-
1
-
-
84861826804
-
Histidine kinases and response regulators in networks
-
Jung, K., Fried, L., Behr, S. and Heermann, R. (2012) Histidine kinases and response regulators in networks. Curr. Opin. Microbiol., 15, 118-124.
-
(2012)
Curr. Opin. Microbiol.
, vol.15
, pp. 118-124
-
-
Jung, K.1
Fried, L.2
Behr, S.3
Heermann, R.4
-
2
-
-
79959784386
-
Structure of the response regulator PhoP from Mycobacterium tuberculosis reveals a dimer through the receiver domain
-
Menon, S. and Wang, S. (2011) Structure of the response regulator PhoP from Mycobacterium tuberculosis reveals a dimer through the receiver domain. Biochemistry, 50, 5948-5957.
-
(2011)
Biochemistry
, vol.50
, pp. 5948-5957
-
-
Menon, S.1
Wang, S.2
-
3
-
-
0038154011
-
Structural analysis of the domain interface in DrrB, a response regulator of the OmpR/PhoB subfamily
-
Robinson, V.L., Wu, T. and Stock, A.M. (2003) Structural analysis of the domain interface in DrrB, a response regulator of the OmpR/PhoB subfamily. J. Bacteriol., 185, 4186-4194.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 4186-4194
-
-
Robinson, V.L.1
Wu, T.2
Stock, A.M.3
-
4
-
-
34250177264
-
Domain orientation in the inactive response regulator Mycobacterium tuberculosis MtrA provides a barrier to activation
-
Friedland, N., Mack, T.R., Yu, M., Hung, L.W., Terwilliger, T.C., Waldo, G.S. and Stock, A.M. (2007) Domain orientation in the inactive response regulator Mycobacterium tuberculosis MtrA provides a barrier to activation. Biochemistry, 46, 6733-6743.
-
(2007)
Biochemistry
, vol.46
, pp. 6733-6743
-
-
Friedland, N.1
MacK, T.R.2
Yu, M.3
Hung, L.W.4
Terwilliger, T.C.5
Waldo, G.S.6
Stock, A.M.7
-
5
-
-
84866351420
-
Structural insights into the regulatory mechanism of the response regulator RocR from Pseudomonas aeruginosa in cyclic Di-GMP signaling
-
Chen, M.W., Kotaka, M., Vonrhein, C., Bricogne, G., Rao, F., Chuah, M.L., Svergun, D., Schneider, G., Liang, Z.X. and Lescar, J. (2012) Structural insights into the regulatory mechanism of the response regulator RocR from Pseudomonas aeruginosa in cyclic Di-GMP signaling. J. Bacteriol., 194, 4837-4846.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 4837-4846
-
-
Chen, M.W.1
Kotaka, M.2
Vonrhein, C.3
Bricogne, G.4
Rao, F.5
Chuah, M.L.6
Svergun, D.7
Schneider, G.8
Liang, Z.X.9
Lescar, J.10
-
6
-
-
34547104863
-
Structure of an atypical orphan response regulator protein supports a new phosphorylation-independent regulatory mechanism
-
Hong, E., Lee, H.M., Ko, H., Kim, D.U., Jeon, B.Y., Jung, J., Shin, J., Lee, S.A., Kim, Y., Jeon, Y.H. et al. (2007) Structure of an atypical orphan response regulator protein supports a new phosphorylation-independent regulatory mechanism. J. Biol. Chem., 282, 20667-20675.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 20667-20675
-
-
Hong, E.1
Lee, H.M.2
Ko, H.3
Kim, D.U.4
Jeon, B.Y.5
Jung, J.6
Shin, J.7
Lee, S.A.8
Kim, Y.9
Jeon, Y.H.10
-
7
-
-
76749083886
-
Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP
-
Krasteva, P.V., Fong, J.C., Shikuma, N.J., Beyhan, S., Navarro, M.V., Yildiz, F.H. and Sondermann, H. (2010) Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP. Science (New York, N.Y.), 327, 866-868.
-
(2010)
Science (New York, N.Y.)
