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Volumn 24, Issue 16, 2004, Pages 7284-7297

A plant snoRNP complex containing snoRNAs, fibrillarin, and nucleolin-like proteins is competent for both rRNA gene binding and pre-rRNA processing in vitro

Author keywords

[No Author keywords available]

Indexed keywords

FIBRILLARIN; NUCLEOLIN; RIBOSOME RNA; SMALL NUCLEOLAR RIBONUCLEOPROTEIN; SMALL NUCLEOLAR RNA; SPACER DNA;

EID: 3543040614     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.24.16.7284-7297.2004     Document Type: Article
Times cited : (87)

References (50)
  • 1
    • 0031890522 scopus 로고    scopus 로고
    • Plant proteins containing the RNA-recognition motif
    • Alba, M. M., and M. Pages. 1998. Plant proteins containing the RNA-recognition motif. Trends Plant Sci. 3:15-20.
    • (1998) Trends Plant Sci. , vol.3 , pp. 15-20
    • Alba, M.M.1    Pages, M.2
  • 2
    • 0034672094 scopus 로고    scopus 로고
    • Molecular basis of sequence-specific recognition of pre-ribosomal RNA by nucleolin
    • Allain, F. H., P. Bouvet, T. Dieckmann, and J. Feigon. 2000. Molecular basis of sequence-specific recognition of pre-ribosomal RNA by nucleolin. EMBO J. 19:6870-6881.
    • (2000) EMBO J. , vol.19 , pp. 6870-6881
    • Allain, F.H.1    Bouvet, P.2    Dieckmann, T.3    Feigon, J.4
  • 4
    • 0034282647 scopus 로고    scopus 로고
    • Fibrillarin genes encode both a conserved nucleolar protein and a novel small nucleolar RNA involved in ribosomal RNA methylation in Arabidopsis thaliana
    • Barneche, F., F. Steinmetz, and M. Echeverria. 2000. Fibrillarin genes encode both a conserved nucleolar protein and a novel small nucleolar RNA involved in ribosomal RNA methylation in Arabidopsis thaliana. J. Biol. Chem. 275:27212-27220.
    • (2000) J. Biol. Chem. , vol.275 , pp. 27212-27220
    • Barneche, F.1    Steinmetz, F.2    Echeverria, M.3
  • 5
    • 77957219751 scopus 로고
    • Mutational analysis of an essential binding site for the U3 snoRNA in the 5′ external transcribed spacer of yeast pre-rRNA
    • Beltrame, M., Y. Henry, and D. Tollervey. 1994. Mutational analysis of an essential binding site for the U3 snoRNA in the 5′ external transcribed spacer of yeast pre-rRNA. Nucleic Acids Res. 22:5139-5147.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5139-5147
    • Beltrame, M.1    Henry, Y.2    Tollervey, D.3
  • 6
    • 0029093602 scopus 로고
    • Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis
    • Beltrame, M., and D. Tollervey. 1995. Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis. EMBO J. 14:4350-4356.
    • (1995) EMBO J. , vol.14 , pp. 4350-4356
    • Beltrame, M.1    Tollervey, D.2
  • 7
    • 0026178449 scopus 로고
    • The complete nucleotide sequence of the intergenic spacer region of an rDNA operon from Brassica oleracea and its comparison with other crucifers
    • Bennett, R. I., and A. G. Smith. 1991. The complete nucleotide sequence of the intergenic spacer region of an rDNA operon from Brassica oleracea and its comparison with other crucifers. Plant Mol. Biol. 16:1095-1098.
    • (1991) Plant Mol. Biol. , vol.16 , pp. 1095-1098
    • Bennett, R.I.1    Smith, A.G.2
  • 9
    • 0035726287 scopus 로고    scopus 로고
    • Xenopus U3 snoRNA GAC-box A′ and box A sequences play distinct functional roles in rRNA processing
    • Borovjagin, A. V., and S. A. Gerbi. 2001. Xenopus U3 snoRNA GAC-box A′ and box A sequences play distinct functional roles in rRNA processing. Mol. Cell. Biol. 21:6210-6221.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 6210-6221
    • Borovjagin, A.V.1    Gerbi, S.A.2
  • 10
    • 0141529726 scopus 로고    scopus 로고
    • A proteomic study of the arabidopsis nuclear matrix
    • Calikowski, T. T., T. Meulia, and I. Meier. 2003. A proteomic study of the arabidopsis nuclear matrix. J. Cell. Biochem. 90:361-378.
