-
1
-
-
0032739281
-
C-terminal DNA binding stimulates N-terminal phosphorylation of the outer membrane protein regulator OmpR from Escherichia coli
-
Ames, S. K., N. Frankema, and L. J. Kenney. 1999. C-terminal DNA binding stimulates N-terminal phosphorylation of the outer membrane protein regulator OmpR from Escherichia coli. Proc. Natl. Acad. Sci. USA 96:11792-11797.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 11792-11797
-
-
Ames, S.K.1
Frankema, N.2
Kenney, L.J.3
-
2
-
-
0344813718
-
NarL dimerization? Suggestive evidence from a new crystal form
-
Baikalov, I., I. Schröder, M. Kaczor-Grzeskowiak, D. Cascio, R. P. Gunsalus, and R. E. Dickerson. 1998. NarL dimerization? Suggestive evidence from a new crystal form. Biochemistry 37:3665-3676.
-
(1998)
Biochemistry
, vol.37
, pp. 3665-3676
-
-
Baikalov, I.1
Schröder, I.2
Kaczor-Grzeskowiak, M.3
Cascio, D.4
Gunsalus, R.P.5
Dickerson, R.E.6
-
3
-
-
0029736725
-
Structure of the Escherichia coli response regulator NarL
-
Baikalov, I., I. Schröder, M. Kaczor-Grzeskowiak, K. Grzeskowiak, R. P. Gunsalus, and R. E. Dickerson. 1996. Structure of the Escherichia coli response regulator NarL. Biochemistry 35:11053-11061.
-
(1996)
Biochemistry
, vol.35
, pp. 11053-11061
-
-
Baikalov, I.1
Schröder, I.2
Kaczor-Grzeskowiak, M.3
Grzeskowiak, K.4
Gunsalus, R.P.5
Dickerson, R.E.6
-
4
-
-
0037215598
-
The crystal structure of the phosphorylation domain in PhoP reveals a functional tandem association mediated by an asymmetric interface
-
Birck, C., Y. Chen, F. M. Hulett, and J. P. Samama. 2003. The crystal structure of the phosphorylation domain in PhoP reveals a functional tandem association mediated by an asymmetric interface. J. Bacteriol. 185:254-261.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 254-261
-
-
Birck, C.1
Chen, Y.2
Hulett, F.M.3
Samama, J.P.4
-
5
-
-
0036583638
-
Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator
-
Blanco, A. G., M. Sola, F. X. Gomis-Ruth, and M. Coll. 2002. Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator. Structure 10:701-713.
-
(2002)
Structure
, vol.10
, pp. 701-713
-
-
Blanco, A.G.1
Sola, M.2
Gomis-Ruth, F.X.3
Coll, M.4
-
6
-
-
0027275485
-
The winged-helix DNA-binding motif: Another helix-turn-helix takeoff
-
Brennan, R. G. 1993. The winged-helix DNA-binding motif: another helix-turn-helix takeoff. Cell 74:773-776.
-
(1993)
Cell
, vol.74
, pp. 773-776
-
-
Brennan, R.G.1
-
7
-
-
3543012707
-
Crystallography & NMR System: A new software suite for macromolecular structure determination
-
Brünger, A. T., P. D. Adams, G. M. Clore, W. L. DeLano, P. Gros, R. W. Grosse-Kunstleve, J. S. Jiang, J. Kuszewski, M. Nilges, N. S. Pannu, R. J. Read, L. M. Rice, T. Simonson, and G. L. Warren. 1998. Crystallography & NMR System: a new software suite for macromolecular structure determination. Acta Crystallogr. D 54:905-921.
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
8
-
-
0036174746
-
Evidence of intradomain and interdomain flexibility in an OmpR/PhoB homolog from Thermotoga maritima
-
Buckler, D. R., Y. Zhou, and A. M. Stock. 2002. Evidence of intradomain and interdomain flexibility in an OmpR/PhoB homolog from Thermotoga maritima. Structure 10:153-164.
-
(2002)
Structure
, vol.10
, pp. 153-164
-
-
Buckler, D.R.1
Zhou, Y.2
Stock, A.M.3
-
9
-
-
0027463760
-
Variation of half-site organization and DNA looping by AraC protein
-
Carra, J. H., and R. F. Schleif. 1993. Variation of half-site organization and DNA looping by AraC protein. EMBO J. 12:35-44.
