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Volumn 26, Issue 3, 2014, Pages 1330-1344

A duplicated NUCLEOLIN gene with antagonistic activity is required for chromatin organization of silent 45S rDNA in Arabidopsis

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN; NUCLEOLIN; PHOSPHOPROTEIN; RIBOSOME DNA; RIBOSOME RNA; RNA BINDING PROTEIN; RNA, RIBOSOMAL, 45S;

EID: 84899132042     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.114.123893     Document Type: Article
Times cited : (56)

References (44)
  • 1
    • 83455179423 scopus 로고    scopus 로고
    • Variations in a team: Major and minor variants of Arabidopsis thaliana rDNA genes
    • Abou-Ellail, M., Cooke, R., and Sáez-Vásquez, J. (2011). Variations in a team: Major and minor variants of Arabidopsis thaliana rDNA genes. Nucleus 2: 294-299.
    • (2011) Nucleus , vol.2 , pp. 294-299
    • Abou-Ellail, M.1    Cooke, R.2    Sáez-Vásquez, J.3
  • 3
    • 84880333586 scopus 로고    scopus 로고
    • Heterochromatin dynamics during developmental transitions in Arabidopsis-A focus on ribosomal DNA loci
    • Benoit, M., Layat, E., Tourmente, S., and Probst, A.V. (2013). Heterochromatin dynamics during developmental transitions in Arabidopsis-A focus on ribosomal DNA loci. Gene 526: 39-45.
    • (2013) Gene , vol.526 , pp. 39-45
    • Benoit, M.1    Layat, E.2    Tourmente, S.3    Probst, A.V.4
  • 4
    • 84868104218 scopus 로고    scopus 로고
    • Interaction of nucleolin with ribosomal RNA genes and its role in RNA polymerase I transcription
    • Cong, R., Das, S., Ugrinova, I., Kumar, S., Mongelard, F., Wong, J., and Bouvet, P. (2012). Interaction of nucleolin with ribosomal RNA genes and its role in RNA polymerase I transcription. Nucleic Acids Res. 40: 9441-9454.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 9441-9454
    • Cong, R.1    Das, S.2    Ugrinova, I.3    Kumar, S.4    Mongelard, F.5    Wong, J.6    Bouvet, P.7
  • 5
    • 78751501891 scopus 로고    scopus 로고
    • Regulation of the floral repressor gene FLC: The complexity of transcription in a chromatin context
    • Crevillén, P., and Dean, C. (2011). Regulation of the floral repressor gene FLC: The complexity of transcription in a chromatin context. Curr. Opin. Plant Biol. 14: 38-44.
    • (2011) Curr. Opin. Plant Biol. , vol.14 , pp. 38-44
    • Crevillén, P.1    Dean, C.2
  • 6
    • 77953079177 scopus 로고    scopus 로고
    • Mechanisms of HDA6-mediated rRNA gene silencing: Suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNAdirected cytosine methylation
    • Earley, K.W., Pontvianne, F., Wierzbicki, A.T., Blevins, T., Tucker, S., Costa-Nunes, P., Pontes, O., and Pikaard, C.S. (2010). Mechanisms of HDA6-mediated rRNA gene silencing: Suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNAdirected cytosine methylation. Genes Dev. 24: 1119-1132.
    • (2010) Genes Dev. , vol.24 , pp. 1119-1132
    • Earley, K.W.1    Pontvianne, F.2    Wierzbicki, A.T.3    Blevins, T.4    Tucker, S.5    Costa-Nunes, P.6    Pontes, O.7    Pikaard, C.S.8
  • 8
    • 0037195153 scopus 로고    scopus 로고
    • Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate
    • Fransz, P., De Jong, J.H., Lysak, M., Castiglione, M.R., and Schubert, I. (2002). Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate. Proc. Natl. Acad. Sci. USA 99: 14584-14589.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 14584-14589
    • Fransz, P.1    De Jong, J.H.2    Lysak, M.3    Castiglione, M.R.4    Schubert, I.5
  • 9
    • 84875263916 scopus 로고    scopus 로고
    • Epigenetic control of RNA polymerase I transcription in mammalian cells
    • Grummt, I., and Längst, G. (2013). Epigenetic control of RNA polymerase I transcription in mammalian cells. Biochim. Biophys. Acta 1829: 393-404.
