-
1
-
-
78649686878
-
Nucleolin is required for DNA methylation state and the expression of rRNA gene variants in Arabidopsis thaliana
-
Pontvianne F, Abou-Ellail M, Douet J, Comella P, Matia I, Chinmayi C, et al. Nucleolin is required for DNA methylation state and the expression of rRNA gene variants in Arabidopsis thaliana. PLoS Genet 2010; 6:1001225.
-
(2010)
PLoS Genet
, vol.6
, pp. 1001225
-
-
Pontvianne, F.1
Abou-Ellail, M.2
Douet, J.3
Comella, P.4
Matia, I.5
Chinmayi, C.6
-
3
-
-
84948389779
-
Polymerase I transcription
-
In: Grasser KD, Ed., Oxford, UK: Blackwell
-
Saez-Vasquez J, Echeverria M. Polymerase I transcription. In: Grasser KD, Ed. Regulation of transcription in plants, Oxford, UK: Blackwell 2006; 162-183.
-
(2006)
Regulation of Transcription In Plants
, pp. 162-183
-
-
Saez-Vasquez, J.1
Echeverria, M.2
-
4
-
-
48849105600
-
The plant nucleolus
-
In: Kader JC, Delseny, Eds, San Diego, USA: Elsevier
-
Saez Vasquez J, Medina FJ. The plant nucleolus. In: Kader JC, Delseny, Eds. Botanical Research: Incorporating Advances in Plant Pathology, San Diego, USA: Elsevier 2008; 47:1-46.
-
(2008)
Botanical Research: Incorporating Advances In Plant Pathology
, vol.47
, pp. 1-46
-
-
Saez, V.J.1
Medina, F.J.2
-
5
-
-
34547774654
-
Different epigenetic layers engage in complex crosstalk to define the epigenetic state of mammalian rRNA genes
-
Grummt I. Different epigenetic layers engage in complex crosstalk to define the epigenetic state of mammalian rRNA genes. Hum Mol Genet 2007; 16:21-27.
-
(2007)
Hum Mol Genet
, vol.16
, pp. 21-27
-
-
Grummt, I.1
-
6
-
-
13144250163
-
Chromatin turn ons and turn offs of ribosomal RNA genes
-
Lawrence RJ, Pikaard CS. Chromatin turn ons and turn offs of ribosomal RNA genes. Cell Cycle 2004; 3:880-3.
-
(2004)
Cell Cycle
, vol.3
, pp. 880-883
-
-
Lawrence, R.J.1
Pikaard, C.S.2
-
7
-
-
33846628597
-
Nucleolin is required for RNA polymerase I transcription in vivo
-
Rickards B, Flint SJ, Cole MD, LeRoy G. Nucleolin is required for RNA polymerase I transcription in vivo. Mol Cell Biol 2007; 27:937-948.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 937-948
-
-
Rickards, B.1
Flint, S.J.2
Cole, M.D.3
Leroy, G.4
-
8
-
-
77954954525
-
The NoRC complex mediates the heterochromatin formation and stability of silent rRNA genes and centromeric repeats
-
Guetg C, Lienemann P, Sirri V, Grummt I, Hernandez-Verdun D, Hottiger MO, et al. The NoRC complex mediates the heterochromatin formation and stability of silent rRNA genes and centromeric repeats. EMBO J 2010; 29:2135-146.
-
(2010)
EMBO J
, vol.29
, pp. 2135-2146
-
-
Guetg, C.1
Lienemann, P.2
Sirri, V.3
Grummt, I.4
Hernandez-Verdun, D.5
Hottiger, M.O.6
-
9
-
-
59449110517
-
UBF levels determine the number of active ribosomal RNA genes in mammals
-
Sanij E, Poortinga G, Sharkey K, Hung S, Holloway TP, Quin J, et al. UBF levels determine the number of active ribosomal RNA genes in mammals. J Cell Biol 2008; 183:1259-1274.