, vol.327
, pp. 866-868
-
-
Krasteva, P.V.1
Fong, J.C.2
Shikuma, N.J.3
Beyhan, S.4
Navarro, M.V.5
Yildiz, F.H.6
Sondermann, H.7
-
8
-
-
84878143682
-
Phosphorylation-dependent conformational changes and domain rearrangements in Staphylococcus aureus VraR activation
-
Leonard, P.G., Golemi-Kotra, D. and Stock, A.M. (2013) Phosphorylation-dependent conformational changes and domain rearrangements in Staphylococcus aureus VraR activation. Proc. Natl Acad. Sci. USA, 110, 8525-8530.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 8525-8530
-
-
Leonard, P.G.1
Golemi-Kotra, D.2
Stock, A.M.3
-
9
-
-
34547659282
-
Structure of BeF3-modified response regulator PleD: Implications for diguanylate cyclase activation, catalysis, and feedback inhibition
-
Wassmann, P., Chan, C., Paul, R., Beck, A., Heerklotz, H., Jenal, U. and Schirmer, T. (2007) Structure of BeF3-modified response regulator PleD: implications for diguanylate cyclase activation, catalysis, and feedback inhibition. Structure (London, England: 1993), 15, 915-927.
-
(2007)
Structure (London, England: 1993)
, vol.15
, pp. 915-927
-
-
Wassmann, P.1
Chan, C.2
Paul, R.3
Beck, A.4
Heerklotz, H.5
Jenal, U.6
Schirmer, T.7
-
10
-
-
0028955458
-
Response regulators of bacterial signal transduction systems: Selective domain shuffling during evolution
-
Pao, G.M. and Saier, M.H. Jr. (1995) Response regulators of bacterial signal transduction systems: selective domain shuffling during evolution. J. Mol. Evol., 40, 136-154.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 136-154
-
-
Pao, G.M.1
Saier, Jr.M.H.2
-
11
-
-
70349541000
-
Biological insights from structures of two-component proteins
-
Gao, R. and Stock, A.M. (2009) Biological insights from structures of two-component proteins. Ann. Rev. Microbiol., 63, 133-154.
-
(2009)
Ann. Rev. Microbiol.
, vol.63
, pp. 133-154
-
-
Gao, R.1
Stock, A.M.2
-
12
-
-
77949887724
-
Molecular strategies for phosphorylation-mediated regulation of response regulator activity
-
Gao, R. and Stock, A.M. (2010) Molecular strategies for phosphorylation-mediated regulation of response regulator activity. Curr. Opin. Microbiol., 13, 160-167.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 160-167
-
-
Gao, R.1
Stock, A.M.2
-
13
-
-
34250858152
-
Functional dynamics of response regulators using NMR relaxation techniques
-
Gardino, A.K. and Kern, D. (2007) Functional dynamics of response regulators using NMR relaxation techniques. Methods Enzymol., 423, 149-165.
-
(2007)
Methods Enzymol.
, vol.423
, pp. 149-165
-
-
Gardino, A.K.1
Kern, D.2
-
14
-
-
50049106044
-
System-level mapping of Escherichia coli response regulator dimerization with FRET hybrids
-
Gao, R., Tao, Y. and Stock, A.M. (2008) System-level mapping of Escherichia coli response regulator dimerization with FRET hybrids. Mol. Microbiol., 69, 1358-1372.
-
(2008)
Mol. Microbiol.
, vol.69
, pp. 1358-1372
-
-
Gao, R.1
Tao, Y.2
Stock, A.M.3
-
15
-
-
84857405884
-
Second monomer binding is the rate-limiting step in the formation of the dimeric PhoP-DNA complex
-
Singh, V., Ekka, M.K. and Kumaran, S. (2012) Second monomer binding is the rate-limiting step in the formation of the dimeric PhoP-DNA complex. Biochemistry, 51, 1346-1356.
-
(2012)
Biochemistry
, vol.51
, pp. 1346-1356
-
-
Singh, V.1
Ekka, M.K.2
Kumaran, S.3
-
16
-
-
0018606362
-
Competence for genetic transformation in pneumococcus depends on synthesis of a small set of proteins
-
Morrison, D.A. and Baker, M.F. (1979) Competence for genetic transformation in pneumococcus depends on synthesis of a small set of proteins. Nature, 282, 215-217.
-
(1979)
Nature
, vol.282
, pp. 215-217
-
-
Morrison, D.A.1
Baker, M.F.2
-
17
-
-
0013887380
-
Model for the mechanism controlling the expression of competent state in Pneumococcus cultures
-
Tomasz, A. (1966) Model for the mechanism controlling the expression of competent state in Pneumococcus cultures. J. Bacteriol., 91, 1050-1061.
-
(1966)
J. Bacteriol.
, vol.91
, pp. 1050-1061
-
-
Tomasz, A.1
-
18
-
-
46449102700
-
The Streptococcus pneumoniae competence regulatory system influences respiratory tract colonization
-
Kowalko, J.E. and Sebert, M.E. (2008) The Streptococcus pneumoniae competence regulatory system influences respiratory tract colonization. Infect. Immun., 76, 3131-3140.