-
(1993)
EMBO J.
, vol.12
, pp. 35-44
-
-
Carra, J.H.1
Schleif, R.F.2
-
10
-
-
0037215521
-
Residue R113 is essential for PhoP dimerization and function: A residue buried in the asymmetric PhoP dimer interface determined in the PhoPN three-dimensional crystal structure
-
Chen, Y., C. Birck, J. P. Samama, and F. M. Hulett. 2003. Residue R113 is essential for PhoP dimerization and function: a residue buried in the asymmetric PhoP dimer interface determined in the PhoPN three-dimensional crystal structure. J. Bacteriol. 185:262-273.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 262-273
-
-
Chen, Y.1
Birck, C.2
Samama, J.P.3
Hulett, F.M.4
-
11
-
-
0032539671
-
Structural basis for methylesterase CheB regulation by a phosphorylation-activated domain
-
Djordjevic, S., P. N. Goudreau, Q. Xu, A. M. Stock, and A. H. West. 1998. Structural basis for methylesterase CheB regulation by a phosphorylation-activated domain. Proc. Natl. Acad. Sci. USA 95:1381-1386.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1381-1386
-
-
Djordjevic, S.1
Goudreau, P.N.2
Xu, Q.3
Stock, A.M.4
West, A.H.5
-
12
-
-
0037168492
-
Effect of phosphorylation on the interdomain interaction of the response regulator
-
Eldridge, A. M., H. S. Kang, E. Johnson, R. Gunsalus, and F. W. Dahlquist. 2002. Effect of phosphorylation on the interdomain interaction of the response regulator, NarL. Biochemistry 41:15173-15180.
-
(2002)
NarL. Biochemistry
, vol.41
, pp. 15173-15180
-
-
Eldridge, A.M.1
Kang, H.S.2
Johnson, E.3
Gunsalus, R.4
Dahlquist, F.W.5
-
13
-
-
0034460872
-
The unphosphorylated receiver domain of PhoB silences the activity of its output domain
-
Ellison, D. W., and W. R. McCleary. 2000. The unphosphorylated receiver domain of PhoB silences the activity of its output domain. J. Bacteriol. 182:6592-6597.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 6592-6597
-
-
Ellison, D.W.1
McCleary, W.R.2
-
14
-
-
0029164694
-
A common switch in activation of the response regulators NtrC and PhoB: Phosphorylation induces dimerization of the receiver modules
-
Fiedler, U., and V. Weiss. 1995. A common switch in activation of the response regulators NtrC and PhoB: phosphorylation induces dimerization of the receiver modules. EMBO J. 14:3696-3705.
-
(1995)
EMBO J.
, vol.14
, pp. 3696-3705
-
-
Fiedler, U.1
Weiss, V.2
-
15
-
-
0038581544
-
-
Ph.D. dissertation. Rutgers, The State University of New Jersey, and Robert Wood Johnson Medical School, New Brunswick, N.J.
-
Harlocker, S. 1996. Characterization of the binding of OmpR, a transcription factor in Escherichia coli, to the upstream regulatory sequences of ompF. Ph.D. dissertation. Rutgers, The State University of New Jersey, and Robert Wood Johnson Medical School, New Brunswick, N.J.
-
(1996)
Characterization of the Binding of OmpR, a Transcription Factor in Escherichia coli, to the Upstream Regulatory Sequences of ompF
-
-
Harlocker, S.1
-
16
-
-
0028875660
-
Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli
-
Harlocker, S. L., L. Bergstrom, and M. Inouye. 1995. Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli. J. Biol. Chem. 270:26849-26856.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 26849-26856
-
-
Harlocker, S.L.1
Bergstrom, L.2
Inouye, M.3
-
17
-
-
0025262173
-
Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): A vehicle for direct determination of three-dimensional structure
-
Hendrickson, W. A., J. R. Horton, and D. M. LeMaster. 1990. Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure. EMBO J. 9:1665-1672.