    • (2003) J. Cell. Biochem. , vol.90 , pp. 361-378
    • Calikowski, T.T.1    Meulia, T.2    Meier, I.3
  • 11
    • 0030738916 scopus 로고    scopus 로고
    • Two ribosomal DNA-binding factors interact with a cluster of motifs on the 5′ external transcribed spacer, upstream from the primary pre-rRNA processing site in a higher plant
    • Caparros-Ruiz, D., S. Lahmy, S. Piersanti, and M. Echeverria. 1997. Two ribosomal DNA-binding factors interact with a cluster of motifs on the 5′ external transcribed spacer, upstream from the primary pre-rRNA processing site in a higher plant. Eur. J. Biochem. 247:981-989.
    • (1997) Eur. J. Biochem. , vol.247 , pp. 981-989
    • Caparros-Ruiz, D.1    Lahmy, S.2    Piersanti, S.3    Echeverria, M.4
  • 12
    • 0028932483 scopus 로고
    • Structure and comparative analysis of the rDNA intergenic spacer of Brassica rapa. Implications for the function and evolution of the Cruciferae spacer
    • Da Rocha, P. S., and H. Bertrand. 1995. Structure and comparative analysis of the rDNA intergenic spacer of Brassica rapa. Implications for the function and evolution of the Cruciferae spacer. Eur. J. Biochem. 229:550-557.
    • (1995) Eur. J. Biochem. , vol.229 , pp. 550-557
    • Da Rocha, P.S.1    Bertrand, H.2
  • 13
    • 0024287154 scopus 로고
    • Structural and transcriptional characterization of the external spacer of a ribosomal RNA nuclear gene from a higher plant
    • Delcasso-Tremousaygue, D., F. Grellet, F. Panabieres, E. D. Ananiev, and M. Delseny. 1988. Structural and transcriptional characterization of the external spacer of a ribosomal RNA nuclear gene from a higher plant. Eur. J. Biochem. 172:767-776.
    • (1988) Eur. J. Biochem. , vol.172 , pp. 767-776
    • Delcasso-Tremousaygue, D.1    Grellet, F.2    Panabieres, F.3    Ananiev, E.D.4    Delseny, M.5
  • 14
    • 0032582696 scopus 로고    scopus 로고
    • A specific isoform of hnRNP D interacts with DNA in the LR1 heterodimer: Canonical RNA binding motifs in a sequence-specific duplex DNA binding protein
    • Dempsey, L. A., L. A. Hanakahi, and N. Maizels. 1998. A specific isoform of hnRNP D interacts with DNA in the LR1 heterodimer: canonical RNA binding motifs in a sequence-specific duplex DNA binding protein. J. Biol. Chem. 273:29224-29229.
    • (1998) J. Biol. Chem. , vol.273 , pp. 29224-29229
    • Dempsey, L.A.1    Hanakahi, L.A.2    Maizels, N.3
  • 15
    • 0026830122 scopus 로고
    • Identification of an Arabidopsis DNA-binding protein with homology to nucleolin
    • Didier, D. K., and H. J. Klee. 1992. Identification of an Arabidopsis DNA-binding protein with homology to nucleolin. Plant Mol. Biol. 18:977-979.
    • (1992) Plant Mol. Biol. , vol.18 , pp. 977-979
    • Didier, D.K.1    Klee, H.J.2
  • 17
    • 0030765368 scopus 로고    scopus 로고
    • Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast
    • Dunbar, D. A., S. Wormsley, T. M. Agentis, and S. J. Baserga. 1997. Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast. Mol. Cell. Biol. 17:5803-5812.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 5803-5812
    • Dunbar, D.A.1    Wormsley, S.2    Agentis, T.M.3    Baserga, S.J.4
  • 18
    • 19244363077 scopus 로고    scopus 로고
    • 5′ETS rRNA processing facilitated by four small RNAs: U14, E3, U17, and U3
    • Enright, C. A., E. S. Maxwell, G. L. Eliceiri, and B. Sollner-Webb. 1996. 5′ETS rRNA processing facilitated by four small RNAs: U14, E3, U17, and U3. RNA 2:1094-1099.
    • (1996) RNA , vol.2 , pp. 1094-1099
    • Enright, C.A.1    Maxwell, E.S.2    Eliceiri, G.L.3    Sollner-Webb, B.4
  • 20
    • 0030570466 scopus 로고    scopus 로고
    • Nucleolin is a sequence-specific RNA-binding protein: Characterization of targets on pre-ribosomal RNA
    • Ghisolfi-Nieto, L., G. Joseph, F. Puvion-Dutilleul, F. Amalric, and P. Bouvet. 1996. Nucleolin is a sequence-specific RNA-binding protein: characterization of targets on pre-ribosomal RNA. J. Mol. Biol. 260:34-53.