-
(2008)
Infect. Immun.
, vol.76
, pp. 3131-3140
-
-
Kowalko, J.E.1
Sebert, M.E.2
-
19
-
-
34447093989
-
Modeling the regulation of the competence-evoking quorum sensing network in Streptococcus pneumoniae
-
Karlsson, D., Karlsson, S., Gustafsson, E., Normark, B.H. and Nilsson, P. (2007) Modeling the regulation of the competence-evoking quorum sensing network in Streptococcus pneumoniae. Biol. Syst., 90, 211-223.
-
(2007)
Biol. Syst.
, vol.90
, pp. 211-223
-
-
Karlsson, D.1
Karlsson, S.2
Gustafsson, E.3
Normark, B.H.4
Nilsson, P.5
-
20
-
-
0029781001
-
Identification of the streptococcal competence-pheromone receptor
-
Havarstein, L.S., Gaustad, P., Nes, I.F. and Morrison, D.A. (1996) Identification of the streptococcal competence-pheromone receptor. Mol. Microbiol., 21, 863-869.
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 863-869
-
-
Havarstein, L.S.1
Gaustad, P.2
Nes, I.F.3
Morrison, D.A.4
-
21
-
-
0029745349
-
Regulation of competence for genetic transformation in Streptococcus pneumoniae by an auto-induced peptide pheromone and a two-component regulatory system
-
Pestova, E.V., Havarstein, L.S. and Morrison, D.A. (1996) Regulation of competence for genetic transformation in Streptococcus pneumoniae by an auto-induced peptide pheromone and a two-component regulatory system. Mol. Microbiol., 21, 853-862.
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 853-862
-
-
Pestova, E.V.1
Havarstein, L.S.2
Morrison, D.A.3
-
22
-
-
0028845364
-
An unmodified heptadecapeptide pheromone induces competence for genetic transformation in Streptococcus pneumoniae
-
Havarstein, L.S., Coomaraswamy, G. and Morrison, D.A. (1995) An unmodified heptadecapeptide pheromone induces competence for genetic transformation in Streptococcus pneumoniae. Proc. Natl Acad. Sci. USA, 92, 11140-11144.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 11140-11144
-
-
Havarstein, L.S.1
Coomaraswamy, G.2
Morrison, D.A.3
-
23
-
-
0028894290
-
Competence for genetic transformation in Streptococcus pneumoniae: Organization of a regulatory locus with homology to two lactococcin A secretion genes
-
Hui, F.M., Zhou, L. and Morrison, D.A. (1995) Competence for genetic transformation in Streptococcus pneumoniae: organization of a regulatory locus with homology to two lactococcin A secretion genes. Gene, 153, 25-31.
-
(1995)
Gene
, vol.153
, pp. 25-31
-
-
Hui, F.M.1
Zhou, L.2
Morrison, D.A.3
-
24
-
-
0032790625
-
Identification of DNA binding sites for ComE, a key regulator of natural competence in Streptococcus pneumoniae
-
Ween, O., Gaustad, P. and Havarstein, L.S. (1999) Identification of DNA binding sites for ComE, a key regulator of natural competence in Streptococcus pneumoniae. Mol. Microbiol., 33, 817-827.
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 817-827
-
-
Ween, O.1
Gaustad, P.2
Havarstein, L.S.3
-
25
-
-
16544367143
-
Extracellular-peptide control of competence for genetic transformation in Streptococcus pneumoniae
-
Claverys, J.P. and Havarstein, L.S. (2002) Extracellular-peptide control of competence for genetic transformation in Streptococcus pneumoniae. Front. Biosci., 7, D1798-D1814.
-
(2002)
Front. Biosci.
, vol.7
-
-
Claverys, J.P.1
Havarstein, L.S.2
-
26
-
-
33746320813
-
Induction of competence regulons as a general response to stress in gram-positive bacteria
-
Claverys, J.P., Prudhomme, M. and Martin, B. (2006) Induction of competence regulons as a general response to stress in gram-positive bacteria. Ann. Rev. Microbiol., 60, 451-475.
-
(2006)
Ann. Rev. Microbiol.
