-
1
-
-
33746478595
-
Murine retrovirus escapes from murine APOBEC3 via two distinct novel mechanisms
-
doi:10.1016/j.cub.2006.06.055
-
Abudu, A., Takaori-Kondo, A., Izumi, T., Shirakawa, K., Kobayashi, M., Sasada, A., Fukunaga, K. & Uchiyama, T. 2006 Murine retrovirus escapes from murine APOBEC3 via two distinct novel mechanisms. Curr. Biol. 16, 1565-1570. (doi:10.1016/j.cub.2006.06.055)
-
(2006)
Curr. Biol
, vol.16
, pp. 1565-1570
-
-
Abudu, A.1
Takaori-Kondo, A.2
Izumi, T.3
Shirakawa, K.4
Kobayashi, M.5
Sasada, A.6
Fukunaga, K.7
Uchiyama, T.8
-
2
-
-
0018411169
-
Evolutionary relatedness of viper and primate endogenous retroviruses
-
doi:10.1126/science.219480
-
Andersen, P. R., Barbacid, M., Tronick, S. R., Clark, H. F. & Aaronson, S. A. 1979 Evolutionary relatedness of viper and primate endogenous retroviruses. Science 204, 318-321. (doi:10.1126/science.219480)
-
(1979)
Science
, vol.204
, pp. 318-321
-
-
Andersen, P.R.1
Barbacid, M.2
Tronick, S.R.3
Clark, H.F.4
Aaronson, S.A.5
-
3
-
-
33847013679
-
Review of current knowledge on HPV vaccination: An appendix to the European Guidelines for Quality Assurance in Cervical Cancer Screening
-
doi:10.1016/j.jcv.2006.12.009
-
Arbyn, M. & Dillner, J. 2007 Review of current knowledge on HPV vaccination: an appendix to the European Guidelines for Quality Assurance in Cervical Cancer Screening. J. Clin. Virol. 38, 189-197. (doi:10.1016/j.jcv.2006.12.009)
-
(2007)
J. Clin. Virol
, vol.38
, pp. 189-197
-
-
Arbyn, M.1
Dillner, J.2
-
4
-
-
50149098961
-
Conserved footprints of APOBEC3G on hypermutated human immunodeficiency virus type 1 and human endogenous retrovirus HERV-K(HML2) sequences
-
doi:10.1128/JVI.00584-08
-
Armitage, A. E. et al. 2008 Conserved footprints of APOBEC3G on hypermutated human immunodeficiency virus type 1 and human endogenous retrovirus HERV-K(HML2) sequences. J. Virol. 82, 8743-8761. (doi:10.1128/JVI.00584-08)
-
(2008)
J. Virol
, vol.82
, pp. 8743-8761
-
-
Armitage, A.E.1
-
5
-
-
12344300804
-
Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome
-
doi:10.1371/journal.pbio.0020391
-
Athanasiadis, A., Rich, A. & Maas, S. 2004 Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome. PLoS Biol. 2, e391. (doi:10.1371/journal.pbio.0020391)
-
(2004)
PLoS Biol
, vol.2
-
-
Athanasiadis, A.1
Rich, A.2
Maas, S.3
-
6
-
-
1542328859
-
Comparison of the differential context-dependence of DNA deamination by APOBEC enzymes: Correlation with mutation spectra in vivo
-
doi:10.1016/j.jmb.2004.01.046
-
Beale, R. C., Petersen-Mahrt, S. K., Watt, I. N., Harris, R. S., Rada, C. & Neuberger, M. S. 2004 Comparison of the differential context-dependence of DNA deamination by APOBEC enzymes: correlation with mutation spectra in vivo. J. Mol. Biol. 337, 585-596. (doi:10.1016/j.jmb.2004.01.046)
-
(2004)
J. Mol. Biol
, vol.337
, pp. 585-596
-
-
Beale, R.C.1
Petersen-Mahrt, S.K.2
Watt, I.N.3
Harris, R.S.4
Rada, C.5
Neuberger, M.S.6
-
7
-
-
0016289005
-
Evolution of type C viral genes: I. Nucleic acid from baboon type C virus as a measure of divergence among primate species
-
doi:10.1073/pnas.71.11.4513
-
Benveniste, R. E. & Todaro, G. J. 1974 Evolution of type C viral genes: I. Nucleic acid from baboon type C virus as a measure of divergence among primate species. Proc. Natl Acad. Sci. USA 71, 4513-4518. (doi:10.1073/pnas.71.11.4513)
-
(1974)
Proc. Natl Acad. Sci. USA
, vol.71
, pp. 4513-4518
-
-
Benveniste, R.E.1
Todaro, G.J.2
-
8
-
-
30644471873
-
What is a quasispecies?
-
doi:10.1007/3-540-26397-7-1
-
Biebricher, C. K. & Eigen, M. 2006 What is a quasispecies? Curr. Top. Microbiol. Immunol. 299, 1-31. (doi:10.1007/3-540-26397-7-1)
-
(2006)
Curr. Top. Microbiol. Immunol
, vol.299
, pp. 1-31
-
-
Biebricher, C.K.1
Eigen, M.2
-
9
-
-
10944271858
-
A survey of RNA editing in human brain
-
doi:10.1101/gr.2951204
-
Blow, M., Futreal, P. A., Wooster, R. & Stratton, M. R. 2004 A survey of RNA editing in human brain. Genome Res. 14, 2379-2387. (doi:10.1101/gr.2951204)
-
(2004)
Genome Res
, vol.14
, pp. 2379-2387
-
-
Blow, M.1
Futreal, P.A.2
Wooster, R.3
Stratton, M.R.4
-
10
-
-
33745044396
-
Cellular inhibitors of long interspersed element 1 and Alu retrotransposition
-
doi:10.1073/pnas.0603313103
-
Bogerd, H. P., Wiegand, H. L., Hulme, A. E., Garcia-Perez, J. L., O'Shea, K. S., Moran, J. V. & Cullen, B. R. 2006 Cellular inhibitors of long interspersed element 1 and Alu retrotransposition. Proc. Natl Acad. Sci. USA 103, 8780-8785. (doi:10.1073/pnas.0603313103)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 8780-8785
-
-
Bogerd, H.P.1
Wiegand, H.L.2
Hulme, A.E.3
Garcia-Perez, J.L.4
O'Shea, K.S.5
Moran, J.V.6
Cullen, B.R.7
-
11
-
-
56449092831
-
Equine infectious anemia virus resists the anti-retroviral activity of equine APOBEC3 proteins through a packaging-independent mechanism
-
In press
-
Bogerd, H. P., Tallmadge, R. L., Oaks, J. L., Carpenter, S. & Cullen, B. R. In press. Equine infectious anemia virus resists the anti-retroviral activity of equine APOBEC3 proteins through a packaging-independent mechanism. J. Virol.
-
J. Virol
-
-
Bogerd, H.P.1
Tallmadge, R.L.2
Oaks, J.L.3
Carpenter, S.4
Cullen, B.R.5
-
12
-
-
33745541663
-
Interferon-inducible expression of APOBEC3 editing enzymes in human hepatocytes and inhibition of hepatitis B virus replication
-
doi:10.1002/hep.21187
-
Bonvin, M. et al. 2006 Interferon-inducible expression of APOBEC3 editing enzymes in human hepatocytes and inhibition of hepatitis B virus replication. Hepatology 43, 1364-1374. (doi:10.1002/hep.21187)
-
(2006)
Hepatology
, vol.43
, pp. 1364-1374
-
-
Bonvin, M.1
-
13
-
-
0023617743
-
Apolipoprotein B-48 is the product of a messenger RNA with an organ-specific in-frame stop codon
-
doi:10.1126/science.3659919
-
Chen, S. H. et al. 1987 Apolipoprotein B-48 is the product of a messenger RNA with an organ-specific in-frame stop codon. Science 238, 363-366. (doi:10.1126/science.3659919)
-
(1987)
Science
, vol.238
, pp. 363-366
-
-
Chen, S.H.1
-
14
-
-
16244407760
-
-
Cogliano, V., Baan, R., Straif, K., Grosse, Y., Secretan, B., El Ghissassi, F. & WHO International Agency for Research on Cancer 2005 Carcinogenicity of human papillomaviruses. Lancet Oncol. 6, 204.