-
(1990)
EMBO J
, vol.9
, pp. 1665-1672
-
-
Hendrickson, W.A.1
Horton, J.R.2
LeMaster, D.M.3
-
18
-
-
0035798619
-
Multimerization of phosphorylated and non-phosphorylated ArcA is necessary for the response regulator function of the Arc two-component signal transduction system
-
Jeon, Y., Y. S. Lee, J. S. Han, J. B. Kim, and D. S. Hwang. 2001. Multimerization of phosphorylated and non-phosphorylated ArcA is necessary for the response regulator function of the Arc two-component signal transduction system. J. Biol. Chem. 276:40873-40879.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 40873-40879
-
-
Jeon, Y.1
Lee, Y.S.2
Han, J.S.3
Kim, J.B.4
Hwang, D.S.5
-
20
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T. A., J. Y. Zou, S. W. Cowan, and M. Kjeldgaard. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47:110-119.
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
21
-
-
0024386847
-
Location of phosphorylation site and DNA-binding site of a positive regulator, OmpR, involved in activation of the osmoregulatory genes of Escherichia coli
-
Kato, M., H. Aiba, S. Tate, Y. Nishimura, and T. Mizuno. 1989. Location of phosphorylation site and DNA-binding site of a positive regulator, OmpR, involved in activation of the osmoregulatory genes of Escherichia coli. FEBS Lett. 249:168-172.
-
(1989)
FEBS Lett.
, vol.249
, pp. 168-172
-
-
Kato, M.1
Aiba, H.2
Tate, S.3
Nishimura, Y.4
Mizuno, T.5
-
22
-
-
0031027087
-
Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site
-
Kondo, H., A. Nakagawa, J. Nishihira, Y. Nishimura, T. Mizuno, and I. Tanaka. 1997. Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site. Nat. Struct. Biol. 4:28-31.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 28-31
-
-
Kondo, H.1
Nakagawa, A.2
Nishihira, J.3
Nishimura, Y.4
Mizuno, T.5
Tanaka, I.6
-
23
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., M. W. McArthur, D. S. Moss, and J. M. Thornton. 1993. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26:282-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 282-291
-
-
Laskowski, R.A.1
McArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
24
-
-
0030809030
-
Bacillus subtilis PhoP binds to the phoB tandem promoter exclusively within the phosphate starvation-inducible promoter
-
Liu, W., and F. M. Hulett. 1997. Bacillus subtilis PhoP binds to the phoB tandem promoter exclusively within the phosphate starvation-inducible promoter. J. Bacteriol. 179:6302-6310.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 6302-6310
-
-
Liu, W.1
Hulett, F.M.2
-
25
-
-
0029984838
-
DNA binding of PhoB and its interaction with RNA polymerase
-
Makino, K., M. Amemura, T. Kawamoto, S. Kimura, H. Shinagawa, A. Nakata, and M. Suzuki. 1996. DNA binding of PhoB and its interaction with RNA polymerase. J. Mol. Biol. 259:15-26.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 15-26
-
-
Makino, K.1
Amemura, M.2
Kawamoto, T.3
Kimura, S.4
Shinagawa, H.5
Nakata, A.6
Suzuki, M.7
-
26
-
-
0031568318
-
The DNA-binding domain of OmpR: Crystal structure of a winged-helix transcription factor
-
Martinez-Hackert, E., and A. M. Stock. 1997. The DNA-binding domain of OmpR: crystal structure of a winged-helix transcription factor. Structure 5:109-124.
-
(1997)
Structure
, vol.5
, pp. 109-124
-
-
Martinez-Hackert, E.1
Stock, A.M.2
-
27
-
-
0031566431
-
Structural relationships in the OmpR family of winged-helix transcription factors
-
Martinez-Hackert, E., and A. M. Stock. 1997. Structural relationships in the OmpR family of winged-helix transcription factors. J. Mol. Biol. 269:301-312.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 301-312
-
-
Martinez-Hackert, E.1
Stock, A.M.2
-
28
-
-
0037031925
-
The linker region plays an important role in the inter-domain communication of the response regulator OmpR
-
Mattison, K., R. Oropeza, and L. J. Kenney. 2002. The linker region plays an important role in the inter-domain communication of the response regulator OmpR. J. Biol. Chem. 277:32714-32721.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 32714-32721
-
-
Mattison, K.1
Oropeza, R.2
Kenney, L.J.3
-
29
-
-
0029896773
-
The activation of PhoB by acetylphosphate
-
McCleary, W. R. 1996. The activation of PhoB by acetylphosphate. Mol. Microbiol. 20:1155-1163.
