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Volumn 9, Issue 4, 2014, Pages

CRISPR/Cas9 allows efficient and complete knock-in of a destabilization domain-tagged essential protein in a human cell line, allowing rapid knockdown of protein function

Author keywords

[No Author keywords available]

Indexed keywords

CRISPR ASSOCIATED PROTEIN; RIBOSOME PROTEIN; NUCLEAR PROTEIN; PHOSPHOPROTEIN; TCOF1 PROTEIN, HUMAN;

EID: 84899688932     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0095101     Document Type: Article
Times cited : (38)

References (35)
  • 1
    • 33748195107 scopus 로고    scopus 로고
    • A rapid, reversible, and tunable method to regulate protein function in living cells using synthetic small molecules
    • DOI 10.1016/j.cell.2006.07.025, PII S0092867406010130
    • Banaszynski LA, Chen LC, Maynard-Smith LA, Ooi AG, Wandless TJ (2006) A rapid, reversible, and tunable method to regulate protein function in living cells using synthetic small molecules. Cell 126: 995-1004. (Pubitemid 44310772)
    • (2006) Cell , vol.126 , Issue.5 , pp. 995-1004
    • Banaszynski, L.A.1    Chen, L.-c.2    Maynard-Smith, L.A.3    Ooi, A.G.L.4    Wandless, T.J.5
  • 2
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong L, Ran FA, Cox D, Lin S, Barretto R, et al. (2013) Multiplex genome engineering using CRISPR/Cas systems. Science 339: 819-823.
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1    Ran, F.A.2    Cox, D.3    Lin, S.4    Barretto, R.5
  • 3
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via case
    • Mali P, Yang L, Esvelt KM, Aach J, Guell M, et al. (2013) RNA-guided human genome engineering via Case. Science 339: 823-826.
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1    Yang, L.2    Esvelt, K.M.3    Aach, J.4    Guell, M.5
  • 4
    • 36749086400 scopus 로고    scopus 로고
    • An FKBP destabilization domain modulates protein levels in Plasmodium falciparum
    • DOI 10.1038/nmeth1132, PII NMETH1132
    • Armstrong CM, Goldberg DE (2007) An FKBP destabilization domain modulates protein levels in Plasmodium falciparum. Nat Methods 4: 1007-1009. (Pubitemid 350201770)
    • (2007) Nature Methods , vol.4 , Issue.12 , pp. 1007-1009
    • Armstrong, C.M.1    Goldberg, D.E.2
  • 6
    • 84884535315 scopus 로고    scopus 로고
    • Smallmolecule inhibition of a depalmitoylase enhances toxoplasma host-cell invasion
    • Child MA, Hall CI, Beck JR, Ofori LO, Albrow VE, et al. (2013) Smallmolecule inhibition of a depalmitoylase enhances Toxoplasma host-cell invasion. Nat Chem Biol 9: 651-656.
    • (2013) Nat Chem Biol , vol.9 , pp. 651-656
    • Child, M.A.1    Hall, C.I.2    Beck, J.R.3    Ofori, L.O.4    Albrow, V.E.5
  • 7
    • 84864018505 scopus 로고    scopus 로고
    • Systematic analysis of FKBP inducible degradation domain tagging strategies for the human malaria parasite plasmodium falciparum
    • de Azevedo, MF, Gilson PR, Gabriel HB, Simoes RF, Angrisano F, et al. (2012) Systematic analysis of FKBP inducible degradation domain tagging strategies for the human malaria parasite Plasmodium falciparum. PLoS One 7: e40981.
    • (2012) PLoS One , vol.7
    • Gilson, P.R.1    Gabriel, H.B.2    Simoes, R.F.3    Angrisano, F.4    De Azevedo, M.F.5
  • 9
    • 84859219780 scopus 로고    scopus 로고
    • Mammalian neurogenesis requires treacle-Plk1 for precise control of spindle orientation, mitotic progression, and maintenance of neural progenitor cells
    • Sakai D, Dixon J, Dixon MJ, Trainor PA (2012) Mammalian neurogenesis requires Treacle-Plk1 for precise control of spindle orientation, mitotic progression, and maintenance of neural progenitor cells. PLoS Genet 8: e1002566.
    • (2012) PLoS Genet , vol.8
    • Sakai, D.1    Dixon, J.2    Dixon, M.J.3    Trainor, P.A.4
  • 11
    • 67649447247 scopus 로고    scopus 로고
    • Treacle recruits RNA polymerase I complex to the nucleolus that is independent of UBF
    • Lin CI, Yeh NH (2009) Treacle recruits RNA polymerase I complex to the nucleolus that is independent of UBF. Biochem Biophys Res Commun 386: 396-401.
    • (2009) Biochem Biophys Res Commun , vol.386 , pp. 396-401
    • Lin, C.I.1    Yeh, N.H.2
  • 12
    • 26444526314 scopus 로고    scopus 로고