-
Cogliano, V., Baan, R., Straif, K., Grosse, Y., Secretan, B., El Ghissassi, F. & WHO International Agency for Research on Cancer 2005 Carcinogenicity of human papillomaviruses. Lancet Oncol. 6, 204.
-
-
-
-
15
-
-
33750344250
-
Identification of APOBEC3DE as another antiretroviral factor from the human APOBEC family
-
doi:10.1128/JVI.01123- 06
-
Dang, Y., Wang, X., Esselman, W. J. & Zheng, Y. H. 2006 Identification of APOBEC3DE as another antiretroviral factor from the human APOBEC family. J. Virol. 80, 10522-10533. (doi:10.1128/JVI.01123- 06)
-
(2006)
J. Virol
, vol.80
, pp. 10522-10533
-
-
Dang, Y.1
Wang, X.2
Esselman, W.J.3
Zheng, Y.H.4
-
16
-
-
30344450447
-
Restriction of foamy viruses by APOBEC cytidine deaminases
-
doi:10.1128/JVI.80.2.605-614.2006
-
Delebecque, F., Suspène, R., Calattini, S., Casartelli, N., Saib, A., Froment, A., Wain-Hobson, S., Gessain, A., Vartanian, J. P. & Schwartz, O. 2006 Restriction of foamy viruses by APOBEC cytidine deaminases. J. Virol. 80, 605-614. (doi:10.1128/JVI.80.2.605-614.2006)
-
(2006)
J. Virol
, vol.80
, pp. 605-614
-
-
Delebecque, F.1
Suspène, R.2
Calattini, S.3
Casartelli, N.4
Saib, A.5
Froment, A.6
Wain-Hobson, S.7
Gessain, A.8
Vartanian, J.P.9
Schwartz, O.10
-
17
-
-
0031929672
-
Identification of highly attenuated mutants of simian immunodeficiency virus
-
Desrosiers, R. C., Lifson, J. D., Gibbs, J. S., Czajak, S. C., Howe, A. Y., Arthur, L. O. & Johnson, R. P. 1998 Identification of highly attenuated mutants of simian immunodeficiency virus. J. Virol. 72, 1431-1437.
-
(1998)
J. Virol
, vol.72
, pp. 1431-1437
-
-
Desrosiers, R.C.1
Lifson, J.D.2
Gibbs, J.S.3
Czajak, S.C.4
Howe, A.Y.5
Arthur, L.O.6
Johnson, R.P.7
-
18
-
-
2942567871
-
Classification of papillomaviruses
-
doi:10.1016/j.virol.2004.03.033
-
de Villiers, E. M., Fauquet, C., Broker, T. R., Bernard, H. U. & zur Hausen, H. 2004 Classification of papillomaviruses. Virology 324, 17-27. (doi:10.1016/j.virol.2004.03.033)
-
(2004)
Virology
, vol.324
, pp. 17-27
-
-
de Villiers, E.M.1
Fauquet, C.2
Broker, T.R.3
Bernard, H.U.4
zur Hausen, H.5
-
19
-
-
20744439203
-
Differential sensitivity of murine leukemia virus to APOBEC3-mediated inhibition is governed by virion exclusion
-
doi:10.1128/JVI.79.13.8201-8207.2005
-
Doehle, B. P., Schafer, A., Wiegand, H. L., Bogerd, H. P. & Cullen, B. R. 2005 Differential sensitivity of murine leukemia virus to APOBEC3-mediated inhibition is governed by virion exclusion. J. Virol. 79, 8201-8207. (doi:10.1128/JVI.79.13.8201-8207.2005)
-
(2005)
J. Virol
, vol.79
, pp. 8201-8207
-
-
Doehle, B.P.1
Schafer, A.2
Wiegand, H.L.3
Bogerd, H.P.4
Cullen, B.R.5
-
20
-
-
0027221640
-
Rates of spontaneous mutation among RNA viruses
-
doi:10.1073/pnas.90.9. 4171
-
Drake, J. W. 1993 Rates of spontaneous mutation among RNA viruses. Proc. Natl Acad. Sci. USA 90, 4171-4175. (doi:10.1073/pnas.90.9. 4171)
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 4171-4175
-
-
Drake, J.W.1
-
21
-
-
12344290084
-
Is abundant A-to-I RNA editing primate-specific?
-
doi:10.1016/j.tig.2004.12.005
-
Eisenberg, E., Nemzer, S., Kinar, Y., Sorek, R., Rechavi, G. & Levanon, E. Y. 2005 Is abundant A-to-I RNA editing primate-specific? Trends Genet. 21, 77-81. (doi:10.1016/j.tig.2004.12.005)
-
(2005)
Trends Genet
, vol.21
, pp. 77-81
-
-
Eisenberg, E.1
Nemzer, S.2
Kinar, Y.3
Sorek, R.4
Rechavi, G.5
Levanon, E.Y.6
-
22
-
-
13444282074
-
APOBEC3G cytidine deaminase inhibits retrotransposition of endogenous retroviruses
-
doi:10.1038/nature03238
-
Esnault, C., Heidmann, O., Delebecque, F., Dewannieux, M., Ribet, D., Hance, A. J., Heidmann, T. & Schwartz, O. 2005 APOBEC3G cytidine deaminase inhibits retrotransposition of endogenous retroviruses. Nature 433, 430-433. (doi:10.1038/nature03238)
-
(2005)
Nature
, vol.433
, pp. 430-433
-
-
Esnault, C.1
Heidmann, O.2
Delebecque, F.3
Dewannieux, M.4
Ribet, D.5
Hance, A.J.6
Heidmann, T.7
Schwartz, O.8
-
23
-
-
33847193509
-
Antiviral protein APOBEC3G localizes to ribonucleoprotein complexes found in P bodies and stress granules
-
doi:10.1128/JVI.02287-06
-
Gallois-Montbrun, S., Kramer, B., Swanson, C. M., Byers, H., Lynham, S., Ward, M. & Malim, M. H. 2007 Antiviral protein APOBEC3G localizes to ribonucleoprotein complexes found in P bodies and stress granules. J. Virol. 81, 2165-2178. (doi:10.1128/JVI.02287-06)
-
(2007)
J. Virol
, vol.81
, pp. 2165-2178
-
-
Gallois-Montbrun, S.1
Kramer, B.2
Swanson, C.M.3
Byers, H.4
Lynham, S.5
Ward, M.6
Malim, M.H.7
-
24
-
-
43949090162
-
Comparison of cellular ribonucleoprotein complexes associated with the APOBEC3F and APOBEC3G antiviral proteins
-
doi:10.1128/JVI.00287-08
-
Gallois-Montbrun, S., Holmes, R. K., Swanson, C. M., Fernandez-Ocana, M., Byers, H. L., Ward, M. A. & Malim, M. H. 2008 Comparison of cellular ribonucleoprotein complexes associated with the APOBEC3F and APOBEC3G antiviral proteins. J. Virol. 82, 5636-5642. (doi:10.1128/JVI.00287-08)
-
(2008)
J. Virol
, vol.82
, pp. 5636-5642
-
-
Gallois-Montbrun, S.1
Holmes, R.K.2
Swanson, C.M.3
Fernandez-Ocana, M.4
Byers, H.L.5
Ward, M.A.6
Malim, M.H.7
-
25
-
-
0020317308
-
Patterns of nucleotide substitution in pseudogenes and functional genes
-
doi:10.1007/BF01733904
-
Gojobori, T., Li, W. H. & Graur, D. 1982 Patterns of nucleotide substitution in pseudogenes and functional genes. J. Mol. Evol. 18, 360-369. (doi:10.1007/BF01733904)
-
(1982)
J. Mol. Evol
, vol.18
, pp. 360-369
-
-
Gojobori, T.1
Li, W.H.2
Graur, D.3
-
26
-
-
0029145415
-
Hypermodified bases in DNA
-
Gommers-Ampt, J. H. & Borst, P. 1995 Hypermodified bases in DNA. FASEB J. 9, 1034-1042.