    • (1996) J. Mol. Biol. , vol.260 , pp. 34-53
    • Ghisolfi-Nieto, L.1    Joseph, G.2    Puvion-Dutilleul, F.3    Amalric, F.4    Bouvet, P.5
  • 21
    • 0032473356 scopus 로고    scopus 로고
    • Nucleolin functions in the first step of ribosomal RNA processing
    • Ginisty, H., F. Amalric, and P. Bouvet. 1998. Nucleolin functions in the first step of ribosomal RNA processing. EMBO J. 17:1476-1486.
    • (1998) EMBO J. , vol.17 , pp. 1476-1486
    • Ginisty, H.1    Amalric, F.2    Bouvet, P.3
  • 22
    • 0034705373 scopus 로고    scopus 로고
    • Interaction of nucleolin with an evolutionarily conserved pre-ribosomal RNA sequence is required for the assembly of the primary processing complex
    • Ginisty, H., G. Serin, L. Ghisolfi-Nieto, B. Roger, V. Libante, F. Amalric, and P. Bouvet. 2000. Interaction of nucleolin with an evolutionarily conserved pre-ribosomal RNA sequence is required for the assembly of the primary processing complex. J. Biol. Chem. 275:18845-18850.
    • (2000) J. Biol. Chem. , vol.275 , pp. 18845-18850
    • Ginisty, H.1    Serin, G.2    Ghisolfi-Nieto, L.3    Roger, B.4    Libante, V.5    Amalric, F.6    Bouvet, P.7
  • 24
    • 0025336798 scopus 로고
    • Analysis of pre-mRNA processing in transfected plant protoplasts
    • Goodall, G. J., K. Wiebauer, and W. Filipowicz. 1990. Analysis of pre-mRNA processing in transfected plant protoplasts. Methods Enzymol. 181:148-161.
    • (1990) Methods Enzymol. , vol.181 , pp. 148-161
    • Goodall, G.J.1    Wiebauer, K.2    Filipowicz, W.3
  • 25
    • 0026054937 scopus 로고
    • rDNA intergenic region from Arabidopsis thaliana. Structural analysis, intraspecific variation and functional implications
    • Gruendler, P., I. Unfried, K. Pascher, and D. Schweizer. 1991. rDNA intergenic region from Arabidopsis thaliana. Structural analysis, intraspecific variation and functional implications. J. Mol. Biol. 221:1209-1222.
    • (1991) J. Mol. Biol. , vol.221 , pp. 1209-1222
    • Gruendler, P.1    Unfried, I.2    Pascher, K.3    Schweizer, D.4
  • 27
    • 0035798374 scopus 로고    scopus 로고
    • Trypanosoma brucei 5′ETS A′-cleavage is directed by 3′-adjacent sequences, but not two U3 snoRNA-binding elements, which are all required for subsequent pre-small subunit rRNA processing events
    • Hartshorne, T., W. Toyofuku, and J. Hollenbaugh. 2001. Trypanosoma brucei 5′ETS A′-cleavage is directed by 3′-adjacent sequences, but not two U3 snoRNA-binding elements, which are all required for subsequent pre-small subunit rRNA processing events. J. Mol. Biol. 313:733-749.
    • (2001) J. Mol. Biol. , vol.313 , pp. 733-749
    • Hartshorne, T.1    Toyofuku, W.2    Hollenbaugh, J.3
  • 28
    • 0000731879 scopus 로고
    • Affinity purification of sequence-specific DNA binding proteins
    • Kadonaga, J. T., and R. Tjian. 1986. Affinity purification of sequence-specific DNA binding proteins. Proc. Natl. Acad. Sci. USA 83:5889-5893.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 5889-5893
    • Kadonaga, J.T.1    Tjian, R.2
  • 29
    • 0025276512 scopus 로고
    • The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing
    • Kass, S., K. Tyc, J. A. Steitz, and B. Sollner-Webb. 1990. The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing. Cell 60:897-908.
    • (1990) Cell , vol.60 , pp. 897-908
    • Kass, S.1    Tyc, K.2    Steitz, J.A.3    Sollner-Webb, B.4
  • 30
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 31
    • 0030786573 scopus 로고    scopus 로고
    • Analysis of nucleolar transcription and processing domains and pre-rRNA movements by in situ hybridization
    • Lazdins, I. B., M. Delannoy, and B. Sollner-Webb. 1997. Analysis of nucleolar transcription and processing domains and pre-rRNA movements by in situ hybridization. Chromosoma 105:481-495.