    • The Treacher Collins syndrome (TCOF1) gene product is involved in pre-rRNA methylation
    • DOI 10.1093/hmg/ddi208
    • Gonzales B, Henning D, So RB, Dixon J, Dixon MJ, et al. (2005) The Treacher Collins syndrome (TCOF1) gene product is involved in pre-rRNA methylation. Hum Mol Genet 14: 2035-2043. (Pubitemid 41418039)
    • (2005) Human Molecular Genetics , vol.14 , Issue.14 , pp. 2035-2043
    • Gonzales, B.1    Henning, D.2    So, R.B.3    Dixon, J.4    Dixon, M.J.5    Valdez, B.C.6
  • 13
    • 84863726985 scopus 로고    scopus 로고
    • Gross deletions in TCOF1 are a cause of treacher-collins-franceschetti syndrome
    • Bowman M, Oldridge M, Archer C, O'Rourke A, McParland J, et al. (2012) Gross deletions in TCOF1 are a cause of Treacher-Collins-Franceschetti syndrome. Eur J Hum Genet 20: 769-777.
    • (2012) Eur J Hum Genet , vol.20 , pp. 769-777
    • Bowman, M.1    Oldridge, M.2    Archer, C.3    O'Rourke, A.4    McParland, J.5
  • 14
    • 0029814274 scopus 로고    scopus 로고
    • Treacher Collins syndrome
    • Dixon MJ (1996) Treacher Collins syndrome. Hum Mol Genet 5 Spec No: 1391-1396. (Pubitemid 26293898)
    • (1996) Human Molecular Genetics , vol.5 , Issue.REVIEW , pp. 1391-1396
    • Dixon, M.J.1
  • 15
    • 60349114320 scopus 로고    scopus 로고
    • Treacher collins syndrome: Unmasking the role of tcof1 treacle
    • Sakai D, Trainor PA (2009) Treacher Collins syndrome: unmasking the role of Tcof1 treacle. Int J Biochem Cell Biol 41: 1229-1232.
    • (2009) Int J Biochem Cell Biol , vol.41 , pp. 1229-1232
    • Sakai, D.1    Trainor, P.A.2
  • 16
    • 60749102064 scopus 로고    scopus 로고
    • Treacher collins syndrome: Etiology, pathogenesis and prevention
    • Trainor PA, Dixon J, Dixon MJ (2009) Treacher Collins syndrome: etiology, pathogenesis and prevention. Eur J Hum Genet 17: 275-283.
    • (2009) Eur J Hum Genet , vol.17 , pp. 275-283
    • Trainor, P.A.1    Dixon, J.2    Dixon, M.J.3
  • 17
    • 0034641134 scopus 로고    scopus 로고
    • Increased levels of apoptosis in the prefusion neural folds underlie the craniofacial disorder, Treacher Collins syndrome
    • Dixon J, Brakebusch C, Fassler R, Dixon MJ (2000) Increased levels of apoptosis in the prefusion neural folds underlie the craniofacial disorder, Treacher Collins syndrome. Hum Mol Genet 9: 1473-1480. (Pubitemid 30386701)
    • (2000) Human Molecular Genetics , vol.9 , Issue.10 , pp. 1473-1480
    • Dixon, J.1    Brakebusch, C.2    Fassler, R.3    Dixon, M.J.4
  • 18
    • 84892765883 scopus 로고    scopus 로고
    • Genomescale CRISPR-case knockout screening in human cells
    • Shalem O, Sanjana NE, Hartenian E, Shi X, Scott DA, et al. (2014) Genomescale CRISPR-Case knockout screening in human cells. Science 343: 84-87.
    • (2014) Science , vol.343 , pp. 84-87
    • Shalem, O.1    Sanjana, N.E.2    Hartenian, E.3    Shi, X.4    Scott, D.A.5
  • 19
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Casr system
    • Wang T, Wei JJ, Sabatini DM, Lander ES (2014) Genetic screens in human cells using the CRISPR-Casr system. Science 343: 80-84.
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1    Wei, J.J.2    Sabatini, D.M.3    Lander, E.S.4
  • 22
    • 79955707349 scopus 로고    scopus 로고
    • High cleavage efficiency of a 2A peptide derived from porcine teschovirus-1 in human cell lines, zebrafish and mice
    • Kim JH, Lee SR, Li LH, Park HJ, Park JH, et al. (2011) High cleavage efficiency of a 2A peptide derived from porcine teschovirus-1 in human cell lines, zebrafish and mice. PLoS One 6: e18556.
    • (2011) PLoS One , vol.6
    • Kim, J.H.1    Lee, S.R.2    Li, L.H.3    Park, H.J.4    Park, J.H.5
  • 23
    • 33646356743 scopus 로고    scopus 로고
    • Rapid analysis of T-cell selection in vivo using T cell-receptor retrogenic mice
    • Holst J, Vignali KM, Burton AR, Vignali DA (2006) Rapid analysis of T-cell selection in vivo using T cell-receptor retrogenic mice. Nat Methods 3: 191-197.
    • (2006) Nat Methods , vol.3 , pp. 191-197
    • Holst, J.1    Vignali, K.M.2    Burton, A.R.3    Vignali, D.A.4
  • 25
    • 84866309615 scopus 로고    scopus 로고
    • Intracellular context affects levels of a chemically dependent destabilizing domain