-
(2008)
J Cell Biol
, vol.183
, pp. 1259-1274
-
-
Sanij, E.1
Poortinga, G.2
Sharkey, K.3
Hung, S.4
Holloway, T.P.5
Quin, J.6
-
10
-
-
77956519705
-
DNA sequence encoded repression of rRNA gene transcription in chromatin
-
Felle M, Exler JH, Merkl R, Dachauer K, Brehm A, Grummt I, et al. DNA sequence encoded repression of rRNA gene transcription in chromatin. Nucleic Acids Res 2008; 38:5304-5314.
-
(2008)
Nucleic Acids Res
, vol.38
, pp. 5304-5314
-
-
Felle, M.1
Exler, J.H.2
Merkl, R.3
Dachauer, K.4
Brehm, A.5
Grummt, I.6
-
11
-
-
42449101817
-
Epigenetic regulation of TTF-I-mediated promoter-terminator interactions of rRNA genes
-
Nemeth A, Guibert S, Tiwari VK, Ohlsson R, Langst G. Epigenetic regulation of TTF-I-mediated promoter-terminator interactions of rRNA genes. EMBO J 2008; 27:1255-1265.
-
(2008)
EMBO J
, vol.27
, pp. 1255-1265
-
-
Nemeth, A.1
Guibert, S.2
Tiwari, V.K.3
Ohlsson, R.4
Langst, G.5
-
12
-
-
78049456151
-
CTCF regulates the local epigenetic state of ribosomal DNA repeats
-
van de Nobelen S, Rosa-Garrido M, Leers J, Heath H, Soochit W, Joosen L, et al. CTCF regulates the local epigenetic state of ribosomal DNA repeats. Epigenetics Chromatin 2010; 3:19.
-
(2010)
Epigenetics Chromatin
, vol.3
, pp. 19
-
-
van de Nobelen, S.1
Rosa-Garrido, M.2
Leers, J.3
Heath, H.4
Soochit, W.5
Joosen, L.6
-
13
-
-
49349108776
-
Structure and function of ribosomal RNA gene chromatin
-
Birch JL, Zomerdijk JCBM. Structure and function of ribosomal RNA gene chromatin. Biochem Soc Trans 2008; 36:619-624.
-
(2008)
Biochem Soc Trans
, vol.36
, pp. 619-624
-
-
Birch, J.L.1
Zomerdijk, J.C.B.M.2
-
14
-
-
3543040614
-
A plant snoRNP complex containing snoRNAs, fibrillarin and nucleolin-like proteins is competent for both rRNA gene binding and pre-rRNA processing in vitro
-
Saez-Vasquez J, Caparros-Ruiz D, Barneche F, Echeverria M. A plant snoRNP complex containing snoRNAs, fibrillarin and nucleolin-like proteins is competent for both rRNA gene binding and pre-rRNA processing in vitro. Mol Cell Biol 2004; 24:7284-7297.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 7284-7297
-
-
Saez-Vasquez, J.1
Caparros-Ruiz, D.2
Barneche, F.3
Echeverria, M.4
-
16
-
-
33846807379
-
Characterization of AtNUC-L1 reveals a central role of nucleolin in nucleolus organization and silencing of AtNUC-L2 gene in Arabidopsis
-
Pontvianne F, Matía I, Douet J, Tourmente S, Medina FJ, Echeverria M, et al. Characterization of AtNUC-L1 reveals a central role of nucleolin in nucleolus organization and silencing of AtNUC-L2 gene in Arabidopsis. Mol Biol Cell 2007; 18:369-379.