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 393-404
    • Grummt, I.1    Längst, G.2
  • 10
    • 36749085205 scopus 로고    scopus 로고
    • Two closely related RecQ helicases have antagonistic roles in homologous recombination and DNA repair in Arabidopsis thaliana
    • Hartung, F., Suer, S., and Puchta, H. (2007). Two closely related RecQ helicases have antagonistic roles in homologous recombination and DNA repair in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 104: 18836-18841.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 18836-18841
    • Hartung, F.1    Suer, S.2    Puchta, H.3
  • 11
    • 34547093155 scopus 로고    scopus 로고
    • CyMATE: A new tool for methylation analysis of plant genomic DNA after bisulphite sequencing
    • Hetzl, J., Foerster, A.M., Raidl, G., and Mittelsten Scheid, O. (2007). CyMATE: A new tool for methylation analysis of plant genomic DNA after bisulphite sequencing. Plant J. 51: 526-536.
    • (2007) Plant J. , vol.51 , pp. 526-536
    • Hetzl, J.1    Foerster, A.M.2    Raidl, G.3    Mittelsten Scheid, O.4
  • 12
    • 76249101086 scopus 로고    scopus 로고
    • Abundance of ribosomal RNA gene copies maintains genome integrity
    • Ide, S., Miyazaki, T., Maki, H., and Kobayashi, T. (2010). Abundance of ribosomal RNA gene copies maintains genome integrity. Science 327: 693-696.
    • (2010) Science , vol.327 , pp. 693-696
    • Ide, S.1    Miyazaki, T.2    Maki, H.3    Kobayashi, T.4
  • 14
    • 0024265336 scopus 로고
    • A Drosophila rRNA gene located in euchromatin is active in transcription and nucleolus formation
    • Karpen, G.H., Schaefer, J.E., and Laird, C.D. (1988). A Drosophila rRNA gene located in euchromatin is active in transcription and nucleolus formation. Genes Dev. 2: 1745-1763.
    • (1988) Genes Dev. , vol.2 , pp. 1745-1763
    • Karpen, G.H.1    Schaefer, J.E.2    Laird, C.D.3
  • 17
    • 1542285163 scopus 로고    scopus 로고
    • A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance
    • Lawrence, R.J., Earley, K., Pontes, O., Silva, M., Chen, Z.J., Neves, N., Viegas, W., and Pikaard, C.S. (2004). A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance. Mol. Cell 13: 599-609.
    • (2004) Mol. Cell , vol.13 , pp. 599-609
    • Lawrence, R.J.1    Earley, K.2    Pontes, O.3    Silva, M.4    Chen, Z.J.5    Neves, N.6    Viegas, W.7    Pikaard, C.S.8
  • 18
    • 84857224306 scopus 로고    scopus 로고
    • Regulation of Pol I-transcribed 45S rDNA and Pol III-transcribed 5S rDNA in Arabidopsis
    • Layat, E., Sáez-Vásquez, J., and Tourmente, S. (2012). Regulation of Pol I-transcribed 45S rDNA and Pol III-transcribed 5S rDNA in Arabidopsis. Plant Cell Physiol. 53: 267-276.
    • (2012) Plant Cell Physiol. , vol.53 , pp. 267-276
    • Layat, E.1    Sáez-Vásquez, J.2    Tourmente, S.3
  • 19
    • 76449092751 scopus 로고    scopus 로고
    • The transcript elongation factor FACT affects Arabidopsis vegetative and reproductive development and genetically interacts with HUB1/ 2
    • Lolas, I.B., Himanen, K., Grønlund, J.T., Lynggaard, C., Houben, A., Melzer, M., Van Lijsebettens, M., and Grasser, K.D. (2010). The transcript elongation factor FACT affects Arabidopsis vegetative and reproductive development and genetically interacts with HUB1/ 2. Plant J. 61: 686-697.
    • (2010) Plant J. , vol.61 , pp. 686-697
    • Lolas, I.B.1    Himanen, K.2    Grønlund, J.T.3    Lynggaard, C.4    Houben, A.5    Melzer, M.6    Van Lijsebettens, M.7    Grasser, K.D.8
  • 20
    • 84881026985 scopus 로고    scopus 로고
    • Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
    • Long, Q., et al. (2013). Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nat. Genet. 45: 884-890.
    • (2013) Nat. Genet. , vol.45 , pp. 884-890
    • Long, Q.1
  • 21
    • 0033289822 scopus 로고    scopus 로고
    • Expression and purification of recombinant histones and nucleosome reconstitution
    • Luger, K., Rechsteiner, T.J., and Richmond, T.J. (1999). Expression and purification of recombinant histones and nucleosome reconstitution. Methods Mol. Biol. 119: 1-16.
    • (1999) Methods Mol. Biol. , vol.119 , pp. 1-16
    • Luger, K.1    Rechsteiner, T.J.2    Richmond, T.J.3
  • 23
    • 33846681638 scopus 로고    scopus 로고
    • Nucleolin: A multiFACeTed protein
    • Mongelard, F., and Bouvet, P. (2007). Nucleolin: A multiFACeTed protein. Trends Cell Biol. 17: 80-86.