-
(1995)
FASEB J
, vol.9
, pp. 1034-1042
-
-
Gommers-Ampt, J.H.1
Borst, P.2
-
27
-
-
33947101019
-
Patterns of somatic mutation in human cancer genomes
-
doi:10.1038/nature05610
-
Greenman, C. et al. 2007 Patterns of somatic mutation in human cancer genomes. Nature 446, 153-158. (doi:10.1038/nature05610)
-
(2007)
Nature
, vol.446
, pp. 153-158
-
-
Greenman, C.1
-
28
-
-
0342378081
-
Naturally occurring hepatitis B virus genomes bearing the hallmarks of retroviral G→A hypermutation
-
doi:10.1006/viro.1997.8676
-
Günther, S., Sommer, G., Plikat, U., Iwanska, A., Wain-Hobson, S., Will, H. & Meyerhans, A. 1997 Naturally occurring hepatitis B virus genomes bearing the hallmarks of retroviral G→A hypermutation. Virology 235, 104-108. (doi:10.1006/viro.1997.8676)
-
(1997)
Virology
, vol.235
, pp. 104-108
-
-
Günther, S.1
Sommer, G.2
Plikat, U.3
Iwanska, A.4
Wain-Hobson, S.5
Will, H.6
Meyerhans, A.7
-
29
-
-
0036863733
-
RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators
-
doi:10.1016/S1097-2765(02)00742-6
-
Harris, R. S., Petersen-Mahrt, S. K. & Neuberger, M. S. 2002 RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators. Mol. Cell 10, 1247-1253. (doi:10.1016/S1097-2765(02)00742-6)
-
(2002)
Mol. Cell
, vol.10
, pp. 1247-1253
-
-
Harris, R.S.1
Petersen-Mahrt, S.K.2
Neuberger, M.S.3
-
30
-
-
0038681901
-
DNA deamination mediates innate immunity to retroviral infection
-
doi:10.1016/S0092-8674(03)00423-9
-
Harris, R. S., Bishop, K. N., Sheehy, A. M., Craig, H. M., Petersen-Mahrt, S. K., Watt, I. N., Neuberger, M. S. & Malim, M. H. 2003 DNA deamination mediates innate immunity to retroviral infection. Cell 113, 803-809. (doi:10.1016/S0092-8674(03)00423-9)
-
(2003)
Cell
, vol.113
, pp. 803-809
-
-
Harris, R.S.1
Bishop, K.N.2
Sheehy, A.M.3
Craig, H.M.4
Petersen-Mahrt, S.K.5
Watt, I.N.6
Neuberger, M.S.7
Malim, M.H.8
-
31
-
-
0025284804
-
Mutation frequencies at defined single codon sites in vesicular stomatitis virus and poliovirus can be increased only slightly by chemical mutagenesis
-
Holland, J. J., Domingo, E., de la Torre, J. C. & Steinhauer, D. A. 1990 Mutation frequencies at defined single codon sites in vesicular stomatitis virus and poliovirus can be increased only slightly by chemical mutagenesis. J. Virol. 64, 3960-3962.
-
(1990)
J. Virol
, vol.64
, pp. 3960-3962
-
-
Holland, J.J.1
Domingo, E.2
de la Torre, J.C.3
Steinhauer, D.A.4
-
32
-
-
0036317717
-
Identification and characterization of two closely related unclassifiable endogenous retroviruses in pythons (Python molurus and Python curtus)
-
doi:10.1128/JVI.76.15.7607-7615.2002
-
Huder, J. B., Boni, J., Hatt, J. M., Soldati, G., Lutz, H. & Schupbach, J. 2002 Identification and characterization of two closely related unclassifiable endogenous retroviruses in pythons (Python molurus and Python curtus). J. Virol. 76, 7607-7615. (doi:10.1128/JVI.76.15.7607-7615.2002)
-
(2002)
J. Virol
, vol.76
, pp. 7607-7615
-
-
Huder, J.B.1
Boni, J.2
Hatt, J.M.3
Soldati, G.4
Lutz, H.5
Schupbach, J.6
-
33
-
-
0030066167
-
Biosynthesis of apolipoprotein B48-containing lipoproteins. Regulation by novel post-transcriptional mechanisms
-
doi:10.1074/jbc.271.5.2353
-
Innerarity, T. L., Boren, J., Yamanaka, S. & Olofsson, S. O. 1996 Biosynthesis of apolipoprotein B48-containing lipoproteins. Regulation by novel post-transcriptional mechanisms. J. Biol. Chem. 271, 2353-2356. (doi:10.1074/jbc.271.5.2353)
-
(1996)
J. Biol. Chem
, vol.271
, pp. 2353-2356
-
-
Innerarity, T.L.1
Boren, J.2
Yamanaka, S.3
Olofsson, S.O.4
-
34
-
-
0036200070
-
An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22
-
doi:10.1006/geno.2002.6718
-
Jarmuz, A., Chester, A., Bayliss, J., Gisbourne, J., Dunham, I., Scott, J. & Navaratnam, N. 2002 An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22. Genomics 79, 285-296. (doi:10.1006/geno.2002.6718)
-
(2002)
Genomics
, vol.79
, pp. 285-296
-
-
Jarmuz, A.1
Chester, A.2
Bayliss, J.3
Gisbourne, J.4
Dunham, I.5
Scott, J.6
Navaratnam, N.7
-
35
-
-
35948967657
-
Role of APOBEC3 in genetic diversity among endogenous murine leukemia viruses
-
doi:10.1371/journal.pgen.0030183
-
Jern, P., Stoye, J. P. & Coffin, J. M. 2007 Role of APOBEC3 in genetic diversity among endogenous murine leukemia viruses. PLoS Genet. 3, 2014-2022. (doi:10.1371/journal.pgen.0030183)
-
(2007)
PLoS Genet
, vol.3
, pp. 2014-2022
-
-
Jern, P.1
Stoye, J.P.2
Coffin, J.M.3
-
36
-
-
41149164155
-
The restriction of zoonotic PERV transmission by human APOBEC3G
-
doi:10.1371/journal.pone.0000893
-
Jonsson, S. R., LaRue, R. S., Stenglein, M. D., Fahrenkrug, S. C., Andresdottir, V. & Harris, R. S. 2007 The restriction of zoonotic PERV transmission by human APOBEC3G. PLoS ONE 2, e893. (doi:10.1371/journal.pone.0000893)
-
(2007)
PLoS ONE
, vol.2
-
-
Jonsson, S.R.1
LaRue, R.S.2
Stenglein, M.D.3
Fahrenkrug, S.C.4
Andresdottir, V.5
Harris, R.S.6
-
37
-
-
34447340466
-
Discovery and analysis of the first endogenous lentivirus
-
doi:10.1073/pnas.0700471104
-
Katzourakis, A., Tristem, M., Pybus, O. G. & Gifford, R. J. 2007 Discovery and analysis of the first endogenous lentivirus. Proc. Natl Acad. Sci. USA 104, 6261-6265. (doi:10.1073/pnas.0700471104)
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 6261-6265
-
-
Katzourakis, A.1
Tristem, M.2
Pybus, O.G.3
Gifford, R.J.4
-
38
-
-
13744255000
-
G→A hypermutation in protease and reverse transcriptase regions of human immunodeficiency virus type 1 residing in resting CD4C+T cells in vivo
-
doi:10.1128/JVI.79.3.1975-1980.2005
-
Kieffer, T. L., Kwon, P., Nettles, R. E., Han, Y., Ray, S. C. & Siliciano, R. F. 2005 G→A hypermutation in protease and reverse transcriptase regions of human immunodeficiency virus type 1 residing in resting CD4C+T cells in vivo. J. Virol. 79, 1975-1980. (doi:10.1128/JVI.79.3.1975-1980.2005)
-
(2005)
J. Virol
, vol.79
, pp. 1975-1980
-
-
Kieffer, T.L.1