-
(2007)
Mol Biol Cell
, vol.18
, pp. 369-379
-
-
Pontvianne, F.1
Matía, I.2
Douet, J.3
Tourmente, S.4
Medina, F.J.5
Echeverria, M.6
-
17
-
-
0030087850
-
RFLP and physical mapping with an rDNA-specific endonuclease reveals that nucleolus organizer regions of Arabidopsis thaliana adjoin the telomeres on chromosomes 2 and 4
-
Copenhaver GP, Pikaard CS. RFLP and physical mapping with an rDNA-specific endonuclease reveals that nucleolus organizer regions of Arabidopsis thaliana adjoin the telomeres on chromosomes 2 and 4. Plant J 1996; 9:259-272.
-
(1996)
Plant J
, vol.9
, pp. 259-272
-
-
Copenhaver, G.P.1
Pikaard, C.S.2
-
18
-
-
0030087851
-
Two-dimensional RFLP analyses reveal megabase-sized clusters of rRNA gene variants in Arabidopsis thaliana, suggesting local spreading of variants as the mode for gene homogenization during concerted evolution
-
Copenhaver GP, Pikaard CS. Two-dimensional RFLP analyses reveal megabase-sized clusters of rRNA gene variants in Arabidopsis thaliana, suggesting local spreading of variants as the mode for gene homogenization during concerted evolution. Plant J 1996; 9:273-282.
-
(1996)
Plant J
, vol.9
, pp. 273-282
-
-
Copenhaver, G.P.1
Pikaard, C.S.2
-
19
-
-
40249094660
-
Characterization of a ribonuclease III-like protein required for cleavage of the pre-rRNA in the 3'ETS in Arabidopsis
-
Comella P, Pontvianne F, Lahmy S, Vignols F, Barbezier N, Debures A, et al. Characterization of a ribonuclease III-like protein required for cleavage of the pre-rRNA in the 3'ETS in Arabidopsis. Nucleic Acids Res 2008; 36:1163-1175.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1163-1175
-
-
Comella, P.1
Pontvianne, F.2
Lahmy, S.3
Vignols, F.4
Barbezier, N.5
Debures, A.6
-
20
-
-
0025295453
-
Amplification of plant U3 and U6 snRNA gene sequences using primers specific for an upstream promoter element and conserved intragenic regions
-
Marshallsay C, Kiss T, Filipowicz W. Amplification of plant U3 and U6 snRNA gene sequences using primers specific for an upstream promoter element and conserved intragenic regions. Nucleic Acids Res 1990; 18:3459-3466.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 3459-3466
-
-
Marshallsay, C.1
Kiss, T.2
Filipowicz, W.3
-
21
-
-
75749135270
-
Identification of protein factors and U3 snoRNAs from a Brassica oleracea RNP complex involved in the processing of pre-rRNA
-
Samaha H, Delorme V, Pontvianne F, Cooke R, Delalande F, Van Dorsselaer A, et al. Identification of protein factors and U3 snoRNAs from a Brassica oleracea RNP complex involved in the processing of pre-rRNA. Plant J 2010; 61:383-398.
-
(2010)
Plant J
, vol.61
, pp. 383-398
-
-
Samaha, H.1
Delorme, V.2
Pontvianne, F.3
Cooke, R.4
Delalande, F.5
van Dorsselaer, A.6
-
22
-
-
0029093602
-
Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis
-
Beltrame M, Tollervey D. Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis. EMBO J 1995; 14:4350-4356.
-
(1995)
EMBO J
, vol.14
, pp. 4350-4356
-
-
Beltrame, M.1
Tollervey, D.2
-
23
-
-
0026579730
-
Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA
-
Beltrame M, Tollervey D. Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA. EMBO J 1992; 11:1531-1542.
-
(1992)
EMBO J
, vol.11
, pp. 1531-1542
-
-
Beltrame, M.1
Tollervey, D.2
-
24
-
-
0035726287
-
Xenopus U3 snoRNA GAC-Box A' and Box A sequences play distinct functional roles in rRNA processing
-
Borovjagin AV, Gerbi SA. Xenopus U3 snoRNA GAC-Box A' and Box A sequences play distinct functional roles in rRNA processing. Mol Cell Biol 2001; 21:6210-6221.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 6210-6221
-
-
Borovjagin, A.V.1
Gerbi, S.A.2
-
25
-
-
22744434580
-
The pattern of polymorphism in Arabidopsis thaliana
-
Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, Zheng H, et al. The pattern of polymorphism in Arabidopsis thaliana. PLoS Biol 2005; 3:196.
