메뉴 건너뛰기




Volumn 13, Issue 1, 2013, Pages

Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve the position of Equisetales among monilophytes

Author keywords

[No Author keywords available]

Indexed keywords

COMPARATIVE STUDY; EVOLUTION; FERN; GENOME; LAND SURFACE; MITOCHONDRION; PHYLOGENETICS; PLANT COMMUNITY;

EID: 84872124943     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-13-8     Document Type: Article
Times cited : (94)

References (54)
  • 1
    • 79957927000 scopus 로고    scopus 로고
    • The evolution of the plastid chromosome in land plants: Gene content, gene order, gene function
    • 10.1007/s11103-011-9762-4 21424877
    • The evolution of the plastid chromosome in land plants: gene content, gene order, gene function. Wicke S, Schneeweiss GM, DePamphilis CW, Muller KF, Quandt D, Plant Mol Biol 2011 76 273 297 10.1007/s11103-011-9762-4 21424877
    • (2011) Plant Mol Biol , vol.76 , pp. 273-297
    • Wicke, S.1    Schneeweiss, G.M.2    Depamphilis, C.W.3    Muller, K.F.4    Quandt, D.5
  • 3
    • 84872847039 scopus 로고    scopus 로고
    • Plastomes of bryophytes, lycophytes and ferns
    • Springer Netherlands: Springer Bock R, Knoop V 35
    • Plastomes of bryophytes, lycophytes and ferns. Wolf PG, Karol KG, Genomics of Chloroplasts and Mitochondria Springer Netherlands: Springer, Bock R, Knoop V, 35 2012 89 102
    • (2012) Genomics of Chloroplasts and Mitochondria , pp. 89-102
    • Wolf, P.G.1    Karol, K.G.2
  • 4
    • 0026447426 scopus 로고
    • Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant
    • 10.1073/pnas.89.22.10648 1332054
    • Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant. Wolfe KH, Morden CW, Palmer JD, Proc Natl Acad Sci USA 1992 89 10648 10652 10.1073/pnas.89.22.10648 1332054
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 10648-10652
    • Wolfe, K.H.1    Morden, C.W.2    Palmer, J.D.3
  • 6
    • 79957572067 scopus 로고    scopus 로고
    • Rampant gene loss in the underground orchid Rhizanthella gardneri highlights evolutionary constraints on plastid genomes
    • 10.1093/molbev/msr028 21289370
    • Rampant gene loss in the underground orchid Rhizanthella gardneri highlights evolutionary constraints on plastid genomes. Delannoy E, Fujii S, Colas Des Francs Small C, Brundrett M, Small I, Mol Biol Evol 2011 28 2077 2086 10.1093/molbev/msr028 21289370
    • (2011) Mol Biol Evol , vol.28 , pp. 2077-2086
    • Delannoy, E.1    Fujii, S.2    Colas Des Francs Small, C.3    Brundrett, M.4    Small, I.5
  • 7
    • 67349254201 scopus 로고    scopus 로고
    • Loss of all plastid ndh genes in Gnetales and conifers: Extent and evolutionary significance for the seed plant phylogeny
    • 10.1007/s00294-009-0249-7 19449185
    • Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny. Braukmann TW, Kuzmina M, Stefanovic S, Curr Genet 2009 55 323 337 10.1007/s00294-009-0249-7 19449185
    • (2009) Curr Genet , vol.55 , pp. 323-337
    • Braukmann, T.W.1    Kuzmina, M.2    Stefanovic, S.3
  • 8
    • 79957873740 scopus 로고    scopus 로고
    • Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae)
    • 10.1007/s11103-011-9753-5 21327834
    • Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae). Blazier CJ, Guisinger MM, Jansen RK, Plant Mol Biol 2011 76 263 272 10.1007/s11103-011-9753-5 21327834
    • (2011) Plant Mol Biol , vol.76 , pp. 263-272
    • Blazier, C.J.1    Guisinger, M.M.2    Jansen, R.K.3
  • 9
    • 43149125849 scopus 로고    scopus 로고
    • Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes
    • 10.1007/s00239-008-9086-4 18330485
    • Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes. Haberle RC, Fourcade HM, Boore JL, Jansen RK, J Mol Evol 2008 66 350 361 10.1007/s00239-008-9086-4 18330485
    • (2008) J Mol Evol , vol.66 , pp. 350-361
    • Haberle, R.C.1    Fourcade, H.M.2    Boore, J.L.3    Jansen, R.K.4
  • 10
    • 65349104518 scopus 로고    scopus 로고
    • Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions
    • 10.1007/s00239-008-9180-7 19018585
    • Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions. Cai Z, Guisinger M, Kim HG, Ruck E, Blazier JC, McMurtry V, Kuehl JV, Boore J, Jansen RK, J Mol Evol 2008 67 696 704 10.1007/s00239-008-9180-7 19018585
    • (2008) J Mol Evol , vol.67 , pp. 696-704
    • Cai, Z.1    Guisinger, M.2    Kim, H.G.3    Ruck, E.4    Blazier, J.C.5    McMurtry, V.6    Kuehl, J.V.7    Boore, J.8    Jansen, R.K.9
  • 11
    • 78650446228 scopus 로고    scopus 로고
    • Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: Rearrangements, repeats, and codon usage
    • 10.1093/molbev/msq229 20805190
    • Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage. Guisinger MM, Kuehl JV, Boore JL, Jansen RK, Mol Biol Evol 2011 28 583 600 10.1093/molbev/msq229 20805190
    • (2011) Mol Biol Evol , vol.28 , pp. 583-600
    • Guisinger, M.M.1    Kuehl, J.V.2    Boore, J.L.3    Jansen, R.K.4
  • 12
    • 18044370145 scopus 로고    scopus 로고
    • A phylogeny of legumes (Leguminosae) based on analysis of the plastid matK gene resolves many well-supported subclades within the family
    • A phylogeny of legumes (Leguminosae) based on analysis of the plastid matK gene resolves many well-supported subclades within the family. Wojciechowski MF, Lavin M, Sanderson MJ, Am J Bot 2004 91 1846 1862 10.3732/ajb.91.11.1846 21652332 (Pubitemid 43186482)
    • (2004) American Journal of Botany , vol.91 , Issue.11 , pp. 1846-1862
    • Wojciechowski, M.F.1    Lavin, M.2    Sanderson, M.J.3
  • 13
    • 84855848337 scopus 로고    scopus 로고
    • Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny
    • 10.1093/gbe/evr095 21933779
    • Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny. Wu CS, Wang YN, Hsu CY, Lin CP, Chaw SM, Genome Biol Evol 2011 3 1284 1295 10.1093/gbe/evr095 21933779
    • (2011) Genome Biol Evol , vol.3 , pp. 1284-1295
    • Wu, C.S.1    Wang, Y.N.2    Hsu, C.Y.3    Lin, C.P.4    Chaw, S.M.5
  • 17
    • 37549054628 scopus 로고    scopus 로고
    • Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
    • 10.1073/pnas.0708072104 18048334
    • Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Moore MJ, Bell CD, Soltis PS, Soltis DE, Proc Natl Acad Sci USA 2007 104 19363 19368 10.1073/pnas.0708072104 18048334
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 19363-19368
    • Moore, M.J.1    Bell, C.D.2    Soltis, P.S.3    Soltis, D.E.4
  • 20
    • 78649362791 scopus 로고    scopus 로고
    • The position of Gnetales among seed plants: Overcoming pitfalls of chloroplast phylogenomics
    • 10.1093/molbev/msq170 20601411
    • The position of Gnetales among seed plants: overcoming pitfalls of chloroplast phylogenomics. Zhong B, Yonezawa T, Zhong Y, Hasegawa M, Mol Biol Evol 2010 27 2855 2863 10.1093/molbev/msq170 20601411
    • (2010) Mol Biol Evol , vol.27 , pp. 2855-2863
    • Zhong, B.1    Yonezawa, T.2    Zhong, Y.3    Hasegawa, M.4
  • 21
    • 0035252353 scopus 로고    scopus 로고
    • Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants
    • DOI 10.1038/35054555
    • Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants. Pryer KM, Schneider H, Smith AR, Cranfill R, Wolf PG, Hunt JS, Sipes SD, Nature 2001 409 618 622 10.1038/35054555 11214320 (Pubitemid 32154813)
    • (2001) Nature , vol.409 , Issue.6820 , pp. 618-621
    • Pryer, K.M.1    Schneider, H.2    Smith, A.R.3    Cranfill, R.4    Wolf, P.G.5    Hunt, J.S.6    Sipes, S.D.7
  • 22
    • 23744507531 scopus 로고    scopus 로고
    • Phylogeny and evolution of ferns (monilophytes) with a focus on the early leptosporangiate divergences
    • Phylogeny and evolution of ferns (monilophytes) with a focus on the early leptosporangiate divergences. Pryer KM, Schuettpelz E, Wolf PG, Schneider H, Smith AR, Cranfill R, Am J Bot 2004 91 1582 1598 10.3732/ajb.91.10.1582 21652310 (Pubitemid 43193719)
    • (2004) American Journal of Botany , vol.91 , Issue.10 , pp. 1582-1598
    • Pryer, K.M.1    Schuettpelz, E.2    Wolf, P.G.3    Schneider, H.4    Smith, A.R.5    Cranfill, R.6
  • 23
    • 23744445592 scopus 로고    scopus 로고
    • Incongruence between primary sequence data and the distribution of a mitochondrial atp1 group II intron among ferns and horsetails
    • DOI 10.1016/j.ympev.2005.04.008, PII S105579030500134X
    • Incongruence between primary sequence data and the distribution of a mitochondrial atp1 group II intron among ferns and horsetails. Wikstrom N, Pryer KM, Mol Phylogenet Evol 2005 36 484 493 10.1016/j.ympev.2005.04.008 15922630 (Pubitemid 41138886)
    • (2005) Molecular Phylogenetics and Evolution , vol.36 , Issue.3 , pp. 484-493
    • Wikstrom, N.1    Pryer, K.M.2
  • 24
    • 0033638953 scopus 로고    scopus 로고
    • Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants
    • 10.1093/oxfordjournals.molbev.a026290 11110905
    • Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants. Nickrent DL, Parkinson CL, Palmer JD, Duff RJ, Mol Biol Evol 2000 17 1885 1895 10.1093/oxfordjournals.molbev.a026290 11110905
    • (2000) Mol Biol Evol , vol.17 , pp. 1885-1895
    • Nickrent, D.L.1    Parkinson, C.L.2    Palmer, J.D.3    Duff, R.J.4
  • 25
    • 78049317316 scopus 로고    scopus 로고
    • Utility of a large, multigene plastid data set in inferring higher-order relationships in ferns and relatives (monilophytes)
    • 10.3732/ajb.0900305 21616899
    • Utility of a large, multigene plastid data set in inferring higher-order relationships in ferns and relatives (monilophytes). Rai HS, Graham SW, Am J Bot 2010 97 1444 1456 10.3732/ajb.0900305 21616899
    • (2010) Am J Bot , vol.97 , pp. 1444-1456
    • Rai, H.S.1    Graham, S.W.2
  • 26
    • 0242575009 scopus 로고    scopus 로고
    • Phylogenetic relationships and evolution of extant horsetails, Equisetum, based on chloroplast DNA sequence data (rbcL and trnL-F)
    • Phylogenetic relationships and evolution of extant horsetails, Equisetum, based on chloroplast DNA sequence data (rbcL and trnL-F). Des Marais DL, Smith AR, Britton DM, Pryer KM, Int J Plant Sci 2003 164 737 751 10.1086/376817 (Pubitemid 37417966)
    • (2003) International Journal of Plant Sciences , vol.164 , Issue.5 , pp. 737-751
    • Des Marais, D.L.1    Smith, A.R.2    Britton, D.M.3    Pryer, K.M.4
  • 27
    • 34548568981 scopus 로고    scopus 로고
    • Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants
    • DOI 10.1186/1471-2148-7-135
    • Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants. Mower JP, Touzet P, Gummow JS, Delph LF, Palmer JD, BMC Evol Biol 2007 7 135 10.1186/1471-2148-7-135 17688696 (Pubitemid 350092576)
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 135