Kwon, P.2
Nettles, R.E.3
Han, Y.4
Ray, S.C.5
Siliciano, R.F.6
-
39
-
-
43849109664
-
Variable contexts and levels of hypermutation in HIV-1 proviral genomes recovered from primary peripheral blood mononuclear cells
-
doi:10.1016/j.virol.2008.03.017
-
Kijak, G. H., Janini, L. M., Tovanabutra, S., Sanders-Buell, E., Arroyo, M. A., Robb, M. L., Michael, N. L., Birx, D. L. & McCutchan, F. E. 2008 Variable contexts and levels of hypermutation in HIV-1 proviral genomes recovered from primary peripheral blood mononuclear cells. Virology 376, 101-111. (doi:10.1016/j.virol.2008.03.017)
-
(2008)
Virology
, vol.376
, pp. 101-111
-
-
Kijak, G.H.1
Janini, L.M.2
Tovanabutra, S.3
Sanders-Buell, E.4
Arroyo, M.A.5
Robb, M.L.6
Michael, N.L.7
Birx, D.L.8
McCutchan, F.E.9
-
40
-
-
4644324088
-
Widespread RNA editing of embedded alu elements in the human transcriptome
-
doi:10.1101/gr.2855504
-
Kim, D. D., Kim, T. T., Walsh, T., Kobayashi, Y., Matise, T. C., Buyske, S. & Gabriel, A. 2004 Widespread RNA editing of embedded alu elements in the human transcriptome. Genome Res. 14, 1719-1725. (doi:10.1101/gr.2855504)
-
(2004)
Genome Res
, vol.14
, pp. 1719-1725
-
-
Kim, D.D.1
Kim, T.T.2
Walsh, T.3
Kobayashi, Y.4
Matise, T.C.5
Buyske, S.6
Gabriel, A.7
-
41
-
-
34250688401
-
All APOBEC3 family proteins differentially inhibit LINE-1 retrotransposition
-
doi:10.1093/nar/gkm181
-
Kinomoto, M., Kanno, T., Shimura, M., Ishizaka, Y., Kojima, A., Kurata, T., Sata, T. & Tokunaga, K. 2007 All APOBEC3 family proteins differentially inhibit LINE-1 retrotransposition. Nucleic Acids Res. 35, 2955-2964. (doi:10.1093/nar/gkm181)
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 2955-2964
-
-
Kinomoto, M.1
Kanno, T.2
Shimura, M.3
Ishizaka, Y.4
Kojima, A.5
Kurata, T.6
Sata, T.7
Tokunaga, K.8
-
42
-
-
0017782451
-
2-Aminoadenine is an adenine substituting for a base in S-2L cyanophage DNA
-
doi:10.1038/270369a0
-
Kirnos, M. D., Khudyakov, I. Y., Alexandrushkina, N. I. & Vanyushin, B. F. 1977 2-Aminoadenine is an adenine substituting for a base in S-2L cyanophage DNA. Nature 270, 369-370. (doi:10.1038/270369a0)
-
(1977)
Nature
, vol.270
, pp. 369-370
-
-
Kirnos, M.D.1
Khudyakov, I.Y.2
Alexandrushkina, N.I.3
Vanyushin, B.F.4
-
43
-
-
40949132893
-
Activation-induced cytidine deaminase links bile duct inflammation to human cholangiocarcinoma
-
doi:10.1002/hep.22125
-
Komori, J. et al. 2008 Activation-induced cytidine deaminase links bile duct inflammation to human cholangiocarcinoma. Hepatology 47, 888-896. (doi:10.1002/hep.22125)
-
(2008)
Hepatology
, vol.47
, pp. 888-896
-
-
Komori, J.1
-
44
-
-
33845703967
-
Expression of activation-induced cytidine deaminase in human hepatocytes during hepatocarcinogenesis
-
doi:10.1002/ijc.22292
-
Kou, T. et al. 2007 Expression of activation-induced cytidine deaminase in human hepatocytes during hepatocarcinogenesis. Int. J. Cancer 120, 469-476. (doi:10.1002/ijc.22292)
-
(2007)
Int. J. Cancer
, vol.120
, pp. 469-476
-
-
Kou, T.1
-
45
-
-
0028873269
-
Somatic spectrum of cancer-associated single basepair substitutions in the TP53 gene is determined mainly by endogenous mechanisms of mutation and by selection
-
doi:10.1002/humu.1380050107
-
Krawczak, M., Smith-Sorensen, B., Schmidtke, J., Kakkar, V. V., Cooper, D. N. & Hovig, E. 1995 Somatic spectrum of cancer-associated single basepair substitutions in the TP53 gene is determined mainly by endogenous mechanisms of mutation and by selection. Hum. Mutat. 5, 48-57. (doi:10.1002/humu.1380050107)
-
(1995)
Hum. Mutat
, vol.5
, pp. 48-57
-
-
Krawczak, M.1
Smith-Sorensen, B.2
Schmidtke, J.3
Kakkar, V.V.4
Cooper, D.N.5
Hovig, E.6
-
46
-
-
0038363470
-
Hypermutation of HIV-1 DNA in the absence of the Vif protein
-
doi:10.1126/science.1083338
-
Lecossier, D., Bouchonnet, F., Clavel, F. & Hance, A. J. 2003 Hypermutation of HIV-1 DNA in the absence of the Vif protein. Science 300, 1112. (doi:10.1126/science.1083338)
-
(2003)
Science
, vol.300
, pp. 1112
-
-
Lecossier, D.1
Bouchonnet, F.2
Clavel, F.3
Hance, A.J.4
-
47
-
-
50149083663
-
Hypermutation of an ancient human retrovirus by APOBEC3G
-
doi:10.1128/JVI.00751-08
-
Lee, Y. N., Malim, M. H. & Bieniasz, P. D. 2008 Hypermutation of an ancient human retrovirus by APOBEC3G. J. Virol. 82, 8762-8770. (doi:10.1128/JVI.00751-08)
-
(2008)
J. Virol
, vol.82
, pp. 8762-8770
-
-
Lee, Y.N.1
Malim, M.H.2
Bieniasz, P.D.3
-
48
-
-
3543004084
-
Systematic identification of abundant A-to-I editing sites in the human transcriptome
-
doi:10.1038/nbt996
-
Levanon, E. Y. et al. 2004 Systematic identification of abundant A-to-I editing sites in the human transcriptome. Nat. Biotechnol. 22, 1001-1005. (doi:10.1038/nbt996)
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 1001-1005
-
-
Levanon, E.Y.1
-
49
-
-
14844348294
-
Evolutionarily conserved human targets of adenosine to inosine RNA editing
-
doi:10.1093/nar/gki239
-
Levanon, E. Y., Hallegger, M., Kinar, Y., Shemesh, R., Djinovic-Carugo, K., Rechavi, G., Jantsch, M. F. & Eisenberg, E. 2005 Evolutionarily conserved human targets of adenosine to inosine RNA editing. Nucleic Acids Res. 33, 1162-1168. (doi:10.1093/nar/gki239)
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1162-1168
-
-
Levanon, E.Y.1
Hallegger, M.2
Kinar, Y.3
Shemesh, R.4
Djinovic-Carugo, K.5
Rechavi, G.6
Jantsch, M.F.7
Eisenberg, E.8
-
50
-
-
4143071549
-
APOBEC3F properties and hypermutation preferences indicate activity against HIV-1 in vivo
-
doi:10.1016/j.cub. 2004.06.050
-
Liddament, M. T., Brown, W. L., Schumacher, A. J. & Harris, R. S. 2004 APOBEC3F properties and hypermutation preferences indicate activity against HIV-1 in vivo. Curr. Biol. 14, 1385-1391. (doi:10.1016/j.cub. 2004.06.050)
-
(2004)
Curr. Biol
, vol.14
, pp. 1385-1391
-
-
Liddament, M.T.1
Brown, W.L.2
Schumacher, A.J.3
Harris, R.S.4
-
51
-
-
0033529751
-
