로고    scopus 로고
    • Oceanobacillus indicireducens sp. nov., a facultative alkaliphile that reduces an indigo dye
    • Hirota, K., Aino, K., Nodasaka, Y. & Yumoto, I. (2013). Oceanobacillus indicireducens sp. nov., a facultative alkaliphile that reduces an indigo dye. Int J Syst Evol Microbiol 63, 1437-1442.
    • (2013) Int J Syst Evol Microbiol , vol.63 , pp. 1437-1442
    • Hirota, K.1    Aino, K.2    Nodasaka, Y.3    Yumoto, I.4
  • 10
    • 33847292286 scopus 로고    scopus 로고
    • Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core
    • Kim, Y.-G., Choi, D. H., Hyun, S. & Cho, B. C. (2007). Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core. Int J Syst Evol Microbiol 57, 409-413.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 409-413
    • Kim, Y.-G.1    Choi, D.H.2    Hyun, S.3    Cho, B.C.4
  • 11
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 12
    • 31344445561 scopus 로고    scopus 로고
    • Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions
    • Lee, J.-S., Lim, J.-M., Lee, K. C., Lee, J. C., Park, Y.-H. & Kim, C.-J. (2006). Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. Int J Syst Evol Microbiol 56, 251-257.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 251-257
    • Lee, J.-S.1    Lim, J.-M.2    Lee, K.C.3    Lee, J.C.4    Park, Y.-H.5    Kim, C.-J.6
  • 13
    • 78650074362 scopus 로고    scopus 로고
    • Oceanobacillus locisalsi sp. nov., isolated from a marine solar saltern
    • Lee, S.-Y., Oh, T.-K., Kim, W. & Yoon, J.-H. (2010). Oceanobacillus locisalsi sp. nov., isolated from a marine solar saltern. Int J Syst Evol Microbiol 60, 2758-2762.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 2758-2762
    • Lee, S.-Y.1    Oh, T.-K.2    Kim, W.3    Yoon, J.-H.4
  • 14
    • 0035910123 scopus 로고    scopus 로고
    • Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge
    • Lu, J., Nogi, Y. & Takami, H. (2001). Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. FEMS Microbiol Lett 205, 291-297.
    • (2001) FEMS Microbiol Lett , vol.205 , pp. 291-297
    • Lu, J.1    Nogi, Y.2    Takami, H.3
  • 15
    • 85010439719 scopus 로고
    • A procedure for the isolation of deoxyribonucleic acid from micro-organisms
    • Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3, 208-218.
    • (1961) J Mol Biol , vol.3 , pp. 208-218
    • Marmur, J.1
  • 16
    • 0018393563 scopus 로고
    • Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa
    • Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
    • (1979) J Appl Bacteriol , vol.47 , pp. 87-95
    • Minnikin, D.E.1    Collins, M.D.2    Goodfellow, M.3
  • 17
    • 22544479477 scopus 로고    scopus 로고
    • Alkalibacterium iburiense sp. nov., an obligate alkaliphile that reduces an indigo dye
    • Nakajima, K., Hirota, K., Nodasaka, Y. & Yumoto, I. (2005). Alkalibacterium iburiense sp. nov., an obligate alkaliphile that reduces an indigo dye. Int J Syst Evol Microbiol 55, 1525-1530.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1525-1530
    • Nakajima, K.1    Hirota, K.2    Nodasaka, Y.3    Yumoto, I.4
  • 18
    • 47049115417 scopus 로고    scopus 로고
    • Oceanobacillus caeni sp. nov., isolated from a Bacillus-dominated wastewater treatment system in Korea
    • Nam, J.-H., Bae, W. & Lee, D.-H. (2008). Oceanobacillus caeni sp. nov., isolated from a Bacillus-dominated wastewater treatment system in Korea. Int J Syst Evol Microbiol 58, 1109-1113.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 1109-1113
    • Nam, J.-H.1    Bae, W.2    Lee, D.-H.3
  • 19
    • 70350491042 scopus 로고    scopus 로고
    • Oceanobacillus kapialis sp. nov., from fermented shrimp paste in Thailand
    • Namwong, S., Tanasupawat, S., Lee, K. C. & Lee, J.-S. (2009). Oceanobacillus kapialis sp. nov., from fermented shrimp paste in Thailand. Int J Syst Evol Microbiol 59, 2254-2259.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 2254-2259
    • Namwong, S.1    Tanasupawat, S.2    Lee, K.C.3    Lee, J.-S.4
  • 20
    • 33847309504 scopus 로고    scopus 로고
    • Oceanobacillus chironomi sp. nov., a halotolerant and facultatively alkaliphilic species isolated from a chironomid egg mass
    • Raats, D. & Halpern, M. (2007). Oceanobacillus chironomi sp. nov., a halotolerant and facultatively alkaliphilic species isolated from a chironomid egg mass. Int J Syst Evol Microbiol 57, 255-259.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 255-259
    • Raats, D.1    Halpern, M.2
  • 21
    • 33646239830 scopus 로고    scopus 로고
    • Oceanobacillus oncorhynchi subsp. incaldanensis subsp. nov., an alkalitolerant halophile isolated from an algal mat collected from a sulfurous spring in Campania (Italy), and emended description of Oceanobacillus oncorhynchi
    • Romano, I., Lama, L., Nicolaus, B., Poli, A., Gambacorta, A. & Giordano, A. (2006). Oceanobacillus oncorhynchi subsp. incaldanensis subsp. nov., an alkalitolerant halophile isolated from an algal mat collected from a sulfurous spring in Campania (Italy), and emended description of Oceanobacillus oncorhynchi. Int J Syst Evol Microbiol 56, 805-810.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 805-810
    • Romano, I.1    Lama, L.2    Nicolaus, B.3    Poli, A.4    Gambacorta, A.5    Giordano, A.6
  • 22
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 23
    • 0016202002 scopus 로고
    • Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography
    • Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
    • (1974) Appl Microbiol , vol.28 , pp. 226-231
    • Staneck, J.L.1    Roberts, G.D.2
  • 24
    • 0021715576 scopus 로고
    • Determination of DNA base composition by reversed-phase high-performance liquid chromatography
    • Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
    • (1984) FEMS Microbiol Lett , vol.25 , pp. 125-128
    • Tamaoka, J.1    Komagata, K.2
  • 25
    • 79957613599 scopus 로고    scopus 로고
    • mega5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 26
    • 0020032328 scopus 로고
    • Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen
    • Teather, R. M. & Wood, P. J. (1982). Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl Environ Microbiol 43, 777-780.