    • Mower, J.P.1    Touzet, P.2    Gummow, J.S.3    Delph, L.F.4    Palmer, J.D.5
  • 28
    • 20444491634 scopus 로고    scopus 로고
    • A review of long-branch attraction
    • DOI 10.1111/j.1096-0031.2005.00059.x
    • A review of long-branch attraction. Bergsten J, Cladistics 2005 21 163 193 10.1111/j.1096-0031.2005.00059.x (Pubitemid 40817232)
    • (2005) Cladistics , vol.21 , Issue.2 , pp. 163-193
    • Bergsten, J.1
  • 29
    • 0033793019 scopus 로고    scopus 로고
    • Rare genomic changes as a tool for phylogenetics
    • 10.1016/S0169-5347(00)01967-4 11050348
    • Rare genomic changes as a tool for phylogenetics. Rokas A, Holland PW, Trends Ecol Evol 2000 15 454 459 10.1016/S0169-5347(00)01967-4 11050348
    • (2000) Trends Ecol Evol , vol.15 , pp. 454-459
    • Rokas, A.1    Holland, P.W.2
  • 30
    • 0032514486 scopus 로고    scopus 로고
    • The gain of three mitochondrial introns identifies liverworts as the earliest land plants
    • DOI 10.1038/29286
    • The gain of three mitochondrial introns identifies liverworts as the earliest land plants. Qiu YL, Cho Y, Cox JC, Palmer JD, Nature 1998 394 671 674 10.1038/29286 9716129 (Pubitemid 28389791)
    • (1998) Nature , vol.394 , Issue.6694 , pp. 671-674
    • Qiu, Y.-L.1    Cho, Y.2    Cox, J.C.3    Palmer, J.D.4
  • 31
    • 0026598577 scopus 로고
    • Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants
    • 10.1126/science.255.5052.1697 17749424
    • Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants. Raubeson LA, Jansen RK, Science 1992 255 1697 1699 10.1126/science.255.5052.1697 17749424
    • (1992) Science , vol.255 , pp. 1697-1699
    • Raubeson, L.A.1    Jansen, R.K.2
  • 32
    • 34547327967 scopus 로고    scopus 로고
    • Molecular phylogeny of horsetails (Equisetum) including chloroplast atpB sequences
    • DOI 10.1007/s10265-007-0088-x
    • Molecular phylogeny of horsetails (Equisetum) including chloroplast atpB sequences. Guillon JM, J Plant Res 2007 120 569 574 10.1007/s10265-007-0088-x 17476459 (Pubitemid 47142278)
    • (2007) Journal of Plant Research , vol.120 , Issue.4 , pp. 569-574
    • Guillon, J.-M.1
  • 33
    • 0000793271 scopus 로고
    • Insights into fern evolution from mapping chloroplast genomes
    • 10.2307/1547809
    • Insights into fern evolution from mapping chloroplast genomes. Raubeson LA, Stein DB, Am Fern J 1995 85 193 204 10.2307/1547809
    • (1995) Am Fern J , vol.85 , pp. 193-204
    • Raubeson, L.A.1    Stein, D.B.2
  • 34
    • 79955464563 scopus 로고    scopus 로고
    • First insights into fern matK phylogeny
    • 10.1016/j.ympev.2011.03.010 21402161
    • First insights into fern matK phylogeny. Kuo LY, Li FW, Chiou WL, Wang CN, Mol Phylogenet Evol 2011 59 556 566 10.1016/j.ympev.2011.03.010 21402161
    • (2011) Mol Phylogenet Evol , vol.59 , pp. 556-566
    • Kuo, L.Y.1    Li, F.W.2    Chiou, W.L.3    Wang, C.N.4
  • 35
    • 4444363004 scopus 로고    scopus 로고
    • High levels of RNA editing in a vascular plant chloroplast genome: Analysis of transcripts from the fern Adiantum capillus-veneris
    • DOI 10.1016/j.gene.2004.06.018, PII S0378111904003518
    • High levels of RNA editing in a vascular plant chloroplast genome: analysis of transcripts from the fern Adiantum capillus-veneris. Wolf PG, Rowe CA, Hasebe M, Gene 2004 339 89 97 15363849 (Pubitemid 39201131)
    • (2004) Gene , vol.339 , Issue.1-2 , pp. 89-97
    • Wolf, P.G.1    Rowe, C.A.2    Hasebe, M.3
  • 36
    • 0037572306 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the chloroplast genome from a leptosporangiate fern, Adiantum capillus-veneris L
