Proteomic and bioinformatic analysis of differentially expressed proteins in denervated skeletal muscle

International Journal of Molecular Medicine

Volumn 33, Issue 6, 2014, Pages 1586-1596

  Sun, Hualin ^a,b   Qiu, Jiaying ^b   Chen, Yanfei ^b   Yu, Miaomei ^b   Ding, Fei ^b   Gu, Xiaosong ^a,b  

^a SOOCHOW UNIVERSITY   (China)

^b NANTONG UNIVERSITY   (China)

Author keywords

Bioinformatics; Denervation; Enolase; Proteomics; Skeletal muscle atrophy; Tumor necrosis factor receptor associated factor 6

Indexed keywords

ALPHA ENOLASE; BETA ENOLASE; ENOLASE; F BOX PROTEIN; GLUCOCORTICOID; MUSCLE RING FINGER 1 PROTEIN; TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED FACTOR 6; UNCLASSIFIED DRUG; FBXO32 PROTEIN, HUMAN; MUSCLE PROTEIN; TRIM63 PROTEIN, HUMAN; UBIQUITIN PROTEIN LIGASE;

ANIMAL EXPERIMENT; ARTICLE; BIOINFORMATICS; CITRIC ACID CYCLE; CONTROLLED STUDY; DATA BASE; FEMALE; GENE ONTOLOGY; GLYCOLYSIS; IMMUNOHISTOCHEMISTRY; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MUSCLE ATROPHY; MUSCLE DENERVATION; MYOTUBE; NONHUMAN; OXIDATIVE PHOSPHORYLATION; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; PROTEOMICS; RAT; SKELETAL MUSCLE; TANDEM MASS SPECTROMETRY; TIBIALIS ANTERIOR MUSCLE; UPREGULATION; VALIDATION PROCESS; WESTERN BLOTTING; ANIMAL; BIOLOGY; HUMAN; MALE; METABOLISM; PROCEDURES; SPRAGUE DAWLEY RAT;

ANIMALS; COMPUTATIONAL BIOLOGY; HUMANS; MALE; MUSCLE DENERVATION; MUSCLE PROTEINS; MUSCLE, SKELETAL; PROTEOMICS; RATS; RATS, SPRAGUE-DAWLEY; SKP CULLIN F-BOX PROTEIN LIGASES; TANDEM MASS SPECTROMETRY; TNF RECEPTOR-ASSOCIATED FACTOR 6; UBIQUITIN-PROTEIN LIGASES;

EID: 84899529914     PISSN: 11073756     EISSN: 1791244X     Source Type: Journal    
DOI: 10.3892/ijmm.2014.1737     Document Type: Article

References (42)