    • Sellmyer MA, Chen LC, Egeler EL, Rakhit R, Wandless TJ (2012) Intracellular context affects levels of a chemically dependent destabilizing domain. PLoS One 7: e43297.
    • (2012) PLoS One , vol.7
    • Sellmyer, M.A.1    Chen, L.C.2    Egeler, E.L.3    Rakhit, R.4    Wandless, T.J.5
  • 26
    • 84891710947 scopus 로고    scopus 로고
    • Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases
    • Cho SW, Kim S, Kim Y, Kweon J, Kim HS, et al. (2014) Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases. Genome Res 24: 132-141.
    • (2014) Genome Res , vol.24 , pp. 132-141
    • Cho, S.W.1    Kim, S.2    Kim, Y.3    Kweon, J.4    Kim, H.S.5
  • 27
    • 84884950106 scopus 로고    scopus 로고
    • CRISPR/Cas9 systems targeting beta-globin and CCR5 genes have substantial off-target activity
    • Cradick TJ, Fine EJ, Antico CJ, Bao G (2013) CRISPR/Cas9 systems targeting beta-globin and CCR5 genes have substantial off-target activity. Nucleic Acids Res 41: 9584-9592.
    • (2013) Nucleic Acids Res , vol.41 , pp. 9584-9592
    • Cradick, T.J.1    Fine, E.J.2    Antico, C.J.3    Bao, G.4
  • 28
    • 84880570576 scopus 로고    scopus 로고
    • High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells
    • Fu Y, Foden JA, Khayter C, Maeder ML, Reyon D, et al. (2013) High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol 31: 822-826.
    • (2013) Nat Biotechnol , vol.31 , pp. 822-826
    • Fu, Y.1    Foden, J.A.2    Khayter, C.3    Maeder, M.L.4    Reyon, D.5
  • 30
    • 84884160273 scopus 로고    scopus 로고
    • Case transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
    • Mali P, Aach J, Stranges PB, Esvelt KM, Moosburner M, et al. (2013) CASE transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat Biotechnol 31: 833-838.
    • (2013) Nat Biotechnol , vol.31 , pp. 833-838
    • Mali, P.1    Aach, J.2    Stranges, P.B.3    Esvelt, K.M.4    Moosburner, M.5
  • 31
    • 84884155038 scopus 로고    scopus 로고
    • Highthroughput profiling of off-target DNA cleavage reveals RNA-programmed case nuclease specificity
    • Pattanayak V, Lin S, Guilinger JP, Ma E, Doudna JA, et al. (2013) Highthroughput profiling of off-target DNA cleavage reveals RNA-programmed Case nuclease specificity. Nat Biotechnol 31: 839-843.
    • (2013) Nat Biotechnol , vol.31 , pp. 839-843
    • Pattanayak, V.1    Lin, S.2    Guilinger, J.P.3    Ma, E.4    Doudna, J.A.5
  • 32
    • 84884288934 scopus 로고    scopus 로고
    • Double nicking by RNA-guided CRISPR Case for enhanced genome editing specificity
    • Ran FA, Hsu PD, Lin CY, Gootenberg JS, Konermann S, et al. (2013) Double nicking by RNA-guided CRISPR Case for enhanced genome editing specificity. Cell 154: 1380-1389.
    • (2013) Cell , vol.154 , pp. 1380-1389
    • Ran, F.A.1    Hsu, P.D.2    Lin, C.Y.3    Gootenberg, J.S.4    Konermann, S.5
  • 33
    • 77956972260 scopus 로고    scopus 로고
    • A general chemical method to regulate protein stability in the mammalian central nervous system
    • Iwamoto M, Bjorklund T, Lundberg C, Kirik D, Wandless TJ (2010) A general chemical method to regulate protein stability in the mammalian central nervous system. Chem Biol 17: 981-988.
    • (2010) Chem Biol , vol.17 , pp. 981-988
    • Iwamoto, M.1    Bjorklund, T.2    Lundberg, C.3    Kirik, D.4    Wandless, T.J.5
  • 34
    • 84863229331 scopus 로고    scopus 로고
    • Destabilizing domains derived from the human estrogen receptor
    • Miyazaki Y, Imoto H, Chen LC, Wandless TJ (2012) Destabilizing domains derived from the human estrogen receptor. J Am Chem Soc 134: 3942-3945.
    • (2012) J Am Chem Soc , vol.134 , pp. 3942-3945
    • Miyazaki, Y.1    Imoto, H.2    Chen, L.C.3    Wandless, T.J.4
  • 35
    • 73349085934 scopus 로고    scopus 로고
    • An auxin-based degron system for the rapid depletion of proteins in nonplant cells
    • Nishimura K, Fukagawa T, Takisawa H, Kakimoto T, Kanemaki M (2009) An auxin-based degron system for the rapid depletion of proteins in nonplant cells. Nat Methods 6: 917-922.
    • (2009) Nat Methods , vol.6 , pp. 917-922
    • Nishimura, K.1    Fukagawa, T.2    Takisawa, H.3    Kakimoto, T.4    Kanemaki, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.