, vol.60
, pp. 451-475
-
-
Claverys, J.P.1
Prudhomme, M.2
Martin, B.3
-
27
-
-
84872388512
-
ComE/ComE~P interplay dictates activation or extinction status of pneumococcal X-state (competence)
-
Martin, B., Soulet, A.L., Mirouze, N., Prudhomme, M., Mortier-Barriere, I., Granadel, C, Noirot-Gros, M.F., Noirot, P., Polard, P. and Claverys, J.P. (2013) ComE/ComE~P interplay dictates activation or extinction status of pneumococcal X-state (competence). Mol. Microbiol., 87, 394-411.
-
(2013)
Mol. Microbiol.
, vol.87
, pp. 394-411
-
-
Martin, B.1
Soulet, A.L.2
Mirouze, N.3
Prudhomme, M.4
Mortier-Barriere, I.5
Granadel, C.6
Noirot-Gros, M.F.7
Noirot, P.8
Polard, P.9
Claverys, J.P.10
-
28
-
-
0032816642
-
Identification of a new regulator in Streptococcus pneumoniae linking quorum sensing to competence for genetic transformation
-
Lee, M.S. and Morrison, D.A. (1999) Identification of a new regulator in Streptococcus pneumoniae linking quorum sensing to competence for genetic transformation. J. Bacteriol., 181, 5004-5016.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 5004-5016
-
-
Lee, M.S.1
Morrison, D.A.2
-
29
-
-
0033859371
-
Regulation of competence for genetic transformation in Streptococcus pneumoniae: A link between quorum sensing and DNA processing genes
-
Morrison, D.A. and Lee, M.S. (2000) Regulation of competence for genetic transformation in Streptococcus pneumoniae: a link between quorum sensing and DNA processing genes. Res. Microbiol., 151, 445-451.
-
(2000)
Res. Microbiol.
, vol.151
, pp. 445-451
-
-
Morrison, D.A.1
Lee, M.S.2
-
30
-
-
0037216807
-
Transient association of an alternative sigma factor, ComX, with RNA polymerase during the period of competence for genetic transformation in Streptococcus pneumoniae
-
Luo, P. and Morrison, DA. (2003) Transient association of an alternative sigma factor, ComX, with RNA polymerase during the period of competence for genetic transformation in Streptococcus pneumoniae. J. Bacteriol., 185, 349-358.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 349-358
-
-
Luo, P.1
Morrison, D.A.2
-
31
-
-
0142093595
-
ComX is a unique link between multiple quorum sensing outputs and competence in Streptococcus pneumoniae
-
Luo, P., Li, H. and Morrison, DA. (2003) ComX is a unique link between multiple quorum sensing outputs and competence in Streptococcus pneumoniae. Mol. Microbiol., 50, 623-633.
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 623-633
-
-
Luo, P.1
Li, H.2
Morrison, D.A.3
-
32
-
-
22144490482
-
Transformation proteins and DNA uptake localize to the cell poles in Bacillus subtilis
-
Hahn, J., Maier, B., Haijema, B.J., Sheetz, M. and Dubnau, D. (2005) Transformation proteins and DNA uptake localize to the cell poles in Bacillus subtilis. Cell, 122, 59-71.
-
(2005)
Cell
, vol.122
, pp. 59-71
-
-
Hahn, J.1
Maier, B.2
Haijema, B.J.3
Sheetz, M.4
Dubnau, D.5
-
33
-
-
64349108725
-
The genetic transformation machinery: Composition, localization, and mechanism
-
Claverys, J.P., Martin, B. and Polard, P. (2009) The genetic transformation machinery: composition, localization, and mechanism. FEMS Microbiol. Rev., 33, 643-656.
-
(2009)
FEMS Microbiol. Rev.
, vol.33
, pp. 643-656
-
-
Claverys, J.P.1
Martin, B.2
Polard, P.3
-
34
-
-
34447325120
-
A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA
-
Mortier-Barriere, I., Velten, M., Dupaigne, P., Mirouze, N, Pietrement, O., McGovern, S., Fichant, G., Martin, B., Noirot, P., Le Cam, E. et al. (2007) A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA. Cell, 130, 824-836.