Identification and characterization of a human tRNA-specific adenosine deaminase related to the ADAR family of pre-mRNA editing enzymes
-
doi:10.1073/pnas.96.16.8895
-
Maas, S., Gerber, A. P. & Rich, A. 1999 Identification and characterization of a human tRNA-specific adenosine deaminase related to the ADAR family of pre-mRNA editing enzymes. Proc. Natl Acad. Sci. USA 96, 8895-8900. (doi:10.1073/pnas.96.16.8895)
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 8895-8900
-
-
Maas, S.1
Gerber, A.P.2
Rich, A.3
-
52
-
-
0033511807
-
Psoriasis upregulated phorbolin-1 shares structural but not functional similarity to the mRNA-editing protein APOBEC-1
-
doi:10.1046/j.1523-1747.1999. 00682.x
-
Madsen, P. et al. 1999 Psoriasis upregulated phorbolin-1 shares structural but not functional similarity to the mRNA-editing protein APOBEC-1. J. Invest. Dermatol. 113, 162-169. (doi:10.1046/j.1523-1747.1999. 00682.x)
-
(1999)
J. Invest. Dermatol
, vol.113
, pp. 162-169
-
-
Madsen, P.1
-
53
-
-
23844500835
-
Extensive editing of a small fraction of human T-cell leukemia virus type 1 genomes by four APOBEC3 cytidine deaminases
-
doi:10.1099/vir.0. 80973-0
-
Mahieux, R., Suspène, R., Delebecque, F., Henry, M., Schwartz, O., Wain-Hobson, S. & Vartanian, J. P. 2005 Extensive editing of a small fraction of human T-cell leukemia virus type 1 genomes by four APOBEC3 cytidine deaminases. J. Gen. Virol. 86, 2489-2494. (doi:10.1099/vir.0. 80973-0)
-
(2005)
J. Gen. Virol
, vol.86
, pp. 2489-2494
-
-
Mahieux, R.1
Suspène, R.2
Delebecque, F.3
Henry, M.4
Schwartz, O.5
Wain-Hobson, S.6
Vartanian, J.P.7
-
54
-
-
0038681023
-
Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts
-
doi:10.1038/nature01709
-
Mangeat, B., Turelli, P., Caron, G., Friedli, M., Perrin, L. & Trono, D. 2003 Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. Nature 424, 99-103. (doi:10.1038/nature01709)
-
(2003)
Nature
, vol.424
, pp. 99-103
-
-
Mangeat, B.1
Turelli, P.2
Caron, G.3
Friedli, M.4
Perrin, L.5
Trono, D.6
-
55
-
-
0038107587
-
Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif
-
doi:10.1016/S0092-8674(03)00515-4
-
Mariani, R., Chen, D., Schrofelbauer, B., Navarro, F., Konig, R., Bollman, B., Munk, C., Nymark-McMahon, H. & Landau, N. R. 2003 Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif. Cell 114, 21-31. (doi:10.1016/S0092-8674(03)00515-4)
-
(2003)
Cell
, vol.114
, pp. 21-31
-
-
Mariani, R.1
Chen, D.2
Schrofelbauer, B.3
Navarro, F.4
Konig, R.5
Bollman, B.6
Munk, C.7
Nymark-McMahon, H.8
Landau, N.R.9
-
56
-
-
43049116095
-
Aberrant AID expression and human cancer development
-
doi:10.1016/j.biocel. 2008.01.018
-
Marusawa, H. 2008 Aberrant AID expression and human cancer development. Int. J. Biochem. Cell. Biol. 40, 1399-1402. (doi:10.1016/j.biocel. 2008.01.018)
-
(2008)
Int. J. Biochem. Cell. Biol
, vol.40
, pp. 1399-1402
-
-
Marusawa, H.1
-
57
-
-
34147180434
-
Helicobacter pylori infection triggers aberrant expression of activation-induced cytidine deaminase in gastric epithelium
-
doi:10.1038/nm1566
-
Matsumoto, Y. et al. 2007 Helicobacter pylori infection triggers aberrant expression of activation-induced cytidine deaminase in gastric epithelium. Nat. Med. 13, 470-476. (doi:10.1038/nm1566)
-
(2007)
Nat. Med
, vol.13
, pp. 470-476
-
-
Matsumoto, Y.1
-
58
-
-
0014935646
-
Natural selection and the concept of a protein space
-
doi:10.1038/225563a0
-
Maynard Smith, J. 1970 Natural selection and the concept of a protein space. Nature 225, 563-564. (doi:10.1038/225563a0)
-
(1970)
Nature
, vol.225
, pp. 563-564
-
-
Maynard Smith, J.1
-
59
-
-
0024469503
-
Temporal fluctuations in HIV quasispecies in vivo are not reflected by sequential HIV isolations
-
doi:10.1016/0092-8674(89)90942-2
-
Meyerhans, A., Cheynier, R., Albert, J., Seth, M., Kwok, S., Sninsky, J., Morfeldt-Manson, L., Asjo, B. & Wain-Hobson, S. 1989 Temporal fluctuations in HIV quasispecies in vivo are not reflected by sequential HIV isolations. Cell 58, 901-910. (doi:10.1016/0092-8674(89)90942-2)
-
(1989)
Cell
, vol.58
, pp. 901-910
-
-
Meyerhans, A.1
Cheynier, R.2
Albert, J.3
Seth, M.4
Kwok, S.5
Sninsky, J.6
Morfeldt-Manson, L.7
Asjo, B.8
Wain-Hobson, S.9
-
60
-
-
23344440307
-
Mice deficient in APOBEC2 and APOBEC3
-
doi:10.1128/MCB.25.16.7270-7277.2005
-
Mikl, M. C., Watt, I. N., Lu, M., Reik, W., Davies, S. L., Neuberger, M. S. & Rada, C. 2005 Mice deficient in APOBEC2 and APOBEC3. Mol. Cell Biol. 16, 7270-7277. (doi:10.1128/MCB.25.16.7270-7277.2005)
-
(2005)
Mol. Cell Biol
, vol.16
, pp. 7270-7277
-
-
Mikl, M.C.1
Watt, I.N.2
Lu, M.3
Reik, W.4
Davies, S.L.5
Neuberger, M.S.6
Rada, C.7
-
61
-
-
57349179128
-
Organ-specific profiles of genetic changes in cancers caused by activation-induced cytidine deaminase expression
-
doi:10.1002/ijc.23853
-
Morisawa, T., Marusawa, H., Ueda, Y., Iwai, A., Okazaki, I. M., Honjo, T. & Chiba, T. 2008 Organ-specific profiles of genetic changes in cancers caused by activation-induced cytidine deaminase expression. Int. J. Cancer 123, 2735-2740. (doi:10.1002/ijc.23853)
-
(2008)
Int. J. Cancer
, vol.123
, pp. 2735-2740
-
-
Morisawa, T.1
Marusawa, H.2
Ueda, Y.3
Iwai, A.4
Okazaki, I.M.5
Honjo, T.6
Chiba, T.7
-
62
-
-
33746792780
-
APOBEC3 proteins inhibit human LINE-1 retrotransposition
-
doi:10.1074/jbc.M601716200
-
Muckenfuss, H., Hamdorf, M., Held, U., Perkovic, M., Lower, J., Cichutek, K., Flory, E., Schumann, G. G. & Munk, C. 2006 APOBEC3 proteins inhibit human LINE-1 retrotransposition. J. Biol. Chem. 281, 22161-22172. (doi:10.1074/jbc.M601716200)
-
(2006)
J. Biol. Chem
, vol.281
, pp. 22161-22172
-
-
Muckenfuss, H.1
Hamdorf, M.2
Held, U.3
Perkovic, M.4
Lower, J.5
Cichutek, K.6
Flory, E.7
Schumann, G.G.8
Munk, C.9
-
63
-
-
0033603340
-
Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells
-
doi:10.1074/jbc.274.26.18470
-