    • (2007) Trends Cell Biol. , vol.17 , pp. 80-86
    • Mongelard, F.1    Bouvet, P.2
  • 24
    • 77957802887 scopus 로고    scopus 로고
    • Dysfunction of chromatin assembly factor 1 induces shortening of telomeres and loss of 45S rDNA in Arabidopsis thaliana
    • Mozgová, I., Mokros, P., and Fajkus, J. (2010). Dysfunction of chromatin assembly factor 1 induces shortening of telomeres and loss of 45S rDNA in Arabidopsis thaliana. Plant Cell 22: 2768-2780.
    • (2010) Plant Cell , vol.22 , pp. 2768-2780
    • Mozgová, I.1    Mokros, P.2    Fajkus, J.3
  • 25
    • 36148954289 scopus 로고    scopus 로고
    • Improved Gateway binary vectors: Highperformance vectors for creation of fusion constructs in transgenic analysis of plants
    • Nakagawa, T., et al. (2007). Improved Gateway binary vectors: Highperformance vectors for creation of fusion constructs in transgenic analysis of plants. Biosci. Biotechnol. Biochem. 71: 2095-2100.
    • (2007) Biosci. Biotechnol. Biochem. , vol.71 , pp. 2095-2100
    • Nakagawa, T.1
  • 26
    • 0027477393 scopus 로고
    • Structural alterations of the nucleolus in mutants of Saccharomyces cerevisiae defective in RNA polymerase I
    • Oakes, M., Nogi, Y., Clark, M.W., and Nomura, M. (1993). Structural alterations of the nucleolus in mutants of Saccharomyces cerevisiae defective in RNA polymerase I. Mol. Cell. Biol. 13: 2441-2455.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 2441-2455
    • Oakes, M.1    Nogi, Y.2    Clark, M.W.3    Nomura, M.4
  • 27
    • 70449555139 scopus 로고    scopus 로고
    • Ribosomal DNA contributes to global chromatin regulation
    • Paredes, S., and Maggert, K.A. (2009). Ribosomal DNA contributes to global chromatin regulation. Proc. Natl. Acad. Sci. USA 106: 17829-17834.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 17829-17834
    • Paredes, S.1    Maggert, K.A.2
  • 28
    • 7744223544 scopus 로고    scopus 로고
    • Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes
    • Pecinka, A., Schubert, V., Meister, A., Kreth, G., Klatte, M., Lysak, M.A., Fuchs, J., and Schubert, I. (2004). Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes. Chromosoma 113: 258-269.
    • (2004) Chromosoma , vol.113 , pp. 258-269
    • Pecinka, A.1    Schubert, V.2    Meister, A.3    Kreth, G.4    Klatte, M.5    Lysak, M.A.6    Fuchs, J.7    Schubert, I.8
  • 29
    • 34250685291 scopus 로고    scopus 로고
    • Arabidopsis nucleolin affects plant development and patterning
    • Petricka, J.J., and Nelson, T.M. (2007). Arabidopsis nucleolin affects plant development and patterning. Plant Physiol. 144: 173-186.
    • (2007) Plant Physiol. , vol.144 , pp. 173-186
    • Petricka, J.J.1    Nelson, T.M.2
  • 30
    • 78649686878 scopus 로고    scopus 로고
    • Nucleolin is required for DNA methylation state and the expression of rRNA gene variants in Arabidopsis thaliana
    • Pontvianne, F., et al. (2010). Nucleolin is required for DNA methylation state and the expression of rRNA gene variants in Arabidopsis thaliana. PLoS Genet. 6: e1001225.
    • (2010) PLoS Genet. , vol.6
    • Pontvianne, F.1
  • 33
    • 33846807379 scopus 로고    scopus 로고
    • Characterization of AtNUC-L1 reveals a central role of nucleolin in nucleolus organization and silencing of AtNUC-L2 gene in Arabidopsis
    • Pontvianne, F., Matía, I., Douet, J., Tourmente, S., Medina, F.J., Echeverria, M., and Sáez-Vásquez, J. (2007). Characterization of AtNUC-L1 reveals a central role of nucleolin in nucleolus organization and silencing of AtNUC-L2 gene in Arabidopsis. Mol. Biol. Cell 18: 369-379.