    • (1997) Chromosoma , vol.105 , pp. 481-495
    • Lazdins, I.B.1    Delannoy, M.2    Sollner-Webb, B.3
  • 32
    • 0030749116 scopus 로고    scopus 로고
    • Clusters of multiple different small nucleolar RNA genes in plants are expressed as and processed from polycistronic pre-snoRNAs
    • Leader, D. J., G. P. Clark, J. Watters, A. F. Beven, P. J. Shaw, and J. W. Brown. 1997. Clusters of multiple different small nucleolar RNA genes in plants are expressed as and processed from polycistronic pre-snoRNAs. EMBO J. 16:5742-5751.
    • (1997) EMBO J. , vol.16 , pp. 5742-5751
    • Leader, D.J.1    Clark, G.P.2    Watters, J.3    Beven, A.F.4    Shaw, P.J.5    Brown, J.W.6
  • 33
    • 0026776083 scopus 로고
    • NSR1 is required for pre-rRNA processing and for the proper maintenance of steady-state levels of ribosomal subunits
    • Lee, W. C., D. Zabetakis, and T. Melese. 1992. NSR1 is required for pre-rRNA processing and for the proper maintenance of steady-state levels of ribosomal subunits. Mol. Cell. Biol. 12:3865-3871.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 3865-3871
    • Lee, W.C.1    Zabetakis, D.2    Melese, T.3
  • 34
    • 0027614156 scopus 로고
    • Intraspecific length heterogeneity of the rDNA-IGR in Arabidopsis thaliana due to homologous recombination
    • Luschnig, C., A. Bachmair, and D. Schweizer. 1993. Intraspecific length heterogeneity of the rDNA-IGR in Arabidopsis thaliana due to homologous recombination. Plant Mol. Biol. 22:543-545.
    • (1993) Plant Mol. Biol. , vol.22 , pp. 543-545
    • Luschnig, C.1    Bachmair, A.2    Schweizer, D.3
  • 36
    • 0025295453 scopus 로고
    • Amplification of plant U3 and U6 snRNA gene sequences using primers specific for an upstream promoter element and conserved intragenic regions
    • Marshallsay, C., T. Kiss, and W. Filipowicz. 1990. Amplification of plant U3 and U6 snRNA gene sequences using primers specific for an upstream promoter element and conserved intragenic regions. Nucleic Acids Res. 18:3459-3466.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3459-3466
    • Marshallsay, C.1    Kiss, T.2    Filipowicz, W.3
  • 37
    • 0027259044 scopus 로고
    • The terminal balls characteristic of eukaryotic rRNA transcription units in chromarin spreads are rRNA processing complexes
    • Mougey, E. B., M. O'Reilly, Y. Osheim, O. L. Miller, Jr., A. Beyer, and B. Sollner-Webb. 1993. The terminal balls characteristic of eukaryotic rRNA transcription units in chromarin spreads are rRNA processing complexes. Genes Dev. 7:1609-1619.
    • (1993) Genes Dev. , vol.7 , pp. 1609-1619
    • Mougey, E.B.1    O'Reilly, M.2    Osheim, Y.3    Miller Jr., O.L.4    Beyer, A.5    Sollner-Webb, B.6
  • 38
    • 0027442923 scopus 로고
    • A U3 small nuclear ribonucleoprotein-requiring processing event in the 5′ external transcribed spacer of Xenopus precursor rRNA
    • Mougey, E. B., L. K. Pape, and B. Sollner-Webb. 1993. A U3 small nuclear ribonucleoprotein-requiring processing event in the 5′ external transcribed spacer of Xenopus precursor rRNA. Mol. Cell. Biol. 13:5990-5998.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 5990-5998
    • Mougey, E.B.1    Pape, L.K.2    Sollner-Webb, B.3
  • 39
    • 0021095502 scopus 로고
    • Interaction of nucleolar phosphoprotein C23 with cloned segments of rat ribosomal deoxyribonucleic acid
    • Olson, M. O., Z. M. Rivers, B. A. Thompson, W. Y. Kao, and S. T. Case. 1983. Interaction of nucleolar phosphoprotein C23 with cloned segments of rat ribosomal deoxyribonucleic acid. Biochemistry 22:3345-3351.
    • (1983) Biochemistry , vol.22 , pp. 3345-3351
    • Olson, M.O.1    Rivers, Z.M.2    Thompson, B.A.3    Kao, W.Y.4    Case, S.T.5
  • 40
    • 0035259591 scopus 로고    scopus 로고
    • snoRNA nuclear import and potential for cotranscriptional function in pre-rRNA processing
    • Peculis, B. A. 2001. snoRNA nuclear import and potential for cotranscriptional function in pre-rRNA processing. RNA 7:207-219.