Muramatsu, M., Sankaranand, V. S., Anant, S., Sugai, M., Kinoshita, K., Davidson, N. O. & Honjo, T. 1999 Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells. J. Biol. Chem. 274, 18470-18476. (doi:10.1074/jbc.274.26.18470)
-
(1999)
J. Biol. Chem
, vol.274
, pp. 18470-18476
-
-
Muramatsu, M.1
Sankaranand, V.S.2
Anant, S.3
Sugai, M.4
Kinoshita, K.5
Davidson, N.O.6
Honjo, T.7
-
64
-
-
0034268780
-
Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme
-
doi:10.1016/S0092-8674(00)00078-7
-
Muramatsu, M., Kinoshita, K., Fagarasan, S., Yamada, S., Shinkai, Y. & Honjo, T. 2000 Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell 102, 553-563. (doi:10.1016/S0092-8674(00)00078-7)
-
(2000)
Cell
, vol.102
, pp. 553-563
-
-
Muramatsu, M.1
Kinoshita, K.2
Fagarasan, S.3
Yamada, S.4
Shinkai, Y.5
Honjo, T.6
-
65
-
-
14244254668
-
G to A hypermutation of hepatitis B virus
-
doi:10.1002/hep.20580
-
Noguchi, C., Ishino, H., Tsuge, M., Fujimoto, Y., Imamura, M., Takahashi, S. & Chayama, K. 2005 G to A hypermutation of hepatitis B virus. Hepatology 41, 626-633. (doi:10.1002/hep.20580)
-
(2005)
Hepatology
, vol.41
, pp. 626-633
-
-
Noguchi, C.1
Ishino, H.2
Tsuge, M.3
Fujimoto, Y.4
Imamura, M.5
Takahashi, S.6
Chayama, K.7
-
66
-
-
33645760962
-
Adaptive evolution and antiviral activity of the conserved mammalian cytidine deaminase APOBEC3H
-
doi:10.1128/JVI.80.8.3853- 3862.2006
-
OhAinle, M., Kerns, J. A., Malik, H. S. & Emerman, M. 2006 Adaptive evolution and antiviral activity of the conserved mammalian cytidine deaminase APOBEC3H. J. Virol. 80, 3853-3862. (doi:10.1128/JVI.80.8.3853- 3862.2006)
-
(2006)
J. Virol
, vol.80
, pp. 3853-3862
-
-
OhAinle, M.1
Kerns, J.A.2
Malik, H.S.3
Emerman, M.4
-
67
-
-
50849100134
-
Antiretroelement activity of APOBEC3H was lost twice in recent human evolution
-
doi:10.1016/j.chom.2008.07.005
-
OhAinle, M., Kerns, J. A., Li, M. M., Malik, H. S. & Emerman, M. 2008 Antiretroelement activity of APOBEC3H was lost twice in recent human evolution. Cell Host Microbe 4, 249-259. (doi:10.1016/j.chom.2008.07.005)
-
(2008)
Cell Host Microbe
, vol.4
, pp. 249-259
-
-
OhAinle, M.1
Kerns, J.A.2
Li, M.M.3
Malik, H.S.4
Emerman, M.5
-
68
-
-
33847200788
-
APOBEC3 inhibits mouse mammary tumour virus replication in vivo
-
doi:10.1038/nature05540
-
Okeoma, C. M., Lovsin, N., Peterlin, B. M. & Ross, S. R. 2007 APOBEC3 inhibits mouse mammary tumour virus replication in vivo. Nature 445, 927-930. (doi:10.1038/nature05540)
-
(2007)
Nature
, vol.445
, pp. 927-930
-
-
Okeoma, C.M.1
Lovsin, N.2
Peterlin, B.M.3
Ross, S.R.4
-
69
-
-
33644745237
-
Identification and characterization of an exogenous retrovirus from atlantic salmon swim bladder sarcomas
-
doi:10.1128/JVI.80.6.2941-2948.2006
-
Paul, T. A., Quackenbush, S. L., Sutton, C., Casey, R. N., Bowser, P. R. & Casey, J. W. 2006 Identification and characterization of an exogenous retrovirus from atlantic salmon swim bladder sarcomas. J. Virol. 80, 2941-2948. (doi:10.1128/JVI.80.6.2941-2948.2006)
-
(2006)
J. Virol
, vol.80
, pp. 2941-2948
-
-
Paul, T.A.1
Quackenbush, S.L.2
Sutton, C.3
Casey, R.N.4
Bowser, P.R.5
Casey, J.W.6
-
70
-
-
31944438580
-
Induction of APOBEC3 family proteins, a defensive maneuver underlying interferon-induced anti-HIV-1 activity
-
doi:10.1084/jem.20051512
-
Peng, G., Lei, K. J., Jin, W., Greenwell-Wild, T. & Wahl, S. M. 2006 Induction of APOBEC3 family proteins, a defensive maneuver underlying interferon-induced anti-HIV-1 activity. J. Exp. Med. 203, 41-46. (doi:10.1084/jem.20051512)
-
(2006)
J. Exp. Med
, vol.203
, pp. 41-46
-
-
Peng, G.1
Lei, K.J.2
Jin, W.3
Greenwell-Wild, T.4
Wahl, S.M.5
-
71
-
-
0038375028
-
In vitro deamination of cytosine to uracil in single-stranded DNA by apolipoprotein B editing complex catalytic subunit 1 (APOBEC1)
-
doi:10.1074/jbc.C300114200
-
Petersen-Mahrt, S. K. & Neuberger, M. S. 2003 In vitro deamination of cytosine to uracil in single-stranded DNA by apolipoprotein B editing complex catalytic subunit 1 (APOBEC1). J. Biol. Chem. 278, 19 583-19 586. (doi:10.1074/jbc.C300114200)
-
(2003)
J. Biol. Chem
, vol.278
-
-
Petersen-Mahrt, S.K.1
Neuberger, M.S.2
-
72
-
-
57749198859
-
Murine APOBEC1 is a powerful mutator of retroviral and cellular RNA in vitro and in vivo
-
doi:10.1016/j.jmb.2008.10.043
-
Petit, V., Guétard, D., Renard, M., Keriel, A., Sitbon, M., Wain-Hobson, S. & Vartanian, J. P. 2009 Murine APOBEC1 is a powerful mutator of retroviral and cellular RNA in vitro and in vivo. J. Mol. Biol. 385, 65-78. (doi:10.1016/j.jmb.2008.10.043)
-
(2009)
J. Mol. Biol
, vol.385
, pp. 65-78
-
-
Petit, V.1
Guétard, D.2
Renard, M.3
Keriel, A.4
Sitbon, M.5
Wain-Hobson, S.6
Vartanian, J.P.7
-
73
-
-
0023651359
-
A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine
-
doi:10.1016/0092-8674(87)90510-1
-
Powell, L. M., Wallis, S. C., Pease, R. J., Edwards, Y. H., Knott, T. J. & Scott, J. 1987 A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine. Cell 50, 831-840. (doi:10.1016/0092-8674(87)90510-1)
-
(1987)
Cell
, vol.50
, pp. 831-840
-
-
Powell, L.M.1
Wallis, S.C.2
Pease, R.J.3
Edwards, Y.H.4
Knott, T.J.5
Scott, J.6
-
74
-
-
33846555779
-
The APOBEC-2 crystal structure and functional implications for the deaminase AID
-
doi:10.1038/nature05492
-
Prochnow, C., Bransteitter, R., Klein, M. G., Goodman, M. F. & Chen, X. S. 2007 The APOBEC-2 crystal structure and functional implications for the deaminase AID. Nature 445, 447-451. (doi:10.1038/nature05492)
-
(2007)
Nature
, vol.445
, pp. 447-451
-
-
Prochnow, C.1
Bransteitter, R.2
Klein, M.G.3
Goodman, M.F.4
Chen, X.S.5
-
75
-
-
25444527785
-
APOBEC4, a new member of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases predicted by computational analysis
-
Rogozin, I. B., Basu, M. K., Jordan, I. K., Pavlov, Y. I. & Koonin, E. V. 2005 APOBEC4, a new member of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases predicted by computational analysis. Cell Cycle 4, 1281-1285.