    • (2007) Mol. Biol. Cell , vol.18 , pp. 369-379
    • Pontvianne, F.1    Matía, I.2    Douet, J.3    Tourmente, S.4    Medina, F.J.5    Echeverria, M.6    Sáez-Vásquez, J.7
  • 35
    • 33846628597 scopus 로고    scopus 로고
    • Nucleolin is required for RNA polymerase I transcription in vivo
    • Rickards, B., Flint, S.J., Cole, M.D., and LeRoy, G. (2007). Nucleolin is required for RNA polymerase I transcription in vivo. Mol. Cell. Biol. 27: 937-948.
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 937-948
    • Rickards, B.1    Flint, S.J.2    Cole, M.D.3    LeRoy, G.4
  • 36
    • 77955160803 scopus 로고    scopus 로고
    • Genome organization and function: A view from yeast and Arabidopsis
    • Sáez-Vásquez, J., and Gadal, O. (2010). Genome organization and function: A view from yeast and Arabidopsis. Mol. Plant 3: 678-690.
    • (2010) Mol. Plant , vol.3 , pp. 678-690
    • Sáez-Vásquez, J.1    Gadal, O.2
  • 37
    • 3543040614 scopus 로고    scopus 로고
    • A plant snoRNP complex containing snoRNAs, fibrillarin, and nucleolin-like proteins is competent for both rRNA gene binding and pre-rRNA processing in vitro
    • Sáez-Vasquez, J., Caparros-Ruiz, D., Barneche, F., and Echeverría, M. (2004). A plant snoRNP complex containing snoRNAs, fibrillarin, and nucleolin-like proteins is competent for both rRNA gene binding and pre-rRNA processing in vitro. Mol. Cell. Biol. 24: 7284-7297.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 7284-7297
    • Sáez-Vasquez, J.1    Caparros-Ruiz, D.2    Barneche, F.3    Echeverría, M.4
  • 38
    • 13944266797 scopus 로고    scopus 로고
    • The dual nature of homologous recombination in plants
    • Schuermann, D., Molinier, J., Fritsch, O., and Hohn, B. (2005). The dual nature of homologous recombination in plants. Trends Genet. 21: 172-181.
    • (2005) Trends Genet. , vol.21 , pp. 172-181
    • Schuermann, D.1    Molinier, J.2    Fritsch, O.3    Hohn, B.4
  • 39
    • 79960091417 scopus 로고    scopus 로고
    • Nucleolin: The most abundant multifunctional phosphoprotein of nucleolus
    • Tajrishi, M.M., Tuteja, R., and Tuteja, N. (2011). Nucleolin: The most abundant multifunctional phosphoprotein of nucleolus. Commun. Integr. Biol. 4: 267-275.
    • (2011) Commun. Integr. Biol. , vol.4 , pp. 267-275
    • Tajrishi, M.M.1    Tuteja, R.2    Tuteja, N.3
  • 40
    • 0032217290 scopus 로고    scopus 로고
    • Nucleolin: A multifunctional major nucleolar phosphoprotein
    • Tuteja, R., and Tuteja, N. (1998). Nucleolin: A multifunctional major nucleolar phosphoprotein. Crit. Rev. Biochem. Mol. Biol. 33: 407-436.
    • (1998) Crit. Rev. Biochem. Mol. Biol. , vol.33 , pp. 407-436
    • Tuteja, R.1    Tuteja, N.2
  • 41
    • 0035206851 scopus 로고    scopus 로고
    • Enhanced homologous recombination caused by the nontranscribed spacer of the rDNA in Arabidopsis
    • Urawa, H., Hidaka, M., Ishiguro, S., Okada, K., and Horiuchi, T. (2001). Enhanced homologous recombination caused by the nontranscribed spacer of the rDNA in Arabidopsis. Mol. Genet. Genomics 266: 546-555.
    • (2001) Mol. Genet. Genomics , vol.266 , pp. 546-555
    • Urawa, H.1    Hidaka, M.2    Ishiguro, S.3    Okada, K.4    Horiuchi, T.5
  • 42
    • 84860123700 scopus 로고    scopus 로고
    • The role of the transcript elongation factors FACT and HUB1 in leaf growth and the induction of flowering
    • Van Lijsebettens, M., and Grasser, K.D. (2010). The role of the transcript elongation factors FACT and HUB1 in leaf growth and the induction of flowering. Plant Signal. Behav. 5: 715-717.
    • (2010) Plant Signal. Behav. , vol.5 , pp. 715-717
    • Van Lijsebettens, M.1    Grasser, K.D.2
  • 44
    • 55449131096 scopus 로고    scopus 로고
    • Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
    • Wierzbicki, A.T., Haag, J.R., and Pikaard, C.S. (2008). Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 135: 635-648.
    • (2008) Cell , vol.135 , pp. 635-648
    • Wierzbicki, A.T.1    Haag, J.R.2    Pikaard, C.S.3


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