    • (2001) RNA , vol.7 , pp. 207-219
    • Peculis, B.A.1
  • 41
    • 0025274559 scopus 로고
    • Transcription of tomato ribosomal DNA and the organization of the intergenic spacer
    • Perry, K. L., and P. Palukaitis. 1990. Transcription of tomato ribosomal DNA and the organization of the intergenic spacer. Mol. Gen. Genet. 221:103-112.
    • (1990) Mol. Gen. Genet. , vol.221 , pp. 103-112
    • Perry, K.L.1    Palukaitis, P.2
  • 42
    • 0025337459 scopus 로고
    • Structural analysis of the short length ribosomal DNA variant from Pisum sativum L. cv
    • Piller, K. J., S. R. Baerson, N. O. Polans, and L. S. Kaufman. 1990. Structural analysis of the short length ribosomal DNA variant from Pisum sativum L. cv. Alaska. Nucleic Acids Res. 18:3135-3145.
    • (1990) Alaska. Nucleic Acids Res. , vol.18 , pp. 3135-3145
    • Piller, K.J.1    Baerson, S.R.2    Polans, N.O.3    Kaufman, L.S.4
  • 43
    • 0037356464 scopus 로고    scopus 로고
    • Nucleolin provides a link between RNA polymerase I transcription and pre-ribosome assembly
    • First published 11 February 2003 [Online]
    • Roger, B., A. Moisand, F. Amalric, and P. Bouvet. 2003. Nucleolin provides a link between RNA polymerase I transcription and pre-ribosome assembly. Chromosoma 111:399-407. (First published 11 February 2003 [Online].)
    • (2003) Chromosoma , vol.111 , pp. 399-407
    • Roger, B.1    Moisand, A.2    Amalric, F.3    Bouvet, P.4
  • 44
    • 0037155789 scopus 로고    scopus 로고
    • Repression of RNA polymerase I transcription by nucleolin is independent of the RNA sequence that is transcribed
    • First published 31 December 2001 [Online]
    • Roger, B., A. Moisand, F. Amalric, and P. Bouvet. 2002. Repression of RNA polymerase I transcription by nucleolin is independent of the RNA sequence that is transcribed. J. Biol. Chem. 277:10209-10219. (First published 31 December 2001 [Online].)
    • (2002) J. Biol. Chem. , vol.277 , pp. 10209-10219
    • Roger, B.1    Moisand, A.2    Amalric, F.3    Bouvet, P.4
  • 45
    • 0026694947 scopus 로고
    • In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis
    • Rosenfeld, J., J. Capdevielle, J. C. Guillemot, and P. Ferrara. 1992. In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis. Anal. Biochem. 203:173-179.
    • (1992) Anal. Biochem. , vol.203 , pp. 173-179
    • Rosenfeld, J.1    Capdevielle, J.2    Guillemot, J.C.3    Ferrara, P.4
  • 46
    • 0040398384 scopus 로고    scopus 로고
    • Accumulation and nuclear targeting of BnC24, a Brassica napus ribosomal protein corresponding to a mRNA accumulating in response to cold treatment
    • Saez-Vasquez, J., P. Gallois, and M. Delseny. 2000. Accumulation and nuclear targeting of BnC24, a Brassica napus ribosomal protein corresponding to a mRNA accumulating in response to cold treatment. Plant Sci. 156:35-46.
    • (2000) Plant Sci. , vol.156 , pp. 35-46
    • Saez-Vasquez, J.1    Gallois, P.2    Delseny, M.3
  • 48
    • 0031153922 scopus 로고    scopus 로고
    • Light regulation of the abundance of mRNA encoding a nucleolin-like protein localized in the nucleoli of pea nuclei
    • Tong, C. G., S. Reichler, S. Blumenthal, J. Balk, H. L. Hsieh, and S. J. Roux. 1997. Light regulation of the abundance of mRNA encoding a nucleolin-like protein localized in the nucleoli of pea nuclei. Plant Physiol. 114:643-652.
    • (1997) Plant Physiol. , vol.114 , pp. 643-652
    • Tong, C.G.1    Reichler, S.2    Blumenthal, S.3    Balk, J.4    Hsieh, H.L.5    Roux, S.J.6
  • 49
    • 0033367325 scopus 로고    scopus 로고
    • Ribosome synthesis in Saccharomyces cerevisiae
    • Venema, J., and D. Tollervey. 1999. Ribosome synthesis in Saccharomyces cerevisiae. Annu. Rev. Genet. 33:261-311.
    • (1999) Annu. Rev. Genet. , vol.33 , pp. 261-311
    • Venema, J.1    Tollervey, D.2
  • 50
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


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