-
(2005)
Cell Cycle
, vol.4
, pp. 1281-1285
-
-
Rogozin, I.B.1
Basu, M.K.2
Jordan, I.K.3
Pavlov, Y.I.4
Koonin, E.V.5
-
76
-
-
45749088955
-
Interactions of murine APOBEC3 and human APOBEC3G with murine leukemia viruses
-
doi:10.1128/JVI.01357-07
-
Rulli Jr, S. J., Mirro, J., Hill, S. A., Lloyd, P., Gorelick, R. J., Coffin, J. M., Derse, D. & Rein, A. 2008 Interactions of murine APOBEC3 and human APOBEC3G with murine leukemia viruses. J. Virol. 82, 6566-6575. (doi:10.1128/JVI.01357-07)
-
(2008)
J. Virol
, vol.82
, pp. 6566-6575
-
-
Rulli Jr, S.J.1
Mirro, J.2
Hill, S.A.3
Lloyd, P.4
Gorelick, R.J.5
Coffin, J.M.6
Derse, D.7
Rein, A.8
-
77
-
-
0034767753
-
Antiviral actions of interferons
-
doi:10.1128/CMR.14.4.778-809.2001
-
Samuel, C. E. 2001 Antiviral actions of interferons. Clin. Microbiol. Rev. 14, 778-809. (doi:10.1128/CMR.14.4.778-809.2001)
-
(2001)
Clin. Microbiol. Rev
, vol.14
, pp. 778-809
-
-
Samuel, C.E.1
-
78
-
-
51149120614
-
APOBEC3 encodes Rfv3, a gene influencing neutralizing antibody control of retrovirus infection
-
doi:10.1126/science.1161121
-
Santiago, M. L., Montano, M., Benitez, R., Messer, R. J., Yonemoto, W., Chesebro, B., Hasenkrug, K. J. & Greene, W. C. 2008 APOBEC3 encodes Rfv3, a gene influencing neutralizing antibody control of retrovirus infection. Science 321, 1343-1346. (doi:10.1126/science.1161121)
-
(2008)
Science
, vol.321
, pp. 1343-1346
-
-
Santiago, M.L.1
Montano, M.2
Benitez, R.3
Messer, R.J.4
Yonemoto, W.5
Chesebro, B.6
Hasenkrug, K.J.7
Greene, W.C.8
-
79
-
-
22144444302
-
The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage
-
doi:10.1038/nsmb936
-
Scadden, A. D. 2005 The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage. Nat. Struct. Mol. Biol. 12, 489-496. (doi:10.1038/nsmb936)
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 489-496
-
-
Scadden, A.D.1
-
80
-
-
0026772612
-
Subacute sclerosing panencephalitis is typically characterized by alterations in the fusion protein cytoplasmic domain of the persisting measles virus
-
doi:10.1016/0042-6822(92)90552-Z
-
Schmid, A., Spielhofer, P., Cattaneo, R., Baczko, K., ter Meulen, V. & Billeter, M. A. 1992 Subacute sclerosing panencephalitis is typically characterized by alterations in the fusion protein cytoplasmic domain of the persisting measles virus. Virology 188, 910-915. (doi:10.1016/0042-6822(92)90552-Z)
-
(1992)
Virology
, vol.188
, pp. 910-915
-
-
Schmid, A.1
Spielhofer, P.2
Cattaneo, R.3
Baczko, K.4
ter Meulen, V.5
Billeter, M.A.6
-
81
-
-
22244448696
-
APOBEC3G hypermutates genomic DNA and inhibits Ty1 retrotransposition in yeast
-
doi:10.1073/pnas.0501694102
-
Schumacher, A. J., Nissley, D. V. & Harris, R. S. 2005 APOBEC3G hypermutates genomic DNA and inhibits Ty1 retrotransposition in yeast. Proc. Natl Acad. Sci. USA 102, 9854-9859. (doi:10.1073/pnas.0501694102)
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 9854-9859
-
-
Schumacher, A.J.1
Nissley, D.V.2
Harris, R.S.3
-
82
-
-
40149102165
-
The DNA deaminase activity of human APOBEC3G is required for Ty1, MusD, and human immunodeficiency virus type 1 restriction
-
doi:10.1128/JVI.02391-07
-
Schumacher, A. J., Hache, G., Macduff, D. A., Brown, W. L. & Harris, R. S. 2008 The DNA deaminase activity of human APOBEC3G is required for Ty1, MusD, and human immunodeficiency virus type 1 restriction. J. Virol. 82, 2652-2660. (doi:10.1128/JVI.02391-07)
-
(2008)
J. Virol
, vol.82
, pp. 2652-2660
-
-
Schumacher, A.J.1
Hache, G.2
Macduff, D.A.3
Brown, W.L.4
Harris, R.S.5
-
83
-
-
0037043699
-
Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
-
doi:10.1038/nature00939
-
Sheehy, A. M., Gaddis, N. C., Choi, J. D. & Malim, M. H. 2002 Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature 418, 646-650. (doi:10.1038/nature00939)
-
(2002)
Nature
, vol.418
, pp. 646-650
-
-
Sheehy, A.M.1
Gaddis, N.C.2
Choi, J.D.3
Malim, M.H.4
-
84
-
-
0347949569
-
Genome structure and thymic expression of an endogenous retrovirus in zebrafish
-
doi:10.1128/JVI.78.2.899-911.2004
-
Shen, C. H. & Steiner, L. A. 2004 Genome structure and thymic expression of an endogenous retrovirus in zebrafish. J. Virol. 78, 899-911. (doi:10.1128/JVI.78.2.899-911.2004)
-
(2004)
J. Virol
, vol.78
, pp. 899-911
-
-
Shen, C.H.1
Steiner, L.A.2
-
85
-
-
2342469410
-
APOBEC3G is a single-stranded DNA cytidine deaminase and functions independently of HIV reverse transcriptase
-
doi:10.1093/nar/gkh554
-
Suspène, R. et al. 2004 APOBEC3G is a single-stranded DNA cytidine deaminase and functions independently of HIV reverse transcriptase. Nucleic Acids Res. 32, 2421-2429. (doi:10.1093/nar/gkh554)
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2421-2429
-
-
Suspène, R.1
-
86
-
-
20444416733
-
Extensive editing of both hepatitis B virus DNA strands by APOBEC3 cytidine deaminases in vitro and in vivo
-
doi:10.1073/pnas.0408223102
-
Suspène, R., Guétard, D., Henry, M., Sommer, P., Wain-Hobson, S. & Vartanian, J. P. 2005a Extensive editing of both hepatitis B virus DNA strands by APOBEC3 cytidine deaminases in vitro and in vivo. Proc. Natl Acad. Sci. USA 102, 8321-8326. (doi:10.1073/pnas.0408223102)
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 8321-8326
-
-
Suspène, R.1
Guétard, D.2
Henry, M.3
Sommer, P.4
Wain-Hobson, S.5
Vartanian, J.P.6
-
87
-
-
11444249832
-
Recovery of APOBEC3-edited human immunodeficiency virus G→A hypermutants by differential DNA denaturation PCR
-
doi:10.1099/vir.0.80426-0
-
Suspène, R., Henry, M., Guillot, S., Wain-Hobson, S. & Vartanian, J. P. 2005b Recovery of APOBEC3-edited human immunodeficiency virus G→A hypermutants by differential DNA denaturation PCR. J. Gen. Virol. 86, 125-129. (doi:10.1099/vir.0.80426-0)
-
(2005)
J. Gen. Virol
, vol.86
, pp. 125-129
-
-
Suspène, R.1
Henry, M.2
Guillot, S.3
Wain-Hobson, S.4
Vartanian, J.P.5
-
88
-
-
33750210516
-
Twin gradients in APOBEC3 edited HIV-1 DNA reflect the dynamics of lentiviral replication
-
doi:10.1093/nar/gkl555
-
Suspène, R., Rusniok, C., Vartanian, J. P. & Wain-Hobson, S. 2006 Twin gradients in APOBEC3 edited HIV-1 DNA reflect the dynamics of lentiviral replication. Nucleic Acids Res. 34, 4677-4684. (doi:10.1093/nar/gkl555)
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4677-4684
-
-
Suspène, R.1
Rusniok, C.2
Vartanian, J.P.3
Wain-Hobson, S.4
-
89
-
-
47249110357
-
Inversing the natural hydrogen bonding rule to selectively amplify GC-rich ADAR-edited RNAs
-
doi:10.1093/nar/gkn295
-
Suspène, R. et al. 2008 Inversing the natural hydrogen bonding rule to selectively amplify GC-rich ADAR-edited RNAs. Nucleic Acids Res. 36, e72. (doi:10.1093/nar/gkn295)
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Suspène, R.1
-
90
-
-
55549083514
-
Mouse APOBEC3 restricts Friend leukemia virus infection and pathogenesis in vivo
-
doi:10.1128/JVI.01311-08
-
Takeda, E., Tsuji-Kawahara, S., Sakamoto, M., Langlois, M. A., Neuberger, M. S., Rada, C. & Miyazawa, M. 2008 Mouse APOBEC3 restricts Friend leukemia virus infection and pathogenesis in vivo. J. Virol. 82, 10998. (doi:10.1128/JVI.01311-08)
-
(2008)
J. Virol
, vol.82
, pp. 10998
-
-
Takeda, E.1
Tsuji-Kawahara, S.2
Sakamoto, M.3
Langlois, M.A.4
Neuberger, M.S.5
Rada, C.6
Miyazawa, M.7
-
91
-
-
31444449299
-
Anti-viral protein APOBEC3G is induced by interferon-alpha stimulation in human hepatocytes
-
doi:10.1016/j.bbrc.2005.12.192
-
Tanaka, Y. et al. 2006 Anti-viral protein APOBEC3G is induced by interferon-alpha stimulation in human hepatocytes. Biochem. Biophys. Res. Commun. 341, 314-319. (doi:10.1016/j.bbrc.2005.12.192)
-
(2006)
Biochem. Biophys. Res. Commun
, vol.341
, pp. 314-319
-
-
Tanaka, Y.1
-
92
-
-
33646127805
-
Gene array expression profiling in acne lesions reveals marked upregulation of genes involved in inflammation and matrix remodeling
-
doi:10.1038/sj.jid.5700213
-
Trivedi, N. R., Gilliland, K. L., Zhao, W., Liu, W. & Thiboutot, D. M. 2006 Gene array expression profiling in acne lesions reveals marked upregulation of genes involved in inflammation and matrix remodeling. J. Invest. Dermatol. 126, 1071-1079. (doi:10.1038/sj.jid.5700213)
-
(2006)
J. Invest. Dermatol
, vol.126
, pp. 1071-1079
-
-
Trivedi, N.R.1
Gilliland, K.L.2
Zhao, W.3
Liu, W.4
Thiboutot, D.M.5
-
93
-
-
23944466443
-
ADAR gene family and Ato-I RNA editing: Diverse roles in posttranscriptional gene regulation
-
Valente, L. & Nishikura, K. 2005 ADAR gene family and Ato-I RNA editing: diverse roles in posttranscriptional gene regulation. Prog. Nucleic Acid Res. Mol. Biol. 79, 299-338.