-
(2005)
PLoS Biol
, vol.3
, pp. 196
-
-
Nordborg, M.1
Hu, T.T.2
Ishino, Y.3
Jhaveri, J.4
Toomajian, C.5
Zheng, H.6
-
26
-
-
0026054937
-
DNA intergenic region from Arabidopsis thaliana. Structural analysis, intraspecific variation and functional implications
-
Gruendler P, Unfried I, Pascher K, Schweizer D. DNA intergenic region from Arabidopsis thaliana. Structural analysis, intraspecific variation and functional implications. J Mol Biol 1991; 221:1209-1222.
-
(1991)
J Mol Biol
, vol.221
, pp. 1209-1222
-
-
Gruendler, P.1
Unfried, I.2
Pascher, K.3
Schweizer, D.4
-
27
-
-
0024967270
-
Nucleotide sequence of the 25S-18S ribosomal gene spacer from Arabidopsis thaliana
-
Gruendler P, Unfried I, Pointner R, Schweizer D. Nucleotide sequence of the 25S-18S ribosomal gene spacer from Arabidopsis thaliana. Nucleic Acids Res 1989; 17:6395-6396.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 6395-6396
-
-
Gruendler, P.1
Unfried, I.2
Pointner, R.3
Schweizer, D.4
-
28
-
-
20244365743
-
Nucleotide sequence of the 18S rRNA gene from Arabidopsis thaliana Col0
-
Unfried I, Stocker U, Gruendler P. Nucleotide sequence of the 18S rRNA gene from Arabidopsis thaliana Col0. Nucleic Acids Res 1989; 17:7513-7527.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 7513-7527
-
-
Unfried, I.1
Stocker, U.2
Gruendler, P.3
-
29
-
-
0029654258
-
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
-
Sonnhammer EL, Durbin R. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene 1995; 167:1-10.
-
(1995)
Gene
, vol.167
, pp. 1-10
-
-
Sonnhammer, E.L.1
Durbin, R.2
-
30
-
-
79953216066
-
Incomplete homogenization of 18S ribosomal DNA coding regions in Arabidopsis thaliana
-
Mentewab AB, Jacobsen MJ, Flowers RA. Incomplete homogenization of 18S ribosomal DNA coding regions in Arabidopsis thaliana. BMC Res Notes 2011; 4:93.
-
(2011)
BMC Res Notes
, vol.4
, pp. 93
-
-
Mentewab, A.B.1
Jacobsen, M.J.2
Flowers, R.A.3
-
31
-
-
77953079177
-
Mechanisms of HDA6-mediated rRNA gene silencing: Suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation
-
Earley KW, Pontvianne F, Wierzbicki AT, Blevins T, Tucker S, Costa-Nunes P, et al. Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation. Genes Dev 2010; 24:1119-1132.