-
(2007)
Cell
, vol.130
, pp. 824-836
-
-
Mortier-Barriere, I.1
Velten, M.2
Dupaigne, P.3
Mirouze, N.4
Pietrement, O.5
McGovern, S.6
Fichant, G.7
Martin, B.8
Noirot, P.9
Le Cam, E.10
-
35
-
-
84866295476
-
Structure-function analysis of pneumococcal DprA protein reveals that dimerization is crucial for loading RecA recombinase onto DNA during transformation
-
Quevillon-Cheruel, S., Campo, N, Mirouze, N, Mortier-Barriere, I., Brooks, MA., Boudes, M., Durand, D., Soulet, A.L., Lisboa, J., Noirot, P. et al. (2012) Structure-function analysis of pneumococcal DprA protein reveals that dimerization is crucial for loading RecA recombinase onto DNA during transformation. Proc. Natl Acad. Sci. USA, 109, E2466-E2475.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
-
-
Quevillon-Cheruel, S.1
Campo, N.2
Mirouze, N.3
Mortier-Barriere, I.4
Brooks, M.A.5
Boudes, M.6
Durand, D.7
Soulet, A.L.8
Lisboa, J.9
Noirot, P.10
-
36
-
-
64349102078
-
Regulation of natural genetic transformation and acquisition of transforming DNA in Streptococcus pneumoniae
-
Johnsborg, O. and Havarstein, L.S. (2009) Regulation of natural genetic transformation and acquisition of transforming DNA in Streptococcus pneumoniae. FEMS Microbiol. Rev., 33, 627-642.
-
(2009)
FEMS Microbiol. Rev.
, vol.33
, pp. 627-642
-
-
Johnsborg, O.1
Havarstein, L.S.2
-
37
-
-
77949384927
-
Expression and maintenance of ComD-ComE, the two-component signal-transduction system that controls competence of Streptococcus pneumoniae
-
Martin, B., Granadel, C, Campo, N, Henard, V., Prudhomme, M. and Claverys, J.P. (2010) Expression and maintenance of ComD-ComE, the two-component signal-transduction system that controls competence of Streptococcus pneumoniae. Mol. Microbiol., 75, 1513-1528.
-
(2010)
Mol. Microbiol.
, vol.75
, pp. 1513-1528
-
-
Martin, B.1
Granadel, C.2
Campo, N.3
Henard, V.4
Prudhomme, M.5
Claverys, J.P.6
-
38
-
-
84875034539
-
Direct involvement of DprA, the transformation-dedicated RecA loader, in the shut-off of pneumococcal competence
-
Mirouze, N, Berge, MA., Soulet, A.L., Mortier-Barriere, I., Quentin, Y., Fichant, G, Granadel, C, Noirot-Gros, M.F., Noirot, P., Polard, P. et al. (2013) Direct involvement of DprA, the transformation-dedicated RecA loader, in the shut-off of pneumococcal competence. Proc. Natl Acad. Sci. USA, 110, E1035-E1044.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
-
-
Mirouze, N.1
Berge, M.A.2
Soulet, A.L.3
Mortier-Barriere, I.4
Quentin, Y.5
Fichant, G.6
Granadel, C.7
Noirot-Gros, M.F.8
Noirot, P.9
Polard, P.10
-
39
-
-
0036606155
-
A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family
-
Nikolskaya, A.N. and Galperin, M.Y. (2002) A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family. Nucleic Acids Res., 30, 2453-2459.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 2453-2459
-
-
Nikolskaya, A.N.1
Galperin, M.Y.2
-
40
-
-
79960398983
-
Characterization of DNA binding sites of the ComE response regulator from Streptococcus mutans
-
Hung, D.C, Downey, J.S., Ayala, EA., Kreth, J., Mair, R., Senadheera, D.B., Qi, F., Cvitkovitch, D.G, Shi, W. and Goodman, S.D. (2011) Characterization of DNA binding sites of the ComE response regulator from Streptococcus mutans. J. Bacteriol., 193, 3642-3652.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 3642-3652
-
-
Hung, D.C.1
Downey, J.S.2
Ayala, E.A.3
Kreth, J.4
Mair, R.5
Senadheera, D.B.6
Qi, F.7
Cvitkovitch, D.G.8
Shi, W.9
Goodman, S.D.10
-
41
-
-
0031772391
-
Bacterial gene transfer by natural genetic transformation
-
Havarstein, L.S. (1998) Bacterial gene transfer by natural genetic transformation. APMIS Suppl., 84, 43-46.
-
(1998)
APMIS Suppl.
, vol.84
, pp. 43-46
-
-
Havarstein, L.S.1
-
42
-
-
0033637808
-
Cross-regulation of competence pheromone production and export in the early control of transformation in Streptococcus pneumoniae
-
Martin, B., Prudhomme, M., Alloing, G, Granadel, C. and Claverys, J.P. (2000) Cross-regulation of competence pheromone production and export in the early control of transformation in Streptococcus pneumoniae. Mol. Microbiol., 38, 867-878.