    • DOI 10.1093/dnares/10.2.59
    • Complete nucleotide sequence of the chloroplast genome from a leptosporangiate fern, Adiantum capillus-veneris L. Wolf PG, Rowe CA, Sinclair RB, Hasebe M, DNA Res 2003 10 59 65 10.1093/dnares/10.2.59 12755170 (Pubitemid 36612723)
    • (2003) DNA Research , vol.10 , Issue.2 , pp. 59-65
    • Wolf, P.G.1    Rowe, C.A.2    Sinclair, R.B.3    Hasebe, M.4
  • 37
    • 2442517979 scopus 로고    scopus 로고
    • Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes
    • DOI 10.1007/s00239-003-2564-9
    • Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes. Chaw SM, Chang CC, Chen HL, Li WH, J Mol Evol 2004 58 424 441 10.1007/s00239-003-2564-9 15114421 (Pubitemid 38501416)
    • (2004) Journal of Molecular Evolution , vol.58 , Issue.4 , pp. 424-441
    • Chaw, S.-M.1    Chang, C.-C.2    Chen, H.-L.3    Li, W.-H.4
  • 38
    • 79953897706 scopus 로고    scopus 로고
    • Evolution of the rpoB-psbZ region in fern plastid genomes: Notable structural rearrangements and highly variable intergenic spacers
    • 10.1186/1471-2229-11-64 21486489
    • Evolution of the rpoB-psbZ region in fern plastid genomes: notable structural rearrangements and highly variable intergenic spacers. Gao L, Zhou Y, Wang ZW, Su YJ, Wang T, BMC Plant Biol 2011 11 64 10.1186/1471-2229-11-64 21486489
    • (2011) BMC Plant Biol , vol.11 , pp. 64
    • Gao, L.1    Zhou, Y.2    Wang, Z.W.3    Su, Y.J.4    Wang, T.5
  • 39
    • 3042698703 scopus 로고    scopus 로고
    • Distribution of introns in the mitochondrial gene nad1 in land plants: Phylogenetic and molecular evolutionary implications
    • DOI 10.1016/j.ympev.2003.12.013, PII S1055790304000326
    • Distribution of introns in the mitochondrial gene nad1 in land plants: phylogenetic and molecular evolutionary implications. Dombrovska O, Qiu Y-L, Mol Phylogenet Evol 2004 32 246 263 10.1016/j.ympev.2003.12.013 15186811 (Pubitemid 38851943)
    • (2004) Molecular Phylogenetics and Evolution , vol.32 , Issue.1 , pp. 246-263
    • Dombrovska, O.1    Qiu, Y.-L.2
  • 40
    • 84864249563 scopus 로고    scopus 로고
    • Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
    • 10.1186/1741-7007-10-65 22839781
    • Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria). Chiari Y, Cahais V, Galtier N, Delsuc F, BMC Biol 2012 10 65 10.1186/1741-7007-10-65 22839781
    • (2012) BMC Biol , vol.10 , pp. 65
    • Chiari, Y.1    Cahais, V.2    Galtier, N.3    Delsuc, F.4
  • 41
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3: A Bayesian software package for phylogenetic reconstruction and molecular dating
    • 10.1093/bioinformatics/btp368 19535536
    • PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Lartillot N, Lepage T, Blanquart S, Bioinformatics 2009 25 2286 2288 10.1093/bioinformatics/btp368 19535536
    • (2009) Bioinformatics , vol.25 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 42
    • 7344231629 scopus 로고
    • Organelle DNA isolation and RFLP analysis
    • Dordrecht: Kluwer Academic Osborn TC, Beckmann JS
    • Organelle DNA isolation and RFLP analysis. Palmer JD, Plant Genomes: Methods for Genetic and Physical Mapping Dordrecht: Kluwer Academic, Osborn TC, Beckmann JS, 1992 35 53
    • (1992) Plant Genomes: Methods for Genetic and Physical Mapping , pp. 35-53
    • Palmer, J.D.1
  • 43
    • 78650378822 scopus 로고    scopus 로고
    • Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes
    • 10.1186/1741-7007-8-150 21176201
    • Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes. Mower JP, Stefanović S, Hao W, Gummow JS, Jain K, Ahmed D, Palmer JD, BMC Biol 2010 8 150 10.1186/1741-7007-8-150 21176201
    • (2010) BMC Biol , vol.8 , pp. 150
    • Mower, J.P.1    Stefanović, S.2    Hao, W.3    Gummow, J.S.4    Jain, K.5    Ahmed, D.6    Palmer, J.D.7
  • 44
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Doyle JJ, Doyle JL, Phytochem Bull 1987 19 11 15
    • (1987) Phytochem Bull , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 45
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • DOI 10.1101/gr.074492.107
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Zerbino DR, Birney E, Genome Res 2008 18 821 829 10.1101/gr.074492.107 18349386 (Pubitemid 351645072)
    • (2008) Genome Research , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 46
    • 79951530130 scopus 로고    scopus 로고
    • Scaffolding pre-assembled contigs using SSPACE
    • 10.1093/bioinformatics/btq683 21149342
    • Scaffolding pre-assembled contigs using SSPACE. Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W, Bioinformatics 2011 27 578 579 10.1093/bioinformatics/btq683 21149342
    • (2011) Bioinformatics , vol.27 , pp. 578-579
    • Boetzer, M.1    Henkel, C.V.2    Jansen, H.J.3    Butler, D.4    Pirovano, W.5
  • 47
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • 10.1038/nmeth.1923 22388286
    • Fast gapped-read alignment with Bowtie 2. Langmead B, Salzberg SL, Nat Methods 2012 9 357 359 10.1038/nmeth.1923 22388286
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 48
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • DOI 10.1093/bioinformatics/bth352
    • Automatic annotation of organellar genomes with DOGMA. Wyman SK, Jansen RK, Boore JL, Bioinformatics 2004 20 3252 3255 10.1093/bioinformatics/bth352 15180927 (Pubitemid 39619219)
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 50
    • 79952406380 scopus 로고    scopus 로고
    • SequenceMatrix: Concatenation software for the fast assembly of multi-gene datasets with character set and codon information
    • 10.1111/j.1096-0031.2010.00329.x
    • SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Vaidya G, Lohman DJ, Meier R, Cladistics 2011 27 171 180 10.1111/j.1096-0031.2010.00329.x
    • (2011) Cladistics , vol.27 , pp. 171-180
    • Vaidya, G.1    Lohman, D.J.2    Meier, R.3
  • 51
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Castresana J, Mol Biol Evol 2000 17 540 552 10.1093/oxfordjournals.molbev.a026334 10742046 (Pubitemid 30210700)
    • (2000) Molecular Biology and Evolution , vol.17 , Issue.4 , pp. 540-552
    • Castresana, J.1
  • 52
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • DOI 10.1093/bioinformatics/btl446
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Stamatakis A, Bioinformatics 2006 22 2688 2690 10.1093/bioinformatics/btl446 16928733 (Pubitemid 44642609)
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 53
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML Web servers
    • 10.1080/10635150802429642 18853362
    • A rapid bootstrap algorithm for the RAxML Web servers. Stamatakis A, Hoover P, Rougemont J, Syst Biol 2008 57 758 771 10.1080/10635150802429642 18853362
    • (2008) Syst Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 54
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • MRBAYES: Bayesian inference of phylogenetic trees. Huelsenbeck JP, Ronquist F, Bioinformatics 2001 17 754 755 10.1093/bioinformatics/17.8.754 11524383 (Pubitemid 32851390)
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.