-
(2010)
Genes Dev
, vol.24
, pp. 1119-1132
-
-
Earley, K.W.1
Pontvianne, F.2
Wierzbicki, A.T.3
Blevins, T.4
Tucker, S.5
Costa-Nunes, P.6
-
32
-
-
0029981425
-
Heat shock induces a loss of rRNA-encoding DNA repeats in Brassica nigra
-
Waters ER, Schaal BA. Heat shock induces a loss of rRNA-encoding DNA repeats in Brassica nigra. Proc Natl Acad Sci USA 1996; 93:1449-1452.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 1449-1452
-
-
Waters, E.R.1
Schaal, B.A.2
-
33
-
-
0035940501
-
Telomere dysfunction triggers extensive DNA fragmentation and evolution of complex chromosome abnormalities in human malignant tumors
-
Gisselsson D, Jonson T, Petersén A, Strömbeck B, Dal Cin P, Höglund M, et al. Telomere dysfunction triggers extensive DNA fragmentation and evolution of complex chromosome abnormalities in human malignant tumors. Proc Natl Acad Sci USA 2001; 98:12683-12688.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 12683-12688
-
-
Gisselsson, D.1
Jonson, T.2
Petersén, A.3
Strömbeck, B.4
Dal-Cin, P.5
Höglund, M.6
-
34
-
-
0242636898
-
Rearrangements of ribosomal DNAclusters in late generation telomerase-deficient Arabidopsis
-
Siroky J, Zluvova J, Riha K, Shippen DE, Vyskot B. Rearrangements of ribosomal DNAclusters in late generation telomerase-deficient Arabidopsis. Chromosoma 2003; 112:116-123.
-
(2003)
Chromosoma
, vol.112
, pp. 116-123
-
-
Siroky, J.1
Zluvova, J.2
Riha, K.3
Shippen, D.E.4
Vyskot, B.5
-
35
-
-
78649312312
-
Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution
-
Murat F, Xu JH, Tannier E, Abrouk M, Guilhot N, Pont C, et al. Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution. Genome Res 2010; 20:1545-1557.
-
(2010)
Genome Res
, vol.20
, pp. 1545-1557
-
-
Murat, F.1
Xu, J.H.2
Tannier, E.3
Abrouk, M.4
Guilhot, N.5
Pont, C.6
-
36
-
-
16344363228
-
Evolution of the trnF(GAA) gene in Arabidopsis relatives and the brassicaceae family: Monophyletic origin and subsequent diversification of a plastidic pseudogene
-
Koch MA, Dobes C, Matschinger M, Bleeker W, Vogel J, Kiefer M, et al. Evolution of the trnF(GAA) gene in Arabidopsis relatives and the brassicaceae family: monophyletic origin and subsequent diversification of a plastidic pseudogene. Mol Biol Evol 2005; 22:1032-1043.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1032-1043
-
-
Koch, M.A.1
Dobes, C.2
Matschinger, M.3
Bleeker, W.4
Vogel, J.5
Kiefer, M.6
-
37
-
-
77955160803
-
Genome organization and function: A view from yeast and Arabidopsis
-
Saez-Vasquez J, Gadal O. Genome organization and function: a view from yeast and Arabidopsis. Mol Plant 2010; 3:678-90.
-
(2010)
Mol Plant
, vol.3
, pp. 678-690
-
-
Saez-Vasquez, J.1
Gadal, O.2
-
38
-
-
34347356439
-
Transcription of the 5S rRNA heterochromatic genes is epigenetically controlled in Arabidopsis thaliana and Xenopus laevis
-
Douet J, Tourmente S. Transcription of the 5S rRNA heterochromatic genes is epigenetically controlled in Arabidopsis thaliana and Xenopus laevis. Heredity 2007; 99:5-13.
-
(2007)
Heredity
, vol.99
, pp. 5-13
-
-
Douet, J.1
Tourmente, S.2
-
39
-
-
33745690105
-
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center
-
Pontes O, Li CF, Nunes PC, Haag J, Ream T, Vitins A, et al. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell 2006; 126:79-92.
-
(2006)
Cell
, vol.126
, pp. 79-92
-
-
Pontes, O.1
Li, C.F.2
Nunes, P.C.3
Haag, J.4
Ream, T.5
Vitins, A.6
-
40
-
-
11144355185
-
Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats
-
Probst AV, Fagard M, Proux F, Mourrain P, Boutet S, Earley K, et al. Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats. Plant Cell 2004; 16:1021-1034
-
(2004)
Plant Cell
, vol.16
, pp. 1021-1034
-
-
Probst, A.V.1
Fagard, M.2
Proux, F.3
Mourrain, P.4
Boutet, S.5
Earley, K.6
|