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 867-878
-
-
Martin, B.1
Prudhomme, M.2
Alloing, G.3
Granadel, C.4
Claverys, J.P.5
-
43
-
-
10744228370
-
Identification of competence pheromone responsive genes in Streptococcus pneumoniae by use of DNA microarrays
-
Peterson, S.N, Sung, C.K., Cline, R., Desai, B.V., Snesrud, E.C, Luo, P., Walling, J., Li, H., Mintz, M., Tsegaye, G et al. (2004) Identification of competence pheromone responsive genes in Streptococcus pneumoniae by use of DNA microarrays. Mol. Microbiol., 51, 1051-1070.
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 1051-1070
-
-
Peterson, S.N.1
Sung, C.K.2
Cline, R.3
Desai, B.V.4
Snesrud, E.C.5
Luo, P.6
Walling, J.7
Li, H.8
Mintz, M.9
Tsegaye, G.10
-
44
-
-
42949103706
-
Telling bacteria: Do not LytTR
-
Galperin, M.Y. (2008) Telling bacteria: do not LytTR. Structure, 16, 657-659.
-
(2008)
Structure
, vol.16
, pp. 657-659
-
-
Galperin, M.Y.1
-
45
-
-
42949179170
-
Structure of the Staphylococcus aureus AgrA LytTR domain bound to DNA reveals a beta fold with an unusual mode of binding
-
Sidote, D.J., Barbieri, C.M., Wu, T. and Stock, A.M. (2008) Structure of the Staphylococcus aureus AgrA LytTR domain bound to DNA reveals a beta fold with an unusual mode of binding. Structure (London, England: 1993), 16, 727-735.
-
(2008)
Structure (London, England: 1993)
, vol.16
, pp. 727-735
-
-
Sidote, D.J.1
Barbieri, C.M.2
Wu, T.3
Stock, A.M.4
-
46
-
-
84871325229
-
Identification of a hydrophobic cleft in the LytTR domain of AgrA as a locus for small molecule interactions that inhibit DNA binding
-
Leonard, P.G., Bezar, I.F., Sidote, D.J. and Stock, A.M. (2012) Identification of a hydrophobic cleft in the LytTR domain of AgrA as a locus for small molecule interactions that inhibit DNA binding. Biochemistry, 51, 10035-10043.
-
(2012)
Biochemistry
, vol.51
, pp. 10035-10043
-
-
Leonard, P.G.1
Bezar, I.F.2
Sidote, D.J.3
Stock, A.M.4
-
47
-
-
0031860811
-
Chaperone coexpression plasmids: Differential and synergistic roles of DnaK-DnaJ-GrpE and GroEL-GroES in assisting folding of an allergen of Japanese cedar pollen, Cryj2, in Escherichia coli
-
Nishihara, K., Kanemori, M., Kitagawa, M., Yanagi, H. and Yura, T. (1998) Chaperone coexpression plasmids: differential and synergistic roles of DnaK-DnaJ-GrpE and GroEL-GroES in assisting folding of an allergen of Japanese cedar pollen, Cryj2, in Escherichia coli. Appl. Environ. Microbiol., 64, 1694-1699.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 1694-1699
-
-
Nishihara, K.1
Kanemori, M.2
Kitagawa, M.3
Yanagi, H.4
Yura, T.5
-
48
-
-
33847327055
-
Cloning, production, and purification of proteins for a medium-scale structural genomics project
-
Quevillon-Cheruel, S., Collinet, B., Tresaugues, L., Minard, P., Henckes, G., Aufrere, R., Blondeau, K., Zhou, C.Z., Liger, D., Bettache, N. et al. (2007) Cloning, production, and purification of proteins for a medium-scale structural genomics project. Methods Mol. Biol., 363, 21-37.
-
(2007)
Methods Mol. Biol.
, vol.363
, pp. 21-37
-
-
Quevillon-Cheruel, S.1
Collinet, B.2
Tresaugues, L.3
Minard, P.4
Henckes, G.5
Aufrere, R.6
Blondeau, K.7
Zhou, C.Z.8
Liger, D.9
Bettache, N.10
-
49
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch, W. (1993) Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallogr., 26, 795-800.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
50
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A.J., Grosse-Kunstleve, R.W., Adams, P.D., Winn, M.D., Storoni, L.C. and Read, R.J. (2007) Phaser crystallographic software. J. Appl. Crystallogr., 40, 658-674.
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
51
-
-
0028486194
-
Structure of ribonucleotide reductase protein R1
-
Uhlin, U. and Eklund, H. (1994) Structure of ribonucleotide reductase protein R1. Nature, 370, 533-539.