-
(2005)
Prog. Nucleic Acid Res. Mol. Biol
, vol.79
, pp. 299-338
-
-
Valente, L.1
Nishikura, K.2
-
94
-
-
0030739032
-
HIV genetic variation is directed and restricted by DNA precursor availability
-
doi:10.1006/jmbi.1997.1104
-
Vartanian, J. P., Plikat, U., Henry, M., Mahieux, R., Guillemot, L., Meyerhans, A. & Wain-Hobson, S. 1997 HIV genetic variation is directed and restricted by DNA precursor availability. J. Mol. Biol. 270, 139-151. (doi:10.1006/jmbi.1997.1104)
-
(1997)
J. Mol. Biol
, vol.270
, pp. 139-151
-
-
Vartanian, J.P.1
Plikat, U.2
Henry, M.3
Mahieux, R.4
Guillemot, L.5
Meyerhans, A.6
Wain-Hobson, S.7
-
95
-
-
0036009548
-
Sustained G→A hypermutation during reverse transcription of an entire human immunodeficiency virus type 1 strain Vau group O genome
-
Vartanian, J. P., Henry, M. & Wain-Hobson, S. 2002 Sustained G→A hypermutation during reverse transcription of an entire human immunodeficiency virus type 1 strain Vau group O genome. J. Gen. Virol. 83, 801-805.
-
(2002)
J. Gen. Virol
, vol.83
, pp. 801-805
-
-
Vartanian, J.P.1
Henry, M.2
Wain-Hobson, S.3
-
96
-
-
42049096136
-
Evidence for editing of human papillomavirus DNA by APOBEC3 in benign and precancerous lesions
-
doi:10.1126/science. 1153201
-
Vartanian, J. P., Guétard, D., Henry, M. & Wain-Hobson, S. 2008 Evidence for editing of human papillomavirus DNA by APOBEC3 in benign and precancerous lesions. Science 320, 230-233. (doi:10.1126/science. 1153201)
-
(2008)
Science
, vol.320
, pp. 230-233
-
-
Vartanian, J.P.1
Guétard, D.2
Henry, M.3
Wain-Hobson, S.4
-
97
-
-
31844454797
-
The third bond
-
doi:10.1038/439539a
-
Wain-Hobson, S. 2006 The third bond. Nature 439, 539. (doi:10.1038/439539a)
-
(2006)
Nature
, vol.439
, pp. 539
-
-
Wain-Hobson, S.1
-
98
-
-
3242712200
-
A second human antiretroviral factor, APOBEC3F, is suppressed by the HIV-1 and HIV-2 Vif proteins
-
doi:10.1038/sj.emboj. 7600246
-
Wiegand, H. L., Doehle, B. P., Bogerd, H. P. & Cullen, B. R. 2004 A second human antiretroviral factor, APOBEC3F, is suppressed by the HIV-1 and HIV-2 Vif proteins. EMBO J. 23, 2451-2458. (doi:10.1038/sj.emboj. 7600246)
-
(2004)
EMBO J
, vol.23
, pp. 2451-2458
-
-
Wiegand, H.L.1
Doehle, B.P.2
Bogerd, H.P.3
Cullen, B.R.4
-
99
-
-
0029159759
-
Apolipoprotein B mRNA-editing protein induces hepatocellular carcinoma and dysplasia in transgenic animals
-
doi:10.1073/pnas.92.18.8483
-
Yamanaka, S., Balestra, M. E., Ferrell, L. D., Fan, J., Arnold, K. S., Taylor, S., Taylor, J. M. & Innerarity, T. L. 1995 Apolipoprotein B mRNA-editing protein induces hepatocellular carcinoma and dysplasia in transgenic animals. Proc. Natl Acad. Sci. USA 92, 8483-8487. (doi:10.1073/pnas.92.18.8483)
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 8483-8487
-
-
Yamanaka, S.1
Balestra, M.E.2
Ferrell, L.D.3
Fan, J.4
Arnold, K.S.5
Taylor, S.6
Taylor, J.M.7
Innerarity, T.L.8
-
100
-
-
2342633240
-
Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome
-
doi:10.1038/nsmb758
-
Yu, Q., Konig, R., Pillai, S., Chiles, K., Kearney, M., Palmer, S., Richman, D., Coffin, J. M. & Landau, N. R. 2004 Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome. Nat. Struct. Mol. Biol. 11, 435-442. (doi:10.1038/nsmb758)
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 435-442
-
-
Yu, Q.1
Konig, R.2
Pillai, S.3
Chiles, K.4
Kearney, M.5
Palmer, S.6
Richman, D.7
Coffin, J.M.8
Landau, N.R.9
-
101
-
-
0038004471
-
The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA
-
doi:10.1038/ nature01707
-
Zhang, H., Yang, B., Pomerantz, R. J., Zhang, C., Arunachalam, S. C. & Gao, L. 2003 The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA. Nature 424, 94-98. (doi:10.1038/ nature01707)
-
(2003)
Nature
, vol.424
, pp. 94-98
-
-
Zhang, H.1
Yang, B.2
Pomerantz, R.J.3
Zhang, C.4
Arunachalam, S.C.5
Gao, L.6
-
102
-
-
2442692812
-
Human APOBEC3F is another host factor that blocks human immunodeficiency virus type 1 replication
-
doi:10.1128/JVI.78.11.6073-6076.2004
-
Zheng, Y. H., Irwin, D., Kurosu, T., Tokunaga, K., Sata, T. & Peterlin, B. M. 2004 Human APOBEC3F is another host factor that blocks human immunodeficiency virus type 1 replication. J. Virol. 78, 6073-6076. (doi:10.1128/JVI.78.11.6073-6076.2004)
-
(2004)
J. Virol
, vol.78
, pp. 6073-6076
-
-
Zheng, Y.H.1
Irwin, D.2
Kurosu, T.3
Tokunaga, K.4
Sata, T.5
Peterlin, B.M.6
|