-
(1996)
Mol. Microbiol.
, vol.20
, pp. 1155-1163
-
-
McCleary, W.R.1
-
30
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
-
Nelson, K. E., R. A. Clayton, S. R. Gill, M. L. Gwinn, R. J. Dodson, D. H. Haft, E. K. Hickey, J. D. Peterson, W. C. Nelson, K. A. Ketchum, L. McDonald, T. R. Utterback, J. A. Malek, K. D. Linher, M. M. Garrett, A. M. Stewart, M. D. Cotton, M. S. Pratt, C. A. Phillips, D. Richardson, J. Heidelberg, G. G. Sutton, R. D. Fleishmann, J. A. Eisen, O. White, S. L. Salzberg, H. O. Smith, J. C. Venter, and C. M. Fraser. 1999. Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima. Nature 399:323-329.
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Dodson, R.J.5
Haft, D.H.6
Hickey, E.K.7
Peterson, J.D.8
Nelson, W.C.9
Ketchum, K.A.10
McDonald, L.11
Utterback, T.R.12
Malek, J.A.13
Linher, K.D.14
Garrett, M.M.15
Stewart, A.M.16
Cotton, M.D.17
Pratt, M.S.18
Phillips, C.A.19
Richardson, D.20
Heidelberg, J.21
Sutton, G.G.22
Fleishmann, R.D.23
Eisen, J.A.24
White, O.25
Salzberg, S.L.26
Smith, H.O.27
Venter, J.C.28
Fraser, C.M.29
more..
-
31
-
-
0034602919
-
Structural comparison of the PhoB and OmpR DNA-binding/transactivation domains and the arrangement of PhoB molecules on the phosphate box
-
Okamura, H., S. Hanaoka, A. Nagadoi, K. Makino, and Y. Nishimura. 2000. Structural comparison of the PhoB and OmpR DNA-binding/transactivation domains and the arrangement of PhoB molecules on the phosphate box. J. Mol. Biol. 295:1225-1236.
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 1225-1236
-
-
Okamura, H.1
Hanaoka, S.2
Nagadoi, A.3
Makino, K.4
Nishimura, Y.5
-
32
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and W. Minor. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276(Pt. A):307-326.
-
(1997)
Methods Enzymol.
, vol.276
, Issue.PART A
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
33
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis, A., R. Morris, and V. S. Lamzin. 1999. Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 6:458-463.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
34
-
-
0033887436
-
A tale of two components: A novel kinase and a regulatory switch
-
Robinson, V. L., D. R. Buckler, and A. M. Stock. 2000. A tale of two components: a novel kinase and a regulatory switch. Nat. Struct. Biol. 7:628-633.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 628-633
-
-
Robinson, V.L.1
Buckler, D.R.2
Stock, A.M.3
-
35
-
-
1842848075
-
Domain arrangement of Der, a switch protein containing two GTPase domains
-
Robinson, V. L., J. Hwang, E. Fox, M. Inouye, and A. M. Stock. 2002. Domain arrangement of Der, a switch protein containing two GTPase domains. Structure 10:1649-1658.
-
(2002)
Structure
, vol.10
, pp. 1649-1658
-
-
Robinson, V.L.1
Hwang, J.2
Fox, E.3
Inouye, M.4
Stock, A.M.5
-
37
-
-
0030964038
-
Structural basis for ligand-regulated oligomerization of AraC
-
Soisson, S. M., B. MacDougall-Shackleton, R. Schleif, and C. Wolberger. 1997. Structural basis for ligand-regulated oligomerization of AraC. Science 276:421-425.