    • (1982) Appl Environ Microbiol , vol.43 , pp. 777-780
    • Teather, R.M.1    Wood, P.J.2
  • 27
    • 0027968068 scopus 로고
    • clustal w: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 28
    • 67749086690 scopus 로고    scopus 로고
    • Oceanobacillus soja sp. nov. isolated from soy sauce production equipment in Japan
    • Tominaga, T., An, S.-Y., Oyaizu, H. & Yokota, A. (2009). Oceanobacillus soja sp. nov. isolated from soy sauce production equipment in Japan. J Gen Appl Microbiol 55, 225-232.
    • (2009) J Gen Appl Microbiol , vol.55 , pp. 225-232
    • Tominaga, T.1    An, S.-Y.2    Oyaizu, H.3    Yokota, A.4
  • 29
    • 77954021306 scopus 로고    scopus 로고
    • Oceanobacillus manasiensis sp. nov., a moderately halophilic bacterium isolated from the salt lakes of Xinjiang, China
    • Wang, L., Liu, W.-Y., Gu, Z.-J., Chen, S.-F. & Yang, S.-S. (2010). Oceanobacillus manasiensis sp. nov., a moderately halophilic bacterium isolated from the salt lakes of Xinjiang, China. J Microbiol 48, 312-317.
    • (2010) J Microbiol , vol.48 , pp. 312-317
    • Wang, L.1    Liu, W.-Y.2    Gu, Z.-J.3    Chen, S.-F.4    Yang, S.-S.5
  • 30
    • 78651305252 scopus 로고    scopus 로고
    • Oceanobacillus kimchii sp. nov. isolated from a traditional Korean fermented food
    • Whon, T. W., Jung, M.-J., Roh, S. W., Nam, Y. D., Park, E.-J., Shin, K.-S. & Bae, J.-W. (2010). Oceanobacillus kimchii sp. nov. isolated from a traditional Korean fermented food. J Microbiol 48, 862-866.
    • (2010) J Microbiol , vol.48 , pp. 862-866
    • Whon, T.W.1    Jung, M.-J.2    Roh, S.W.3    Nam, Y.D.4    Park, E.-J.5    Shin, K.-S.6    Bae, J.-W.7
  • 31
    • 78049380374 scopus 로고    scopus 로고
    • Oceanobacillus neutriphilus sp. nov., isolated from activated sludge in a bioreactor
    • Yang, J.-Y., Huo, Y.-Y., Xu, X.-W., Meng, F.-X., Wu, M. & Wang, C.-S. (2010). Oceanobacillus neutriphilus sp. nov., isolated from activated sludge in a bioreactor. Int J Syst Evol Microbiol 60, 2409-2414.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 2409-2414
    • Yang, J.-Y.1    Huo, Y.-Y.2    Xu, X.-W.3    Meng, F.-X.4    Wu, M.5    Wang, C.-S.6
  • 35
    • 9744244884 scopus 로고    scopus 로고
    • Alkalibacterium psychrotolerans sp. nov., a psychrotolerant obligate alkaliphile that reduces an indigo dye
    • Yumoto, I., Hirota, K., Nodasaka, Y., Yokota, Y., Hoshino, T. & Nakajima, K. (2004). Alkalibacterium psychrotolerans sp. nov., a psychrotolerant obligate alkaliphile that reduces an indigo dye. Int J Syst Evol Microbiol 54, 2379-2383.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2379-2383
    • Yumoto, I.1    Hirota, K.2    Nodasaka, Y.3    Yokota, Y.4    Hoshino, T.5    Nakajima, K.6
  • 36
    • 22644439547 scopus 로고    scopus 로고
    • Oceanobacillus oncorhynchi sp. nov., a halotolerant obligate alkaliphile isolated from the skin of a rainbow trout (Oncorhynchus mykiss), and emended description of the genus Oceanobacillus
    • Yumoto, I., Hirota, K., Nodasaka, Y. & Nakajima, K. (2005). Oceanobacillus oncorhynchi sp. nov., a halotolerant obligate alkaliphile isolated from the skin of a rainbow trout (Oncorhynchus mykiss), and emended description of the genus Oceanobacillus. Int J Syst Evol Microbiol 55, 1521-1524.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1521-1524
    • Yumoto, I.1    Hirota, K.2    Nodasaka, Y.3    Nakajima, K.4
  • 37
    • 47249108994 scopus 로고    scopus 로고
    • Alkalibacterium indicireducens sp. nov., an obligate alkaliphile that reduces indigo dye
    • Yumoto, I., Hirota, K., Nodasaka, Y., Tokiwa, Y. & Nakajima, K. (2008). Alkalibacterium indicireducens sp. nov., an obligate alkaliphile that reduces indigo dye. Int J Syst Evol Microbiol 58, 901-905.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 901-905
    • Yumoto, I.1    Hirota, K.2    Nodasaka, Y.3    Tokiwa, Y.4    Nakajima, K.5


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