1. Jackman RW and Kandarian SC: Am J Physiol Cell Physiol 287: C834-843, 2004.
2. Ibebunjo C, Chick JM, Kendall T, et al: Genomic and proteomic profiling reveals reduced mitochondrial function and disruption of the neuromuscular junction driving rat sarcopenia. Mol Cell Biol 33: 194-212, 2013.
3. McKinnell IW and Rudnicki MA: Molecular mechanisms of muscle atrophy. Cell 119: 907-910, 2004. (Pubitemid 40037604)
4. Romanick M, Thompson LV and Brown-Borg HM: Murine models of atrophy, cachexia, and sarcopenia in skeletal muscle. Biochim Biophys Acta 1832: 1410-1420, 2013.
5. Wei B, Dui W, Liu D, et al: MST1, a key player, in enhancing fast skeletal muscle atrophy. BMC Biology 11: 12, 2013.
6. Nagpal P, Plant PJ, Correa J, et al: The ubiquitin ligase Nedd4-1 participates in denervation-induced skeletal muscle atrophy in mice. PloS One 7: e46427, 2012.
7. Nader GA: Molecular determinants of skeletal muscle mass: getting the 'AKT' together. Int J Biochem Cell Biol 37: 1985-1996, 2005.
8. Ramamoorthy S, Donohue M and Buck M: Decreased Jun-D and myogenin expression in muscle wasting of human cachexia. Am J Physiol Endocrinol Metab 297: E392-401, 2009.
9. Menconi MJ, Arany ZP, Alamdari N, et al: Sepsis and glucocorticoids downregulate the expression of the nuclear cofactor PGC-1beta in skeletal muscle. Am J Physiol Endocrinol Metab 299: E533-543, 2010.
10. Tews DS, Behrhof W and Schindler S: Expression patterns of initiator and effector caspases in denervated human skeletal muscle. Muscle Nerve 31: 175-181, 2005. (Pubitemid 40189838)
11. Bantscheff M, Boesche M, Eberhard D, et al: Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer. Mol Cell Proteomics 7: 1702-1713, 2008.
12. Sun H, Li M, Gong L, et al: iTRAQ-coupled 2D LC-MS/MS analysis on differentially expressed proteins in denervated tibialis anterior muscle of Rattus norvegicus. Mol Cell Biochem 364: 193-207, 2012.
13. Sinclair J, Metodieva G, Dafou D, et al: Profiling signatures of ovarian cancer tumour suppression using 2D-DIGE and 2D-LC-MS/MS with tandem mass tagging. J Proteomics 74: 451-465, 2011.
14. Szklarczyk D, Franceschini A, Kuhn M, et al: The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res 39: D561-D568, 2011.
15. Sun H, Zhu T, Ding F, et al: Proteomic studies of rat tibialis anterior muscle during postnatal growth and development. Mol Cell Biochem 332: 161-171, 2009.
16. Menconi M, Gonnella P, Petkova V, et al: Dexamethasone and corticosterone induce similar, but not identical, muscle wasting responses in cultured L6 and C2C12 myotubes. J Cell Biochem 105: 353-364, 2008.
17. Sanada T, Kim M, Mimuro H, et al: The Shigella flexneri effector OspI deamidates UBC13 to dampen the inflammatory response. Nature 483: 623-626, 2012.
18. Paul PK, Bhatnagar S, Mishra V, et al: The E3 ubiquitin ligase TRAF6 intercedes in starvation-induced skeletal muscle atrophy through multiple mechanisms. Mol Cell Biol 32: 1248-1259, 2012.
19. Jones A, Hwang DJ, Narayanan R, et al: Effects of a novel selective androgen receptor modulator on dexamethasone-induced and hypogonadism-induced muscle atrophy. Endocrinology 151: 3706-3719, 2010.
20. Wang X, Pickrell AM, Rossi SG, et al: Transient systemic mtDNA damage leads to muscle wasting by reducing the satellite cells pool. Hum Mol Genet 22: 3976-3986, 2013.
21. Calvani R, Joseph AM, Adhihetty PJ, et al: Mitochondrial pathways in sarcopenia of aging and disuse muscle atrophy. Biol Chem 394: 393-414, 2013.
22. Picard M, Ritchie D, Thomas MM, et al: Alterations in intrinsic mitochondrial function with aging are fiber type-specific and do not explain differential atrophy between muscles. Aging Cell 10: 1047-1055, 2011.
23. Sun H, Liu J, Ding F, et al: Investigation of differentially expressed proteins in rat gastrocnemius muscle during denervation-reinnervation. J Muscle Res Cell Motil 27: 241-250, 2006. (Pubitemid 43999251)
24. Keller A, Peltzer J, Carpentier G, et al: Interactions of enolase isoforms with tubulin and microtubules during myogenesis. Biochim Biophys Acta 1770: 919-926, 2007. (Pubitemid 46617030)
25. Merkulova T, Dehaupas M, Nevers MC, et al: Differential modulation of alpha, beta and gamma enolase isoforms in regenerating mouse skeletal muscle. Eur J Biochem 267: 3735-3743, 2000. (Pubitemid 30423036)
26. Merkulova T, Lucas M, Jabet C, et al: Biochemical characterization of the mouse muscle-specific enolase: developmental changes in electrophoretic variants and selective binding to other proteins. Biochem J 323 (Pt 3): 791-800, 1997. (Pubitemid 27202351)
27. Comi GP, Fortunato F, Lucchiari S, et al: Beta-enolase deficiency, a new metabolic myopathy of distal glycolysis. Ann Neurol 50: 202-207, 2001. (Pubitemid 32738145)
28. Seweryn E, Pietkiewicz J, Szamborska A, et al: Enolase on the surface of prokaryotic and eukaryotic cells is a receptor for human plasminogen. Postepy Hig Med Dosw (Online) 61: 672-682, 2007 (In Polish).
29. Díaz-Ramos A, Roig-Borrellas A, García-Melero A, et al: Requirement of plasminogen binding to its cell-surface receptor alpha-enolase for efficient regeneration of normal and dystrophic skeletal muscle. PloS One 7: e50477, 2012.
30. Díaz-Ramos A, Roig-Borrellas A, García-Melero A, et al: alpha-Enolase, a multifunctional protein: its role on pathophysiological situations. J Biomed Biotechnology 2012: 156795, 2012.
31. Aaronson RM, Graven KK, Tucci M, et al: Non-neuronal enolase is an endothelial hypoxic stress protein. J Biol Chem 270: 27752-27757, 1995.
32. Fontán PA, Pancholi V, Nociari MM, et al: Antibodies to streptococcal surface enolase react with human α-enolase: implications in poststreptococcal sequelae. J Infect Dis 182: 1712-1721, 2000.
33. Paul PK, Gupta SK, Bhatnagar S, et al: Targeted ablation of TRAF6 inhibits skeletal muscle wasting in mice. J Cell Biol 191: 1395-1411, 2010.
34. Zhao W, Pan J, Zhao Z, et al: Testosterone protects against dexamethasone-induced muscle atrophy, protein degradation and MAFbx upregulation. J Steroid Biochem Mol Biol 110: 125-129, 2008.
35. Castillero E, Alamdari N, Lecker SH, et al: Suppression of atrogin-1 and MuRF1 prevents dexamethasone-induced atrophy of cultured myotubes. Metabolism 62: 1495-1502, 2013.
36. Castillero E, Alamdari N, Aversa Z, et al: PPARβ/δ regulates glucocorticoid- and sepsis-induced FOXO1 activation and muscle wasting. PloS One 8: e59726, 2013.
37. Suetta C, Frandsen U, Jensen L, et al: Aging affects the transcriptional regulation of human skeletal muscle disuse atrophy. PloS One 7: e51238, 2012.
38. Caron AZ, Haroun S, Leblanc E, et al: The proteasome inhibitor MG132 reduces immobilization-induced skeletal muscle atrophy in mice. BMC Musculoskelet Disord 12: 185, 2011.
39. Caron AZ, Drouin G, Desrosiers J, et al: A novel hindlimb immobilization procedure for studying skeletal muscle atrophy and recovery in mouse. J Appl Physiol 106: 2049-2059, 2009.
40. Paul PK and Kumar A: TRAF6 coordinates the activation of autophagy and ubiquitin-proteasome systems in atrophying skeletal muscle. Autophagy 7: 555-556, 2011.
41. Cao PR, Kim HJ and Lecker SH: Ubiquitin-protein ligases in muscle wasting. Int J Biochem Cell Biol 37: 2088-2097, 2005. (Pubitemid 41206823)
42. Zhang L, Tang H, Kou Y, et al: MG132-mediated inhibition of the ubiquitin-proteasome pathway ameliorates cancer cachexia. J Cancer Res Clin Oncol 139: 1105-1115, 2013.