-
(1994)
Nature
, vol.370
, pp. 533-539
-
-
Uhlin, U.1
Eklund, H.2
-
52
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G.N., Vagin, A.A. and Dodson, E.J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta. Crystallogr. D Biol. Crystallogr., 53, 240-255.
-
(1997)
Acta. Crystallogr. D Biol. Crystallogr.
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
54
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
Adams, P.D., Grosse-Kunstleve, R.W., Hung, L.W., Ioerger, T.R., McCoy, A.J., Moriarty, N.W., Read, R.J., Sacchettini, J.C., Sauter, N.K. and Terwilliger, T.C. (2002) PHENIX: building new software for automated crystallographic structure determination. Acta. Crystallogr. D Biol. Crystallogr., 58, 1948-1954.
-
(2002)
Acta. Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
55
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V.B., Arendall, W.B. 3rd, Headd, J.J., Keedy, D.A., Immormino, R.M., Kapral, G.J., Murray, L.W., Richardson, J.S. and Richardson, D.C. (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta. Crystallogr. D Biol. Crystallogr., 66, 12-21.
-
(2010)
Acta. Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall III, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
57
-
-
0242460576
-
Generation, representation and flow of phase information in structure determination: Recent developments in and around SHARP 2.0
-
Bricogne, G., Vonrhein, C., Flensburg, C., Schiltz, M. and Paciorek, W. (2003) Generation, representation and flow of phase information in structure determination: recent developments in and around SHARP 2.0. Acta. Crystallogr. D Biol. Crystallogr., 59, 2023-2030.
-
(2003)
Acta. Crystallogr. D Biol. Crystallogr.
, vol.59
, pp. 2023-2030
-
-
Bricogne, G.1
Vonrhein, C.2
Flensburg, C.3
Schiltz, M.4
Paciorek, W.5
-
59
-
-
37349110734
-
Fitting molecular fragments into electron density
-
Cowtan, K. (2008) Fitting molecular fragments into electron density. Acta. Crystallogr. D Biol. Crystallogr., 64, 83-89.
-
(2008)
Acta. Crystallogr. D Biol. Crystallogr.
, vol.64
, pp. 83-89
-
-
Cowtan, K.1
-
60
-
-
77957946297
-
-
Global Phasing Ltd, Cambridge, United Kingdom
-
Bricogne, G., Blanc, E., Brandl, M., Flensburg, C., Keller, P., Paciorek, W., Roversi, P., Sharff, A., Smart, O.S., Vonrhein, C. et al. (2011) BUSTER version 2.10.0. Global Phasing Ltd, Cambridge, United Kingdom.
-
(2011)
BUSTER Version 2.10.0
-
-
Bricogne, G.1
Blanc, E.2
Brandl, M.3
Flensburg, C.4
Keller, P.5
Paciorek, W.6
Roversi, P.7
Sharff, A.8
Smart, O.S.9
Vonrhein, C.10
-
61
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L. and Rosenstrom, P. (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res., 38, W545-W549.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Holm, L.1
Rosenstrom, P.2
-
62
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Zhang, Y. (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9, 40.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 40
-
-
Zhang, Y.1
-
63
-
-
32144432437
-
The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
-
Arnold, K., Bordoli, L., Kopp, J. and Schwede, T. (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics, 22, 195-201.
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
65
-
-
70349316826
-
Combined sampler robot and HPLC: A fully automated system for biological SAXS experiments at the Synchrotron SOLEIL Swing beamline
-
David, G. and Perez, J. (2009) Combined sampler robot and HPLC: a fully automated system for biological SAXS experiments at the Synchrotron SOLEIL Swing beamline. J. Appl. Cryst., 42, 892-900.
-
(2009)
J. Appl. Cryst.
, vol.42
, pp. 892-900
-
-
David, G.1
Perez, J.2
-
66
-
-
33645214738
-
ATSAS 2.1, a program package for small-angle scattering data analysis
-
Konarev, P.V., Petoukhov, M.V., Volkov, V.V. and Svergun, D.I. (2006) ATSAS 2.1, a program package for small-angle scattering data analysis. J. Appl. Cryst., 39, 277-286.
-
(2006)
J. Appl. Cryst.
, vol.39
, pp. 277-286
-
-
Konarev, P.V.1
Petoukhov, M.V.2
Volkov, V.V.3
Svergun, D.I.4
-
67
-
-
75649147383
-
Determination of the molecular weight of proteins in solution from a single small-angle X-ray scattering measurement on a relative scale
-
Fisher, H., de Oliveira Neto, M., Napolitano, H.B., Polikarpov, I. and Craievich, A.F. (2010) Determination of the molecular weight of proteins in solution from a single small-angle X-ray scattering measurement on a relative scale. J. Appl. Cryst., 43, 101-109.