-
(1997)
Science
, vol.276
, pp. 421-425
-
-
Soisson, S.M.1
MacDougall-Shackleton, B.2
Schleif, R.3
Wolberger, C.4
-
38
-
-
0344142378
-
Three-dimensional crystal structure of the transcription factor PhoB receiver domain
-
Solà, M., F. X. Gomis-Rüth, L. Serrano, A. González, and M. Coll. 1999. Three-dimensional crystal structure of the transcription factor PhoB receiver domain. J. Mol. Biol. 285:675-687.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 675-687
-
-
Solà, M.1
Gomis-Rüth, F.X.2
Serrano, L.3
González, A.4
Coll, M.5
-
39
-
-
0024398149
-
Protein phosphorylation and regulation of adaptive responses in bacteria
-
Stock, J. B., A. J. Ninfa, and A. M. Stock. 1989. Protein phosphorylation and regulation of adaptive responses in bacteria. Microbiol. Rev. 53:450-490.
-
(1989)
Microbiol. Rev.
, vol.53
, pp. 450-490
-
-
Stock, J.B.1
Ninfa, A.J.2
Stock, A.M.3
-
40
-
-
0021919826
-
A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes
-
Tabor, S., and C. C. Richardson. 1985. A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc. Natl. Acad. Sci. USA 82:1074-1078.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 1074-1078
-
-
Tabor, S.1
Richardson, C.C.2
-
41
-
-
0024213995
-
Location of DNA-binding segment of a positive regulator, OmpR, involved in activation of the ompF and ompC genes of Escherichia coli
-
Tate, S., M. Kato, Y. Nishimura, Y. Arata, and T. Mizuno. 1988. Location of DNA-binding segment of a positive regulator, OmpR, involved in activation of the ompF and ompC genes of Escherichia coli. FEBS Lett. 242:27-30.
-
(1988)
FEBS Lett.
, vol.242
, pp. 27-30
-
-
Tate, S.1
Kato, M.2
Nishimura, Y.3
Arata, Y.4
Mizuno, T.5
-
42
-
-
0036872411
-
Protein-protein interactions: Mechanisms and modification by drugs
-
Veselovsky, A. V., Y. D. Ivanov, A. S. Ivanov, A. I. Archakov, P. Lewi, and P. Janssen. 2002. Protein-protein interactions: mechanisms and modification by drugs. J. Mol. Recognit. 15:405-422.
-
(2002)
J. Mol. Recognit.
, vol.15
, pp. 405-422
-
-
Veselovsky, A.V.1
Ivanov, Y.D.2
Ivanov, A.S.3
Archakov, A.I.4
Lewi, P.5
Janssen, P.6
-
43
-
-
0035834388
-
The guanine nucleotide-binding switch in three dimensions
-
Vetter, I. R., and A. Wittinghofer. 2001. The guanine nucleotide-binding switch in three dimensions. Science 294:1299-1304.
-
(2001)
Science
, vol.294
, pp. 1299-1304
-
-
Vetter, I.R.1
Wittinghofer, A.2
-
44
-
-
0037216806
-
Interdomain linkers of homologous response regulators determine their mechanism of action
-
Walthers, D., V. K. Tran, and L. J. Kenney. 2003. Interdomain linkers of homologous response regulators determine their mechanism of action. J. Bacteriol. 185:317-324.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 317-324
-
-
Walthers, D.1
Tran, V.K.2
Kenney, L.J.3
-
45
-
-
0035369115
-
Histidine kinases and response regulator proteins in two-component signaling systems
-
West, A. H., and A. M. Stock. 2001. Histidine kinases and response regulator proteins in two-component signaling systems. Trends Biochem. Sci. 26:369-376.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 369-376
-
-
West, A.H.1
Stock, A.M.2
-
46
-
-
0040886224
-
Molecular characterization of the PmrA regulon
-
Wösten, M. M., and E. A. Groisman. 1999. Molecular characterization of the PmrA regulon. J. Biol. Chem. 274:27185-27190.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 27185-27190
-
-
Wösten, M.M.1
Groisman, E.A.2
-
47
-
-
0346034963
-
Phosphorylation triggers domain separation in the DNA binding response regulator NarL
-
Zhang, J. H., G. Xiao, R. P. Gunsalus, and W. L. Hubbell. 2003. Phosphorylation triggers domain separation in the DNA binding response regulator NarL. Biochemistry 42:2552-2559.
-
(2003)
Biochemistry
, vol.42
, pp. 2552-2559
-
-
Zhang, J.H.1
Xiao, G.2
Gunsalus, R.P.3
Hubbell, W.L.4
|