-
(2010)
J. Appl. Cryst.
, vol.43
, pp. 101-109
-
-
Fisher, H.1
De Oliveira Neto, M.2
Napolitano, H.B.3
Polikarpov, I.4
Craievich, A.F.5
-
68
-
-
23244455562
-
Global rigid body modeling of macromolecular complexes against small-angle scattering data
-
Petoukhov, M.V. and Svergun, D.I. (2005) Global rigid body modeling of macromolecular complexes against small-angle scattering data. Biophys. J., 89, 1237-1250.
-
(2005)
Biophys. J.
, vol.89
, pp. 1237-1250
-
-
Petoukhov, M.V.1
Svergun, D.I.2
-
69
-
-
34247891557
-
Structural characterization of flexible proteins using small-angle X-ray scattering
-
Bernado, P., Mylonas, E., Petoukhov, M.V., Blackledge, M. and Svergun, D.I. (2007) Structural characterization of flexible proteins using small-angle X-ray scattering. J. Am. Chem. Soc., 129, 5656-5664.
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 5656-5664
-
-
Bernado, P.1
Mylonas, E.2
Petoukhov, M.V.3
Blackledge, M.4
Svergun, D.I.5
-
70
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel, E. and Henrick, K. (2007) Inference of macromolecular assemblies from crystalline state. J. Mol. Biol., 372, 774-797.
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
71
-
-
24344476732
-
Mechanism of activation for transcription factor PhoB suggested by different modes of dimerization in the inactive and active states
-
Bachhawat, P., Swapna, G.V., Montelione, G.T. and Stock, A.M. (2005) Mechanism of activation for transcription factor PhoB suggested by different modes of dimerization in the inactive and active states. Structure, 13, 1353-1363.
-
(2005)
Structure
, vol.13
, pp. 1353-1363
-
-
Bachhawat, P.1
Swapna, G.V.2
Montelione, G.T.3
Stock, A.M.4
-
72
-
-
0033573063
-
Conformational changes induced by phosphorylation of the FixJ receiver domain
-
Birck, C., Mourey, L., Gouet, P., Fabry, B., Schumacher, J., Rousseau, P., Kahn, D. and Samama, J.P. (1999) Conformational changes induced by phosphorylation of the FixJ receiver domain. Structure (London, England: 1993), 7, 1505-1515.
-
(1999)
Structure (London, England: 1993)
, vol.7
, pp. 1505-1515
-
-
Birck, C.1
Mourey, L.2
Gouet, P.3
Fabry, B.4
Schumacher, J.5
Rousseau, P.6
Kahn, D.7
Samama, J.P.8
-
73
-
-
0344142378
-
Three-dimensional crystal structure of the transcription factor PhoB receiver domain
-
Sola, M., Gomis-Ruth, F.X., Serrano, L., Gonzalez, A. and Coll, M. (1999) Three-dimensional crystal structure of the transcription factor PhoB receiver domain. J. Mol. Biol., 285, 675-687.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 675-687
-
-
Sola, M.1
Gomis-Ruth, F.X.2
Serrano, L.3
Gonzalez, A.4
Coll, M.5
-
74
-
-
84857821852
-
Oligomerization of the response regulator ComE from Streptococcus mutans is affected by phosphorylation
-
Hung, D.C., Downey, J.S., Kreth, J., Qi, F., Shi, W., Cvitkovitch, D.G. and Goodman, S.D. (2012) Oligomerization of the response regulator ComE from Streptococcus mutans is affected by phosphorylation. J. Bacteriol., 194, 1127-1135.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 1127-1135
-
-
Hung, D.C.1
Downey, J.S.2
Kreth, J.3
Qi, F.4
Shi, W.5
Cvitkovitch, D.G.6
Goodman, S.D.7
-
75
-
-
77957820323
-
Regulation of response regulator autophosphorylation through interdomain contacts
-
Barbieri, C.M., Mack, T.R., Robinson, V.L., Miller, M.T. and Stock, A.M. (2010) Regulation of response regulator autophosphorylation through interdomain contacts. J. Biol. Chem., 285, 32325-32335.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 32325-32335
-
-
Barbieri, C.M.1
MacK, T.R.2
Robinson, V.L.3
Miller, M.T.4
Stock, A.M.5
|